CsGy1G002290.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G002290.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	myb-related protein 306-like
Location	Chr1 : 1448475 .. 1448753 (+)
Sequence length	279

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGAAGTAGAAATTCAGAATCAAGCAGCAGCTGCCAGAACAACAACAACAACAACAATACTAATTGTAGTAATTTGTGGGTGGAGGAAGAAATTAGTTATTATTCAAATAATAATAACAACAATGTACAAGAAGGTGGTGTTCCATTCAATTTGCTGGAGAAATGGTTGTTTGATGAAGCTGCACCAACACCTCAGTATCATCCTCAATATCAAAATGATCATTTCCTCAACCTGTCTTTGCAAGATTCTCAAACACCTTTCAGCTTTAATTAG

mRNA sequence

ATGGCAAGAAGTAGAAATTCAGAATCAAGCAGCAGCTGCCAGAACAACAACAACAACAACAATACTAATTGTAGTAATTTGTGGGTGGAGGAAGAAATTAGTTATTATTCAAATAATAATAACAACAATGTACAAGAAGGTGGTGTTCCATTCAATTTGCTGGAGAAATGGTTGTTTGATGAAGCTGCACCAACACCTCAGTATCATCCTCAATATCAAAATGATCATTTCCTCAACCTGTCTTTGCAAGATTCTCAAACACCTTTCAGCTTTAATTAG

Coding sequence (CDS)

ATGGCAAGAAGTAGAAATTCAGAATCAAGCAGCAGCTGCCAGAACAACAACAACAACAACAATACTAATTGTAGTAATTTGTGGGTGGAGGAAGAAATTAGTTATTATTCAAATAATAATAACAACAATGTACAAGAAGGTGGTGTTCCATTCAATTTGCTGGAGAAATGGTTGTTTGATGAAGCTGCACCAACACCTCAGTATCATCCTCAATATCAAAATGATCATTTCCTCAACCTGTCTTTGCAAGATTCTCAAACACCTTTCAGCTTTAATTAG

Protein sequence

MARSRNSESSSSCQNNNNNNNTNCSNLWVEEEISYYSNNNNNNVQEGGVPFNLLEKWLFDEAAPTPQYHPQYQNDHFLNLSLQDSQTPFSFN

Homology

[Close]

BLAST of CsGy1G002290.1 vs. NCBI nr
Match: KGN63666.1 (hypothetical protein Csa_1G009700 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 3.7e-19
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 47  GGVPFNLLEKWLFDEAAPTPQYHPQYQNDHFLNLSLQDSQTPFSFN 93
           GGVPFNLLEKWLFDEAAPTPQYHPQYQNDHFLNLSLQDSQTPFSFN
Sbjct: 286 GGVPFNLLEKWLFDEAAPTPQYHPQYQNDHFLNLSLQDSQTPFSFN 331

[Close]

BLAST of CsGy1G002290.1 vs. NCBI nr
Match: XP_008453202.1 (PREDICTED: myb-related protein 306-like [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 1.4e-10
Identity = 36/47 (76.60%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 47  GGVPFNLLEKWLFDEAAPTPQYHPQ----YQNDHFLNLSLQDSQTPF 90
           GGVPFNLLEKWLFDEAAPT Q+HPQ      +DHFL+LSLQDSQ PF
Sbjct: 290 GGVPFNLLEKWLFDEAAPTLQHHPQXXXXXXDDHFLHLSLQDSQAPF 336

[Close]

BLAST of CsGy1G002290.1 vs. TrEMBL
Match: tr|A0A0A0LUH3|A0A0A0LUH3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009700 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.4e-19
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 47  GGVPFNLLEKWLFDEAAPTPQYHPQYQNDHFLNLSLQDSQTPFSFN 93
           GGVPFNLLEKWLFDEAAPTPQYHPQYQNDHFLNLSLQDSQTPFSFN
Sbjct: 286 GGVPFNLLEKWLFDEAAPTPQYHPQYQNDHFLNLSLQDSQTPFSFN 331

[Close]

BLAST of CsGy1G002290.1 vs. TrEMBL
Match: tr|A0A1S3BVP0|A0A1S3BVP0_CUCME (myb-related protein 306-like OS=Cucumis melo OX=3656 GN=LOC103493990 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.2e-11
Identity = 36/47 (76.60%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 47  GGVPFNLLEKWLFDEAAPTPQYHPQ----YQNDHFLNLSLQDSQTPF 90
           GGVPFNLLEKWLFDEAAPT Q+HPQ      +DHFL+LSLQDSQ PF
Sbjct: 290 GGVPFNLLEKWLFDEAAPTLQHHPQXXXXXXDDHFLHLSLQDSQAPF 336

The following BLAST results are available for this feature:

BLAST of CsGy1G002290.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63666.1	3.7e-19	100.00	hypothetical protein Csa_1G009700 [Cucumis sativus]	[more]
XP_008453202.1	1.4e-10	76.60	PREDICTED: myb-related protein 306-like [Cucumis melo]	[more]

BLAST of CsGy1G002290.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G002290.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G002290.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LUH3\|A0A0A0LUH3_CUCSA	2.4e-19	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009700 PE=4 SV=1	[more]
tr\|A0A1S3BVP0\|A0A1S3BVP0_CUCME	9.2e-11	76.60	myb-related protein 306-like OS=Cucumis melo OX=3656 GN=LOC103493990 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010200	response to chitin
biological_process	GO:0009739	response to gibberellin
biological_process	GO:0009751	response to salicylic acid
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy1G002290	CsGy1G002290	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G002290.1.exon.1	CsGy1G002290.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G002290.1.CDS.1	CsGy1G002290.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy1G002290.1	CsGy1G002290.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24