CsGy1G002330.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G002330.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	protein RKD1-like
Location	Chr1 : 1469721 .. 1471050 (+)
Sequence length	975

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCCTTCATGGAGGCCTAAGTGTGAGATCATGCCGTCCTTTGAAGATTCATATCCTTTTTCATGCAATCTTTCTCCAATCCATTTTAGGTAATACTTATTTCAACACGTTCTGTTTTTTTTTCATACCTTTTATTTAATTTTATTTCTAATTACACTTTGTTATACAACAACAACAATTAACAATAGTTCATATAGATCAAGCTACAACCATAATTATTCAGGGCTGGATTGGAACTACGCCAATTTTGGGTTACAAGAAAACATTTTTGAAGAGTCTTTTTTGGACCCTGAAGATATTGTGCCTATTAACACTTATATATCAGGTAATTCATTCATATAATGCATTAAAAAGTCTTTTTTTCATATATATAAAAATTGGATCTTTGTGTGTTTTTTGTCTGCAGAAGATGAGGTTGGGATTTGGAATGAAATGGATAATGGGGTATTTGGGGTTGTTGAGGAAGAGCCGCCATTGTTACTGCTGGAATGTGGAGAAAATGAGGAAAAGGAAGAGATGGTGGTGAGTAATAAGAAGGGGAAGAAAAGATCAATGCGTTTGAAATCAGAAAATGAATGTAGCAACAATAACAGTAATAATAATGGGAGCTGTTATTCATCATCAAAAATGTTGTCAAGAAAAGTAATACAAGAGTATTACTATATGCCTATAACTCAAGCTGCTAAAGAGCTTAATGTTGGACTTACTCTTTTGAAGAAGAGATGTAGAGAATTGGGTATAGGAAGATGGCCTCATAGGAAGTTGATGAGCATACAAACCCTAATCAAGAATATTAAGGTATGTTTTTTTCTTGGGTGTAGCATATGAAAACTCTTCTTTCAAATGTTTTTTCTTCCTCTTATCTCTTTGGTTTTGTGACTTGTGGAAACGTAGGTGTGAAAGGATATCCATATCAGTCAAATATGATACTTAGGGTTTGTAAGTGTGTGTCACATATTTGCAGGAGCTGATTGAAAAGGGAGATGATGAAGAAGGAAATGGATCAGAGAATTATAAGTTGAAGAATGTATTGGAAATATTAGAGAATGAGAAGAAATTAATGGAGGAGAGACCAGATCTGCAGTTAGAAGACAACACAAAGAGGCTTAGACAAGCTTGTTTCAAAGCCAATTACAAGAAAAGAAAGCTCTCTGGATTAATCATCAATAATAACAATAACAACAACATTGATGATATAAATTCCCAAAGTTATTTCTCATCCTCAACCACTACCATTGATGATCAAGACCATGATGATTATGATGAAGAGATGAAGTATCTCTTATCTGATTGCTCCTTTTCTTCTGCTAATTGCATGTTCATGTAA

mRNA sequence

ATGGACCCTTCATGGAGGCCTAAGTGTGAGATCATGCCGTCCTTTGAAGATTCATATCCTTTTTCATGCAATCTTTCTCCAATCCATTTTAGATCAAGCTACAACCATAATTATTCAGGGCTGGATTGGAACTACGCCAATTTTGGGTTACAAGAAAACATTTTTGAAGAGTCTTTTTTGGACCCTGAAGATATTGTGCCTATTAACACTTATATATCAGAAGATGAGGTTGGGATTTGGAATGAAATGGATAATGGGGTATTTGGGGTTGTTGAGGAAGAGCCGCCATTGTTACTGCTGGAATGTGGAGAAAATGAGGAAAAGGAAGAGATGGTGGTGAGTAATAAGAAGGGGAAGAAAAGATCAATGCGTTTGAAATCAGAAAATGAATGTAGCAACAATAACAGTAATAATAATGGGAGCTGTTATTCATCATCAAAAATGTTGTCAAGAAAAGTAATACAAGAGTATTACTATATGCCTATAACTCAAGCTGCTAAAGAGCTTAATGTTGGACTTACTCTTTTGAAGAAGAGATGTAGAGAATTGGGTATAGGAAGATGGCCTCATAGGAAGTTGATGAGCATACAAACCCTAATCAAGAATATTAAGGAGCTGATTGAAAAGGGAGATGATGAAGAAGGAAATGGATCAGAGAATTATAAGTTGAAGAATGTATTGGAAATATTAGAGAATGAGAAGAAATTAATGGAGGAGAGACCAGATCTGCAGTTAGAAGACAACACAAAGAGGCTTAGACAAGCTTGTTTCAAAGCCAATTACAAGAAAAGAAAGCTCTCTGGATTAATCATCAATAATAACAATAACAACAACATTGATGATATAAATTCCCAAAGTTATTTCTCATCCTCAACCACTACCATTGATGATCAAGACCATGATGATTATGATGAAGAGATGAAGTATCTCTTATCTGATTGCTCCTTTTCTTCTGCTAATTGCATGTTCATGTAA

Coding sequence (CDS)

ATGGACCCTTCATGGAGGCCTAAGTGTGAGATCATGCCGTCCTTTGAAGATTCATATCCTTTTTCATGCAATCTTTCTCCAATCCATTTTAGATCAAGCTACAACCATAATTATTCAGGGCTGGATTGGAACTACGCCAATTTTGGGTTACAAGAAAACATTTTTGAAGAGTCTTTTTTGGACCCTGAAGATATTGTGCCTATTAACACTTATATATCAGAAGATGAGGTTGGGATTTGGAATGAAATGGATAATGGGGTATTTGGGGTTGTTGAGGAAGAGCCGCCATTGTTACTGCTGGAATGTGGAGAAAATGAGGAAAAGGAAGAGATGGTGGTGAGTAATAAGAAGGGGAAGAAAAGATCAATGCGTTTGAAATCAGAAAATGAATGTAGCAACAATAACAGTAATAATAATGGGAGCTGTTATTCATCATCAAAAATGTTGTCAAGAAAAGTAATACAAGAGTATTACTATATGCCTATAACTCAAGCTGCTAAAGAGCTTAATGTTGGACTTACTCTTTTGAAGAAGAGATGTAGAGAATTGGGTATAGGAAGATGGCCTCATAGGAAGTTGATGAGCATACAAACCCTAATCAAGAATATTAAGGAGCTGATTGAAAAGGGAGATGATGAAGAAGGAAATGGATCAGAGAATTATAAGTTGAAGAATGTATTGGAAATATTAGAGAATGAGAAGAAATTAATGGAGGAGAGACCAGATCTGCAGTTAGAAGACAACACAAAGAGGCTTAGACAAGCTTGTTTCAAAGCCAATTACAAGAAAAGAAAGCTCTCTGGATTAATCATCAATAATAACAATAACAACAACATTGATGATATAAATTCCCAAAGTTATTTCTCATCCTCAACCACTACCATTGATGATCAAGACCATGATGATTATGATGAAGAGATGAAGTATCTCTTATCTGATTGCTCCTTTTCTTCTGCTAATTGCATGTTCATGTAA

Protein sequence

MDPSWRPKCEIMPSFEDSYPFSCNLSPIHFRSSYNHNYSGLDWNYANFGLQENIFEESFLDPEDIVPINTYISEDEVGIWNEMDNGVFGVVEEEPPLLLLECGENEEKEEMVVSNKKGKKRSMRLKSENECSNNNSNNNGSCYSSSKMLSRKVIQEYYYMPITQAAKELNVGLTLLKKRCRELGIGRWPHRKLMSIQTLIKNIKELIEKGDDEEGNGSENYKLKNVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRKLSGLIINNNNNNNIDDINSQSYFSSSTTTIDDQDHDDYDEEMKYLLSDCSFSSANCMFM

Homology

[Close]

BLAST of CsGy1G002330.1 vs. NCBI nr
Match: KGN63670.1 (hypothetical protein Csa_1G009740 [Cucumis sativus])

HSP 1 Score: 397.1 bits (1019), Expect = 5.6e-107
Identity = 324/327 (99.08%), Postives = 324/327 (99.08%), Query Frame = 0


Query: 1   MDPSWRPKCEIMPSFEDSYPFSCNLSPIHF---RSSYNHNYSGLDWNYANFGLQENIFEE 60
           MDPSWRPKCEIMPSFEDSYPFSCNLSPIHF   RSSYNHNYSGLDWNYANFGLQENIFEE
Sbjct: 1   MDPSWRPKCEIMPSFEDSYPFSCNLSPIHFSSYRSSYNHNYSGLDWNYANFGLQENIFEE 60

Query: 61  SFLDPEDIVPINTYISEDEVGIWNEMDNGVFGVXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           SFLDPEDIVPINTYISEDEVGIWNEMDNGVFGVXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  SFLDPEDIVPINTYISEDEVGIWNEMDNGVFGVXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPITQAAKELNVGLTLLK 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPITQAAKELNVGLTLLK
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPITQAAKELNVGLTLLK 180

Query: 181 KRCRELGIGRWPHRKLMSIQTLIKNIKELIEKGDDEEGNGSENYKLKNVLEILENEKKLM 240
           KRCRELGIGRWPHRKLMSIQTLIKNIKELIEKGDDEEGNGSENYKLKNVLEILENEKKLM
Sbjct: 181 KRCRELGIGRWPHRKLMSIQTLIKNIKELIEKGDDEEGNGSENYKLKNVLEILENEKKLM 240

Query: 241 EERPDLQLEDNTKRLRQACFKANYKKRKLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           EERPDLQLEDNTKRLRQACFKANYKKRKLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 EERPDLQLEDNTKRLRQACFKANYKKRKLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXEMKYLLSDCSFSSANCMFM 325
           XXXXXXXXEMKYLLSDCSFSSANCMFM
Sbjct: 301 XXXXXXXXEMKYLLSDCSFSSANCMFM 327

[Close]

BLAST of CsGy1G002330.1 vs. NCBI nr
Match: XP_008453676.1 (PREDICTED: protein RKD1-like [Cucumis melo])

HSP 1 Score: 331.6 bits (849), Expect = 2.9e-87
Identity = 289/328 (88.11%), Postives = 298/328 (90.85%), Query Frame = 0


Query: 1   MDPSWRPKCEIMPSFED-SYPFSCNLSPIHFRSSYNHNYSGLDWNYANFGLQENIFEESF 60
           MDPSWR KCEIM SFED SY FSCNLSPIHFRSSYN++YSGLDWNY NFGLQ+NIFE+ F
Sbjct: 1   MDPSWRHKCEIM-SFEDHSYHFSCNLSPIHFRSSYNNSYSGLDWNYTNFGLQDNIFEDPF 60

Query: 61  LDPEDIVPINTYISEDEVGIWNEMDNGVFGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           LDP+DIVPINTYISED VGIWN MD+GVF V     XXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  LDPKDIVPINTYISEDGVGIWNGMDDGVFEV---VEXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPITQAAKELNVGLTLLKKR 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        PIT+AAKELNVGLTLLKKR
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVISEYFYMPITRAAKELNVGLTLLKKR 180

Query: 181 CRELGIGRWPHRKLMSIQTLIKNIKELIEKGDDEEGNGSENYKLKNVLEILENEKKLMEE 240
           CRELGI RWPHRKLMSIQTLIKN+KE IEKGD+EEGNGSEN KLKNVLEILENEKKLMEE
Sbjct: 181 CRELGIRRWPHRKLMSIQTLIKNVKE-IEKGDEEEGNGSENCKLKNVLEILENEKKLMEE 240

Query: 241 RPDLQLEDNTKRLRQACFKANYKKRKLS---XXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           RPDLQLEDNTKRLRQACFKANYKKRKLS   XXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 RPDLQLEDNTKRLRQACFKANYKKRKLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXEMKYLLSDCSFSSANCMFM 325
           XXXXXXXXX MKYLLSDCSFSS NCMFM
Sbjct: 301 XXXXXXXXXXMKYLLSDCSFSSTNCMFM 323

[Close]

BLAST of CsGy1G002330.1 vs. NCBI nr
Match: XP_011660335.1 (PREDICTED: protein RKD1-like [Cucumis sativus])

HSP 1 Score: 316.6 bits (810), Expect = 9.7e-83
Identity = 292/324 (90.12%), Postives = 292/324 (90.12%), Query Frame = 0


Query: 1   MDPSWRPKCEIMPSFEDSYPFSCNLSPIHFRSSYNHNYSGLDWNYANFGLQENIFEESFL 60
           MDPSWRPK                                LDWNYANFGLQENIFEESFL
Sbjct: 1   MDPSWRPK-------------------------------WLDWNYANFGLQENIFEESFL 60

Query: 61  DPEDIVPINTYISEDEVGIWNEMDNGVFGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           DPEDIVPINTYISEDEVGIWNEMDNGVFGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  DPEDIVPINTYISEDEVGIWNEMDNGVFGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPITQAAKELNVGLTLLKKRC 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPITQAAKELNVGLTLLKKRC
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPITQAAKELNVGLTLLKKRC 180

Query: 181 RELGIGRWPHRKLMSIQTLIKNIKELIEKGDDEEGNGSENYKLKNVLEILENEKKLMEER 240
           RELGIGRWPHRKLMSIQTLIKNIKELIEKGDDEEGNGSENYKLKNVLEILENEKKLMEER
Sbjct: 181 RELGIGRWPHRKLMSIQTLIKNIKELIEKGDDEEGNGSENYKLKNVLEILENEKKLMEER 240

Query: 241 PDLQLEDNTKRLRQACFKANYKKRKLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           PDLQLEDNTKRLRQACFKANYKKRKLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 PDLQLEDNTKRLRQACFKANYKKRKLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 293

Query: 301 XXXXXEMKYLLSDCSFSSANCMFM 325
           XXXXXEMKYLLSDCSFSSANCMFM
Sbjct: 301 XXXXXEMKYLLSDCSFSSANCMFM 293

[Close]

BLAST of CsGy1G002330.1 vs. NCBI nr
Match: XP_023516752.1 (protein RKD1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 226.9 bits (577), Expect = 1.0e-55
Identity = 157/279 (56.27%), Postives = 182/279 (65.23%), Query Frame = 0


Query: 1   MDPSWRPKCEIMPSFEDSYPFSCNLSPIHFRSSYNHNYSGLDWNYANFGLQENIFE---- 60
           M  +WRPKCE M +FED +P SC+LSP+H R+    NYS LDWN  NFG  ++ F+    
Sbjct: 1   MGATWRPKCEAM-AFEDPFPLSCHLSPLHCRTD---NYSALDWN-CNFGFPDSFFDVVPL 60

Query: 61  -------ESFLDPEDIVPINTYISED-EVGIWNEMDNGVFGVXXXXXXXXXXXXXXXXXX 120
                  +SF DP+DI PI+++ISED  VGIW+E+++  FGV                  
Sbjct: 61  LESCTNNDSFFDPKDIDPISSFISEDGGVGIWSELESEAFGV---------------EEG 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPITQAAKE 180
             XXXXXXXXX                   XXXXXXXXX             PITQAAK+
Sbjct: 121 GGXXXXXXXXXEGTMMRKAKRKCCRETSNGXXXXXXXXXTLSREAISEYFYMPITQAAKQ 180

Query: 181 LNVGLTLLKKRCRELGIGRWPHRKLMSIQTLIKNIKELIEKGDDEEGNGSENYKLKNVLE 240
           LNVGLTLLKKRCRELGI RWPHRKLMS+QTLIKN+KEL +K D ++G      KL NVL+
Sbjct: 181 LNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVKEL-QKEDGDQGVN----KLSNVLK 240

Query: 241 ILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRKLS 268
           ILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRKLS
Sbjct: 241 ILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRKLS 254

[Close]

BLAST of CsGy1G002330.1 vs. NCBI nr
Match: XP_022921381.1 (protein RKD2-like [Cucurbita moschata])

HSP 1 Score: 224.6 bits (571), Expect = 5.0e-55
Identity = 147/279 (52.69%), Postives = 171/279 (61.29%), Query Frame = 0


Query: 1   MDPSWRPKCEIMPSFEDSYPFSCNLSPIHFRSSYNHNYSGLDWNYANFGLQENIFE---- 60
           M  +WRPKCE M +FED +P SC+LSP+H R+    NYS LDWN  NFG  ++ F+    
Sbjct: 1   MGATWRPKCEAM-AFEDPFPLSCHLSPLHCRTD---NYSALDWN-CNFGFPDSFFDVVPL 60

Query: 61  -------ESFLDPEDIVPINTYISED-EVGIWNEMDNGVFGVXXXXXXXXXXXXXXXXXX 120
                  +SF DP+DI P +++ISED  VGIW+E+++  FGV                  
Sbjct: 61  LESCANNDSFFDPKDIDPFSSFISEDGGVGIWSELESEAFGV-----------------E 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPITQAAKE 180
               XXXXXXXXX                                       PITQAAK 
Sbjct: 121 EGGGXXXXXXXXXEGTMMRKAKRKCCRETSNGSGSASTKALSREVISEYFYMPITQAAKH 180

Query: 181 LNVGLTLLKKRCRELGIGRWPHRKLMSIQTLIKNIKELIEKGDDEEGNGSENYKLKNVLE 240
           LNVGLTLLKKRCRELGI RWPHRKLMS+QTLIKN+KEL +K D ++G      KL NVL+
Sbjct: 181 LNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVKEL-QKEDGDQGVN----KLSNVLK 240

Query: 241 ILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRKLS 268
           ILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRKLS
Sbjct: 241 ILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRKLS 252

[Close]

BLAST of CsGy1G002330.1 vs. TAIR10
Match: AT5G66990.1 (RWP-RK domain-containing protein)

HSP 1 Score: 130.2 bits (326), Expect = 2.3e-30
Identity = 67/106 (63.21%), Postives = 85/106 (80.19%), Query Frame = 0


Query: 161 PITQAAKELNVGLTLLKKRCRELGIGRWPHRKLMSIQTLIKNIKELIEKGDDEEGNGSEN 220
           PIT+AAKELN+G+TLLKKRCRELGI RWPHRKL S+  LI N+K+L+    + +G   ++
Sbjct: 171 PITKAAKELNIGVTLLKKRCRELGIPRWPHRKLTSLNALIANLKDLL---GNTKGRTPKS 230

Query: 221 YKLKNVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRKL 267
            KL+N LE+LE EKK++EE PDL+  D TKRLRQACFKA YK+R+L
Sbjct: 231 -KLRNALELLEMEKKMIEEVPDLEFGDKTKRLRQACFKAKYKRRRL 272

[Close]

BLAST of CsGy1G002330.1 vs. TAIR10
Match: AT1G74480.1 (RWP-RK domain-containing protein)

HSP 1 Score: 129.8 bits (325), Expect = 3.0e-30
Identity = 68/106 (64.15%), Postives = 84/106 (79.25%), Query Frame = 0


Query: 161 PITQAAKELNVGLTLLKKRCRELGIGRWPHRKLMSIQTLIKNIKELIEKGDDEEGNGSEN 220
           PITQAA  LNVGLTLLK+RCRELGI RWPHRKLMS+ TLI N+KEL      ++  G EN
Sbjct: 147 PITQAAIALNVGLTLLKRRCRELGIRRWPHRKLMSLNTLISNVKEL------QKMEGEEN 206

Query: 221 -YKLKNVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRK 266
             KL++ LE+LE EK+ +E+ PDL+ +D TKRLRQACFKAN+K++K
Sbjct: 207 AEKLQDALEMLEKEKRTIEDLPDLEFKDKTKRLRQACFKANHKRKK 246

[Close]

BLAST of CsGy1G002330.1 vs. TAIR10
Match: AT1G18790.1 (RWP-RK domain-containing protein)

HSP 1 Score: 119.8 bits (299), Expect = 3.1e-27
Identity = 65/107 (60.75%), Postives = 76/107 (71.03%), Query Frame = 0


Query: 161 PITQAAKELNVGLTLLKKRCRELGIGRWPHRKLMSIQTLIKNIKELIEKGDDEEGNGSEN 220
           PITQAA+ELN+GLTLLKKRCRELGI RWPHRKLMS+Q LI N+KEL EK + EE      
Sbjct: 140 PITQAARELNIGLTLLKKRCRELGIKRWPHRKLMSLQKLISNVKEL-EKMEGEENED--- 199

Query: 221 YKLKNVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRKLS 268
            KL+N               PDL+ ED TKRLRQACFKAN+K+++ S
Sbjct: 200 -KLRNXXXXXXXXXXXXXXXPDLKFEDKTKRLRQACFKANHKRKRRS 241

[Close]

BLAST of CsGy1G002330.1 vs. TAIR10
Match: AT5G53040.1 (RWP-RK domain-containing protein)

HSP 1 Score: 114.0 bits (284), Expect = 1.7e-25
Identity = 63/105 (60.00%), Postives = 77/105 (73.33%), Query Frame = 0


Query: 161 PITQAAKELNVGLTLLKKRCRELGIGRWPHRKLMSIQTLIKNIKELIEKGDDEEGNGSEN 220
           PI +AAKELNVGLT+LKKRCRELGI RWPHRKL S+ +LIKN+K +   G +EE      
Sbjct: 160 PIMKAAKELNVGLTVLKKRCRELGIYRWPHRKLKSLNSLIKNLKNV---GMEEE------ 219

Query: 221 YKLKNVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRK 266
             +KN    LE  + L+E+ PD +L D TK+LRQACFKANYK+RK
Sbjct: 220 --VKN----LEEHRFLIEQEPDAELSDGTKKLRQACFKANYKRRK 249

[Close]

BLAST of CsGy1G002330.1 vs. TAIR10
Match: AT4G35590.1 (RWP-RK domain-containing protein)

HSP 1 Score: 75.9 bits (185), Expect = 5.2e-14
Identity = 41/101 (40.59%), Postives = 63/101 (62.38%), Query Frame = 0


Query: 162 ITQAAKELNVGLTLLKKRCRELGIGRWPHRKLMSIQTLIKNIKELIEKGDDEEGNGSENY 221
           I +A++ L VGLT+LKK+CRE GI RWPHRK+ S+  LI +++   EK   +E N +   
Sbjct: 255 IVEASRNLKVGLTVLKKKCREFGIPRWPHRKIKSLDCLIHDLQREAEK--QQEKNEAAAM 314

Query: 222 KLKNVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYK 263
            +    E LE EK+ + +RP +++   TK+ RQ  FK  ++
Sbjct: 315 AVAKKQEKLETEKRNIVKRPFMEIGIETKKFRQENFKKRHR 353

[Close]

BLAST of CsGy1G002330.1 vs. Swiss-Prot
Match: sp|Q9FGD1|RKD3_ARATH (Protein RKD3 OS=Arabidopsis thaliana OX=3702 GN=RKD3 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 4.2e-29
Identity = 67/106 (63.21%), Postives = 85/106 (80.19%), Query Frame = 0


Query: 161 PITQAAKELNVGLTLLKKRCRELGIGRWPHRKLMSIQTLIKNIKELIEKGDDEEGNGSEN 220
           PIT+AAKELN+G+TLLKKRCRELGI RWPHRKL S+  LI N+K+L+    + +G   ++
Sbjct: 171 PITKAAKELNIGVTLLKKRCRELGIPRWPHRKLTSLNALIANLKDLL---GNTKGRTPKS 230

Query: 221 YKLKNVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRKL 267
            KL+N LE+LE EKK++EE PDL+  D TKRLRQACFKA YK+R+L
Sbjct: 231 -KLRNALELLEMEKKMIEEVPDLEFGDKTKRLRQACFKAKYKRRRL 272

[Close]

BLAST of CsGy1G002330.1 vs. Swiss-Prot
Match: sp|Q9CA66|RKD2_ARATH (Protein RKD2 OS=Arabidopsis thaliana OX=3702 GN=RKD2 PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.5e-29
Identity = 68/106 (64.15%), Postives = 84/106 (79.25%), Query Frame = 0


Query: 161 PITQAAKELNVGLTLLKKRCRELGIGRWPHRKLMSIQTLIKNIKELIEKGDDEEGNGSEN 220
           PITQAA  LNVGLTLLK+RCRELGI RWPHRKLMS+ TLI N+KEL      ++  G EN
Sbjct: 147 PITQAAIALNVGLTLLKRRCRELGIRRWPHRKLMSLNTLISNVKEL------QKMEGEEN 206

Query: 221 -YKLKNVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRK 266
             KL++ LE+LE EK+ +E+ PDL+ +D TKRLRQACFKAN+K++K
Sbjct: 207 AEKLQDALEMLEKEKRTIEDLPDLEFKDKTKRLRQACFKANHKRKK 246

[Close]

BLAST of CsGy1G002330.1 vs. Swiss-Prot
Match: sp|Q9M9U9|RKD1_ARATH (Protein RKD1 OS=Arabidopsis thaliana OX=3702 GN=RKD1 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.7e-26
Identity = 65/107 (60.75%), Postives = 76/107 (71.03%), Query Frame = 0


Query: 161 PITQAAKELNVGLTLLKKRCRELGIGRWPHRKLMSIQTLIKNIKELIEKGDDEEGNGSEN 220
           PITQAA+ELN+GLTLLKKRCRELGI RWPHRKLMS+Q LI N+KEL EK + EE      
Sbjct: 140 PITQAARELNIGLTLLKKRCRELGIKRWPHRKLMSLQKLISNVKEL-EKMEGEENED--- 199

Query: 221 YKLKNVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRKLS 268
            KL+N               PDL+ ED TKRLRQACFKAN+K+++ S
Sbjct: 200 -KLRNXXXXXXXXXXXXXXXPDLKFEDKTKRLRQACFKANHKRKRRS 241

[Close]

BLAST of CsGy1G002330.1 vs. Swiss-Prot
Match: sp|Q9LVU8|RKD4_ARATH (Protein RKD4 OS=Arabidopsis thaliana OX=3702 GN=RKD4 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.1e-24
Identity = 63/105 (60.00%), Postives = 77/105 (73.33%), Query Frame = 0


Query: 161 PITQAAKELNVGLTLLKKRCRELGIGRWPHRKLMSIQTLIKNIKELIEKGDDEEGNGSEN 220
           PI +AAKELNVGLT+LKKRCRELGI RWPHRKL S+ +LIKN+K +   G +EE      
Sbjct: 160 PIMKAAKELNVGLTVLKKRCRELGIYRWPHRKLKSLNSLIKNLKNV---GMEEE------ 219

Query: 221 YKLKNVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRK 266
             +KN    LE  + L+E+ PD +L D TK+LRQACFKANYK+RK
Sbjct: 220 --VKN----LEEHRFLIEQEPDAELSDGTKKLRQACFKANYKRRK 249

[Close]

BLAST of CsGy1G002330.1 vs. Swiss-Prot
Match: sp|O81791|RKD5_ARATH (Protein RKD5 OS=Arabidopsis thaliana OX=3702 GN=RKD5 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 9.4e-13
Identity = 41/101 (40.59%), Postives = 63/101 (62.38%), Query Frame = 0


Query: 162 ITQAAKELNVGLTLLKKRCRELGIGRWPHRKLMSIQTLIKNIKELIEKGDDEEGNGSENY 221
           I +A++ L VGLT+LKK+CRE GI RWPHRK+ S+  LI +++   EK   +E N +   
Sbjct: 255 IVEASRNLKVGLTVLKKKCREFGIPRWPHRKIKSLDCLIHDLQREAEK--QQEKNEAAAM 314

Query: 222 KLKNVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYK 263
            +    E LE EK+ + +RP +++   TK+ RQ  FK  ++
Sbjct: 315 AVAKKQEKLETEKRNIVKRPFMEIGIETKKFRQENFKKRHR 353

[Close]

BLAST of CsGy1G002330.1 vs. TrEMBL
Match: tr|A0A0A0LP42|A0A0A0LP42_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009740 PE=4 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 3.7e-107
Identity = 324/327 (99.08%), Postives = 324/327 (99.08%), Query Frame = 0


Query: 1   MDPSWRPKCEIMPSFEDSYPFSCNLSPIHF---RSSYNHNYSGLDWNYANFGLQENIFEE 60
           MDPSWRPKCEIMPSFEDSYPFSCNLSPIHF   RSSYNHNYSGLDWNYANFGLQENIFEE
Sbjct: 1   MDPSWRPKCEIMPSFEDSYPFSCNLSPIHFSSYRSSYNHNYSGLDWNYANFGLQENIFEE 60

Query: 61  SFLDPEDIVPINTYISEDEVGIWNEMDNGVFGVXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           SFLDPEDIVPINTYISEDEVGIWNEMDNGVFGVXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  SFLDPEDIVPINTYISEDEVGIWNEMDNGVFGVXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPITQAAKELNVGLTLLK 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPITQAAKELNVGLTLLK
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPITQAAKELNVGLTLLK 180

Query: 181 KRCRELGIGRWPHRKLMSIQTLIKNIKELIEKGDDEEGNGSENYKLKNVLEILENEKKLM 240
           KRCRELGIGRWPHRKLMSIQTLIKNIKELIEKGDDEEGNGSENYKLKNVLEILENEKKLM
Sbjct: 181 KRCRELGIGRWPHRKLMSIQTLIKNIKELIEKGDDEEGNGSENYKLKNVLEILENEKKLM 240

Query: 241 EERPDLQLEDNTKRLRQACFKANYKKRKLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           EERPDLQLEDNTKRLRQACFKANYKKRKLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 EERPDLQLEDNTKRLRQACFKANYKKRKLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXEMKYLLSDCSFSSANCMFM 325
           XXXXXXXXEMKYLLSDCSFSSANCMFM
Sbjct: 301 XXXXXXXXEMKYLLSDCSFSSANCMFM 327

[Close]

BLAST of CsGy1G002330.1 vs. TrEMBL
Match: tr|A0A1S3BWU6|A0A1S3BWU6_CUCME (protein RKD1-like OS=Cucumis melo OX=3656 GN=LOC103494325 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 1.9e-87
Identity = 289/328 (88.11%), Postives = 298/328 (90.85%), Query Frame = 0


Query: 1   MDPSWRPKCEIMPSFED-SYPFSCNLSPIHFRSSYNHNYSGLDWNYANFGLQENIFEESF 60
           MDPSWR KCEIM SFED SY FSCNLSPIHFRSSYN++YSGLDWNY NFGLQ+NIFE+ F
Sbjct: 1   MDPSWRHKCEIM-SFEDHSYHFSCNLSPIHFRSSYNNSYSGLDWNYTNFGLQDNIFEDPF 60

Query: 61  LDPEDIVPINTYISEDEVGIWNEMDNGVFGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           LDP+DIVPINTYISED VGIWN MD+GVF V     XXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  LDPKDIVPINTYISEDGVGIWNGMDDGVFEV---VEXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPITQAAKELNVGLTLLKKR 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        PIT+AAKELNVGLTLLKKR
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVISEYFYMPITRAAKELNVGLTLLKKR 180

Query: 181 CRELGIGRWPHRKLMSIQTLIKNIKELIEKGDDEEGNGSENYKLKNVLEILENEKKLMEE 240
           CRELGI RWPHRKLMSIQTLIKN+KE IEKGD+EEGNGSEN KLKNVLEILENEKKLMEE
Sbjct: 181 CRELGIRRWPHRKLMSIQTLIKNVKE-IEKGDEEEGNGSENCKLKNVLEILENEKKLMEE 240

Query: 241 RPDLQLEDNTKRLRQACFKANYKKRKLS---XXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           RPDLQLEDNTKRLRQACFKANYKKRKLS   XXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 RPDLQLEDNTKRLRQACFKANYKKRKLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXEMKYLLSDCSFSSANCMFM 325
           XXXXXXXXX MKYLLSDCSFSS NCMFM
Sbjct: 301 XXXXXXXXXXMKYLLSDCSFSSTNCMFM 323

[Close]

BLAST of CsGy1G002330.1 vs. TrEMBL
Match: tr|A0A2R6QH61|A0A2R6QH61_ACTCH (Uncharacterized protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc18271 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 2.6e-36
Identity = 85/106 (80.19%), Postives = 94/106 (88.68%), Query Frame = 0


Query: 161 PITQAAKELNVGLTLLKKRCRELGIGRWPHRKLMSIQTLIKNIKELIEKGDDEEGNGSEN 220
           PITQAAKELNVGLTLLKKRCRELGI RWPHRKLMS+QTLIKN++E+    D+EEG+G+E 
Sbjct: 173 PITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVQEM----DNEEGDGAEG 232

Query: 221 YKLKNVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRKL 267
            KLK  LEILE E+KLMEE PDL+LED TKRLRQACFKANYKKRKL
Sbjct: 233 -KLKEALEILEQERKLMEEVPDLELEDKTKRLRQACFKANYKKRKL 273

[Close]

BLAST of CsGy1G002330.1 vs. TrEMBL
Match: tr|A0A2N9H073|A0A2N9H073_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS32866 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 5.9e-36
Identity = 82/107 (76.64%), Postives = 95/107 (88.79%), Query Frame = 0


Query: 161 PITQAAKELNVGLTLLKKRCRELGIGRWPHRKLMSIQTLIKNIKELI-EKGDDEEGNGSE 220
           PITQAAKELNVGLTLLKKRCRELGI RWPHRKLMS+QTLIKN++E+  E+G+D EG    
Sbjct: 158 PITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVQEIAKEEGEDSEG---- 217

Query: 221 NYKLKNVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRKL 267
             KL+N ++ILE+E+KL+EE PD+QLEDNTKRLRQACFKANYKKRKL
Sbjct: 218 --KLRNAIQILESERKLLEEVPDMQLEDNTKRLRQACFKANYKKRKL 258

[Close]

BLAST of CsGy1G002330.1 vs. TrEMBL
Match: tr|A0A2P5F733|A0A2P5F733_9ROSA (RWP-RK domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_105690 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 8.5e-35
Identity = 80/106 (75.47%), Postives = 92/106 (86.79%), Query Frame = 0


Query: 161 PITQAAKELNVGLTLLKKRCRELGIGRWPHRKLMSIQTLIKNIKELIEKGDDEEGNGSEN 220
           PITQAAKELNVGLTLLKKRCRELGI RWPHRKLMS+QTLIKN+++L ++  D + N S  
Sbjct: 172 PITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVQDLGKEEGDHQENDS-- 231

Query: 221 YKLKNVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRKL 267
            KLKN +E+LE EKKL+EE PD+QL+D TKRLRQACFKANYKKRKL
Sbjct: 232 -KLKNAIELLEREKKLVEEVPDIQLDDTTKRLRQACFKANYKKRKL 274

The following BLAST results are available for this feature:

BLAST of CsGy1G002330.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63670.1	5.6e-107	99.08	hypothetical protein Csa_1G009740 [Cucumis sativus]	[more]
XP_008453676.1	2.9e-87	88.11	PREDICTED: protein RKD1-like [Cucumis melo]	[more]
XP_011660335.1	9.7e-83	90.12	PREDICTED: protein RKD1-like [Cucumis sativus]	[more]
XP_023516752.1	1.0e-55	56.27	protein RKD1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022921381.1	5.0e-55	52.69	protein RKD2-like [Cucurbita moschata]	[more]

BLAST of CsGy1G002330.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G66990.1	2.3e-30	63.21	RWP-RK domain-containing protein	[more]
AT1G74480.1	3.0e-30	64.15	RWP-RK domain-containing protein	[more]
AT1G18790.1	3.1e-27	60.75	RWP-RK domain-containing protein	[more]
AT5G53040.1	1.7e-25	60.00	RWP-RK domain-containing protein	[more]
AT4G35590.1	5.2e-14	40.59	RWP-RK domain-containing protein	[more]

BLAST of CsGy1G002330.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FGD1\|RKD3_ARATH	4.2e-29	63.21	Protein RKD3 OS=Arabidopsis thaliana OX=3702 GN=RKD3 PE=3 SV=1	[more]
sp\|Q9CA66\|RKD2_ARATH	5.5e-29	64.15	Protein RKD2 OS=Arabidopsis thaliana OX=3702 GN=RKD2 PE=2 SV=1	[more]
sp\|Q9M9U9\|RKD1_ARATH	5.7e-26	60.75	Protein RKD1 OS=Arabidopsis thaliana OX=3702 GN=RKD1 PE=3 SV=1	[more]
sp\|Q9LVU8\|RKD4_ARATH	3.1e-24	60.00	Protein RKD4 OS=Arabidopsis thaliana OX=3702 GN=RKD4 PE=3 SV=1	[more]
sp\|O81791\|RKD5_ARATH	9.4e-13	40.59	Protein RKD5 OS=Arabidopsis thaliana OX=3702 GN=RKD5 PE=3 SV=1	[more]

BLAST of CsGy1G002330.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LP42\|A0A0A0LP42_CUCSA	3.7e-107	99.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009740 PE=4 SV=1	[more]
tr\|A0A1S3BWU6\|A0A1S3BWU6_CUCME	1.9e-87	88.11	protein RKD1-like OS=Cucumis melo OX=3656 GN=LOC103494325 PE=4 SV=1	[more]
tr\|A0A2R6QH61\|A0A2R6QH61_ACTCH	2.6e-36	80.19	Uncharacterized protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY0...	[more]
tr\|A0A2N9H073\|A0A2N9H073_FAGSY	5.9e-36	76.64	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS32866 PE=4 SV=1	[more]
tr\|A0A2P5F733\|A0A2P5F733_9ROSA	8.5e-35	75.47	RWP-RK domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_1056...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003035	RWP-RK_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy1G002330	CsGy1G002330	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy1G002330.1	CsGy1G002330.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G002330.1.exon.1	CsGy1G002330.1.exon.1	exon
CsGy1G002330.1.exon.2	CsGy1G002330.1.exon.2	exon
CsGy1G002330.1.exon.3	CsGy1G002330.1.exon.3	exon
CsGy1G002330.1.exon.4	CsGy1G002330.1.exon.4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G002330.1.CDS.1	CsGy1G002330.1.CDS.1	CDS
CsGy1G002330.1.CDS.2	CsGy1G002330.1.CDS.2	CDS
CsGy1G002330.1.CDS.3	CsGy1G002330.1.CDS.3	CDS
CsGy1G002330.1.CDS.4	CsGy1G002330.1.CDS.4	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 220..240
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..140
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..127
None	No IPR available	PANTHER	PTHR32002	FAMILY NOT NAMED	coord: 155..265
None	No IPR available	PANTHER	PTHR32002:SF24	PROTEIN RKD5	coord: 155..265
IPR003035	RWP-RK domain	PFAM	PF02042	RWP-RK	coord: 149..196 e-value: 3.3E-20 score: 71.7
IPR003035	RWP-RK domain	PROSITE	PS51519	RWP_RK	coord: 132..216 score: 16.95