CsGy1G003340 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G003340
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr1 : 2103517 .. 2104584 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCTAGAGTGAGTCTTATTTTTTGTTCTGAAGTACATAGTCTTGACTATGGTTAAGTAAATGAAATGATTCCATCATGTATCAACTTTAATAACAAATAAACTATGCAGAAAACAGGCATTCTGTGGAAAAATTGAACTGTTTCATAAGTTATTACACTGAGAGCGACAAATACTTTTTAATCATTATACAATAAAATGATTGAACGTATAATGTAACTATTTGTACAACACAATTCGCTCCAAAACTACACAAGAATGAGGTTGAGTTAAATAACCCATCCACGAATAGGAACAAGCTCATATTGCCTTTGATTTAAGCATCAGTAAATTCAACATCATTGACCAGATTGCCAAAAGCTCGTGGGAAATCTAGAGTGGTAGAGCAACTAATAGTGTTTGTTGTCCCCGTAGGCGTGACTTATTGTGCAAAATTCAACAGTAATGCCAAAGATATTAAGATGGTCACAAGTAGAGATATAGCTGGTCTGGAACTGGCATTTGGCAAGTAAGGATAGGCCTCTGGAGGTGGCATCACACAGTTATCACCATTGAAATAAACTCTTCTTGGGAAAGCCCAACCCTTGTCGAAAGTGAAAGTGTTCTGGTCTTTTTGAAATAGAAGCTCAGACTGCACATTACCAAGAGGACCAGCTTGATTGAGCAGATCGTTGTAGAACTTAACTCCCCATAACATCGCGGTATCATCTGCAAGACAGTGCCATAGTTACCAACCATAAGGAGAAACTCAACGGCATAACGCCGATTCTTTCCAATCAAAAGAGATGGGAATAGATACATTCAGAGATAACTTACTTAGGTCACCATATGGGCTCAACGACTTATAGTTAAAGCTGAATAATTTAGTGATATTATCAAAATTGGGATGCTGCACCACCAGATTCCAGAGAGTGTAGTTCATTCGGTAATTGAAATTTGTGATTGTGATCTTCACTCTCCAGTAATCCTTGTAATTCAGCTTCACGTGCCAATGGACACGAATAGGGCACATGTGGCTGGTACACTGGACCAAGGGTGGATTGTTGCCCGATTTATCAGGAGCTGA

mRNA sequence

ATGATTCTAGAATTGCCAAAAGCTCGTGGGAAATCTAGAGTGGTAGAGCAACTAATAGTGTTTGTTGTCCCCGTAGGCGTGACTTATTGTGCAAAATTCAACAGTAATGCCAAAGATATTAAGATGGTCACAAGTAGAGATATAGCTGGTCTGGAACTGGCATTTGGCAATGATATTATCAAAATTGGGATGCTGCACCACCAGATTCCAGAGAGTGTAGTTCATTCGGTAATTGAAATTTGTGATTGTGATCTTCACTCTCCAGTAATCCTTGTAATTCAGCTTCACGTGCCAATGGACACGAATAGGGCACATGTGGCTGGTACACTGGACCAAGGGTGGATTGTTGCCCGATTTATCAGGAGCTGA

Coding sequence (CDS)

ATGATTCTAGAATTGCCAAAAGCTCGTGGGAAATCTAGAGTGGTAGAGCAACTAATAGTGTTTGTTGTCCCCGTAGGCGTGACTTATTGTGCAAAATTCAACAGTAATGCCAAAGATATTAAGATGGTCACAAGTAGAGATATAGCTGGTCTGGAACTGGCATTTGGCAATGATATTATCAAAATTGGGATGCTGCACCACCAGATTCCAGAGAGTGTAGTTCATTCGGTAATTGAAATTTGTGATTGTGATCTTCACTCTCCAGTAATCCTTGTAATTCAGCTTCACGTGCCAATGGACACGAATAGGGCACATGTGGCTGGTACACTGGACCAAGGGTGGATTGTTGCCCGATTTATCAGGAGCTGA

Protein sequence

MILELPKARGKSRVVEQLIVFVVPVGVTYCAKFNSNAKDIKMVTSRDIAGLELAFGNDIIKIGMLHHQIPESVVHSVIEICDCDLHSPVILVIQLHVPMDTNRAHVAGTLDQGWIVARFIRS
Homology
[Close]
BLAST of CsGy1G003340 vs. NCBI nr
Match: BAS84703.1 (Os03g0416250 [Oryza sativa Japonica Group])

HSP 1 Score: 61.2 bits (147), Expect = 2.8e-06
Identity = 26/55 (47.27%), Postives = 41/55 (74.55%), Query Frame = 0 

Query: 58  DIIKIGMLHHQIPESVVHSVIEICDCDLHSPVILVIQLHVPMDTNRAHVAGTLDQ 113
           D++++G+L  + P  VVH+V+E+CD DL +PV+LV++L VP+  +RAHV   L Q
Sbjct: 15  DVVEVGVLGDERPLGVVHAVVEVCDGDLGAPVVLVVELDVPVHADRAHVRRALQQ 69

[Close]
BLAST of CsGy1G003340 vs. NCBI nr
Match: BAT02551.1 (Os07g0604433, partial [Oryza sativa Japonica Group])

HSP 1 Score: 54.7 bits (130), Expect = 2.6e-04
Identity = 23/49 (46.94%), Postives = 38/49 (77.55%), Query Frame = 0 

Query: 58  DIIKIGMLHHQIPESVVHSVIEICDCDLHSPVILVIQLHVPMDTNRAHV 107
           D++++G+L ++ P  VVH V+E+ D DL +PV+ V++LHVP+  +RAHV
Sbjct: 96  DVVEVGVLGNERPPGVVHPVVEVDDGDLGAPVLPVVELHVPVHPHRAHV 144

[Close]
BLAST of CsGy1G003340 vs. TrEMBL
Match: tr|A0A0P0VZJ0|A0A0P0VZJ0_ORYSJ (Os03g0416250 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0416250 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06
Identity = 26/55 (47.27%), Postives = 41/55 (74.55%), Query Frame = 0 

Query: 58  DIIKIGMLHHQIPESVVHSVIEICDCDLHSPVILVIQLHVPMDTNRAHVAGTLDQ 113
           D++++G+L  + P  VVH+V+E+CD DL +PV+LV++L VP+  +RAHV   L Q
Sbjct: 15  DVVEVGVLGDERPLGVVHAVVEVCDGDLGAPVVLVVELDVPVHADRAHVRRALQQ 69

[Close]
BLAST of CsGy1G003340 vs. TrEMBL
Match: tr|A0A0P0X8Q8|A0A0P0X8Q8_ORYSJ (Os07g0604433 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0604433 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.7e-04
Identity = 23/49 (46.94%), Postives = 38/49 (77.55%), Query Frame = 0 

Query: 58  DIIKIGMLHHQIPESVVHSVIEICDCDLHSPVILVIQLHVPMDTNRAHV 107
           D++++G+L ++ P  VVH V+E+ D DL +PV+ V++LHVP+  +RAHV
Sbjct: 96  DVVEVGVLGNERPPGVVHPVVEVDDGDLGAPVLPVVELHVPVHPHRAHV 144

The following BLAST results are available for this feature:
BLAST of CsGy1G003340 vs. NCBI nr
Match NameE-valueIdentityDescription
BAS84703.12.8e-0647.27Os03g0416250 [Oryza sativa Japonica Group][more]
BAT02551.12.6e-0446.94Os07g0604433, partial [Oryza sativa Japonica Group][more]
BLAST of CsGy1G003340 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy1G003340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G003340 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0P0VZJ0|A0A0P0VZJ0_ORYSJ1.8e-0647.27Os03g0416250 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0416250 PE... [more]
tr|A0A0P0X8Q8|A0A0P0X8Q8_ORYSJ1.7e-0446.94Os07g0604433 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os07... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G003340.1CsGy1G003340.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G003340Watermelon (97103) v2cgybwmbB054
CsGy1G003340Watermelon (97103) v2cgybwmbB066
CsGy1G003340Wax gourdcgybwgoB078
CsGy1G003340Cucumber (Gy14) v2cgybcgybB002
CsGy1G003340Cucurbita maxima (Rimu)cgybcmaB007
CsGy1G003340Cucurbita maxima (Rimu)cgybcmaB029
CsGy1G003340Cucurbita maxima (Rimu)cgybcmaB043
CsGy1G003340Cucurbita maxima (Rimu)cgybcmaB077
CsGy1G003340Cucurbita maxima (Rimu)cgybcmaB088
CsGy1G003340Cucurbita moschata (Rifu)cgybcmoB008
CsGy1G003340Cucurbita moschata (Rifu)cgybcmoB028
CsGy1G003340Cucurbita moschata (Rifu)cgybcmoB040
CsGy1G003340Cucurbita moschata (Rifu)cgybcmoB088
CsGy1G003340Cucurbita pepo (Zucchini)cgybcpeB020
CsGy1G003340Cucurbita pepo (Zucchini)cgybcpeB041
CsGy1G003340Cucurbita pepo (Zucchini)cgybcpeB063
CsGy1G003340Cucurbita pepo (Zucchini)cgybcpeB073
CsGy1G003340Cucurbita pepo (Zucchini)cgybcpeB096
CsGy1G003340Cucurbita pepo (Zucchini)cgybcpeB111
CsGy1G003340Cucumber (Chinese Long) v2cgybcuB001
CsGy1G003340Cucumber (Chinese Long) v2cgybcuB004
CsGy1G003340Bottle gourd (USVL1VR-Ls)cgyblsiB021
CsGy1G003340Bottle gourd (USVL1VR-Ls)cgyblsiB058
CsGy1G003340Melon (DHL92) v3.5.1cgybmeB006
CsGy1G003340Melon (DHL92) v3.5.1cgybmeB042
CsGy1G003340Melon (DHL92) v3.6.1cgybmedB036
CsGy1G003340Watermelon (Charleston Gray)cgybwcgB054
CsGy1G003340Watermelon (Charleston Gray)cgybwcgB066
CsGy1G003340Watermelon (97103) v1cgybwmB065
CsGy1G003340Watermelon (97103) v1cgybwmB082
CsGy1G003340Wild cucumber (PI 183967)cgybcpiB001
CsGy1G003340Wild cucumber (PI 183967)cgybcpiB003
CsGy1G003340Silver-seed gourdcarcgybB0394
CsGy1G003340Silver-seed gourdcarcgybB0471
CsGy1G003340Silver-seed gourdcarcgybB0468
CsGy1G003340Silver-seed gourdcarcgybB0519
CsGy1G003340Silver-seed gourdcarcgybB0592
CsGy1G003340Silver-seed gourdcarcgybB0594
CsGy1G003340Cucumber (Chinese Long) v3cgybcucB002
CsGy1G003340Cucumber (Chinese Long) v3cgybcucB004