CsGy1G002290 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G002290
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionmyb-related protein 306-like
LocationChr1 : 1448475 .. 1448753 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGAAGTAGAAATTCAGAATCAAGCAGCAGCTGCCAGAACAACAACAACAACAACAATACTAATTGTAGTAATTTGTGGGTGGAGGAAGAAATTAGTTATTATTCAAATAATAATAACAACAATGTACAAGAAGGTGGTGTTCCATTCAATTTGCTGGAGAAATGGTTGTTTGATGAAGCTGCACCAACACCTCAGTATCATCCTCAATATCAAAATGATCATTTCCTCAACCTGTCTTTGCAAGATTCTCAAACACCTTTCAGCTTTAATTAG

mRNA sequence

ATGGCAAGAAGTAGAAATTCAGAATCAAGCAGCAGCTGCCAGAACAACAACAACAACAACAATACTAATTGTAGTAATTTGTGGGTGGAGGAAGAAATTAGTTATTATTCAAATAATAATAACAACAATGTACAAGAAGGTGGTGTTCCATTCAATTTGCTGGAGAAATGGTTGTTTGATGAAGCTGCACCAACACCTCAGTATCATCCTCAATATCAAAATGATCATTTCCTCAACCTGTCTTTGCAAGATTCTCAAACACCTTTCAGCTTTAATTAG

Coding sequence (CDS)

ATGGCAAGAAGTAGAAATTCAGAATCAAGCAGCAGCTGCCAGAACAACAACAACAACAACAATACTAATTGTAGTAATTTGTGGGTGGAGGAAGAAATTAGTTATTATTCAAATAATAATAACAACAATGTACAAGAAGGTGGTGTTCCATTCAATTTGCTGGAGAAATGGTTGTTTGATGAAGCTGCACCAACACCTCAGTATCATCCTCAATATCAAAATGATCATTTCCTCAACCTGTCTTTGCAAGATTCTCAAACACCTTTCAGCTTTAATTAG

Protein sequence

MARSRNSESSSSCQNNNNNNNTNCSNLWVEEEISYYSNNNNNNVQEGGVPFNLLEKWLFDEAAPTPQYHPQYQNDHFLNLSLQDSQTPFSFN
Homology
[Close]
BLAST of CsGy1G002290 vs. NCBI nr
Match: KGN63666.1 (hypothetical protein Csa_1G009700 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 3.7e-19
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0 

Query: 47  GGVPFNLLEKWLFDEAAPTPQYHPQYQNDHFLNLSLQDSQTPFSFN 93
           GGVPFNLLEKWLFDEAAPTPQYHPQYQNDHFLNLSLQDSQTPFSFN
Sbjct: 286 GGVPFNLLEKWLFDEAAPTPQYHPQYQNDHFLNLSLQDSQTPFSFN 331

[Close]
BLAST of CsGy1G002290 vs. NCBI nr
Match: XP_008453202.1 (PREDICTED: myb-related protein 306-like [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 1.4e-10
Identity = 36/47 (76.60%), Postives = 39/47 (82.98%), Query Frame = 0 

Query: 47  GGVPFNLLEKWLFDEAAPTPQYHPQ----YQNDHFLNLSLQDSQTPF 90
           GGVPFNLLEKWLFDEAAPT Q+HPQ      +DHFL+LSLQDSQ PF
Sbjct: 290 GGVPFNLLEKWLFDEAAPTLQHHPQXXXXXXDDHFLHLSLQDSQAPF 336

[Close]
BLAST of CsGy1G002290 vs. TrEMBL
Match: tr|A0A0A0LUH3|A0A0A0LUH3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009700 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.4e-19
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0 

Query: 47  GGVPFNLLEKWLFDEAAPTPQYHPQYQNDHFLNLSLQDSQTPFSFN 93
           GGVPFNLLEKWLFDEAAPTPQYHPQYQNDHFLNLSLQDSQTPFSFN
Sbjct: 286 GGVPFNLLEKWLFDEAAPTPQYHPQYQNDHFLNLSLQDSQTPFSFN 331

[Close]
BLAST of CsGy1G002290 vs. TrEMBL
Match: tr|A0A1S3BVP0|A0A1S3BVP0_CUCME (myb-related protein 306-like OS=Cucumis melo OX=3656 GN=LOC103493990 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.2e-11
Identity = 36/47 (76.60%), Postives = 39/47 (82.98%), Query Frame = 0 

Query: 47  GGVPFNLLEKWLFDEAAPTPQYHPQ----YQNDHFLNLSLQDSQTPF 90
           GGVPFNLLEKWLFDEAAPT Q+HPQ      +DHFL+LSLQDSQ PF
Sbjct: 290 GGVPFNLLEKWLFDEAAPTLQHHPQXXXXXXDDHFLHLSLQDSQAPF 336

The following BLAST results are available for this feature:
BLAST of CsGy1G002290 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63666.13.7e-19100.00hypothetical protein Csa_1G009700 [Cucumis sativus][more]
XP_008453202.11.4e-1076.60PREDICTED: myb-related protein 306-like [Cucumis melo][more]
BLAST of CsGy1G002290 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy1G002290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G002290 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LUH3|A0A0A0LUH3_CUCSA2.4e-19100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009700 PE=4 SV=1[more]
tr|A0A1S3BVP0|A0A1S3BVP0_CUCME9.2e-1176.60myb-related protein 306-like OS=Cucumis melo OX=3656 GN=LOC103493990 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010200 response to chitin
biological_process GO:0009739 response to gibberellin
biological_process GO:0009751 response to salicylic acid
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G002290.1CsGy1G002290.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G002290MELO3C017170.2Melon (DHL92) v3.6.1cgybmedB043
CsGy1G002290CsaV3_1G002300Cucumber (Chinese Long) v3cgybcucB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G002290Cucumber (Chinese Long) v3cgybcucB004
CsGy1G002290Cucumber (Chinese Long) v3cgybcucB039
CsGy1G002290Watermelon (97103) v2cgybwmbB076
CsGy1G002290Watermelon (97103) v2cgybwmbB054
CsGy1G002290Watermelon (97103) v2cgybwmbB058
CsGy1G002290Watermelon (97103) v2cgybwmbB088
CsGy1G002290Wax gourdcgybwgoB009
CsGy1G002290Wax gourdcgybwgoB067
CsGy1G002290Wax gourdcgybwgoB092
CsGy1G002290Cucumber (Gy14) v2cgybcgybB002
CsGy1G002290Cucumber (Gy14) v2cgybcgybB029
CsGy1G002290Cucurbita maxima (Rimu)cgybcmaB004
CsGy1G002290Cucurbita maxima (Rimu)cgybcmaB040
CsGy1G002290Cucurbita maxima (Rimu)cgybcmaB103
CsGy1G002290Cucurbita maxima (Rimu)cgybcmaB130
CsGy1G002290Cucurbita moschata (Rifu)cgybcmoB005
CsGy1G002290Cucurbita moschata (Rifu)cgybcmoB028
CsGy1G002290Cucurbita moschata (Rifu)cgybcmoB119
CsGy1G002290Cucurbita pepo (Zucchini)cgybcpeB014
CsGy1G002290Cucurbita pepo (Zucchini)cgybcpeB053
CsGy1G002290Cucurbita pepo (Zucchini)cgybcpeB061
CsGy1G002290Cucurbita pepo (Zucchini)cgybcpeB101
CsGy1G002290Cucurbita pepo (Zucchini)cgybcpeB108
CsGy1G002290Cucurbita pepo (Zucchini)cgybcpeB126
CsGy1G002290Cucumber (Chinese Long) v2cgybcuB001
CsGy1G002290Cucumber (Chinese Long) v2cgybcuB004
CsGy1G002290Bottle gourd (USVL1VR-Ls)cgyblsiB021
CsGy1G002290Bottle gourd (USVL1VR-Ls)cgyblsiB040
CsGy1G002290Bottle gourd (USVL1VR-Ls)cgyblsiB067
CsGy1G002290Melon (DHL92) v3.5.1cgybmeB007
CsGy1G002290Melon (DHL92) v3.5.1cgybmeB024
CsGy1G002290Melon (DHL92) v3.5.1cgybmeB048
CsGy1G002290Melon (DHL92) v3.6.1cgybmedB005
CsGy1G002290Melon (DHL92) v3.6.1cgybmedB024
CsGy1G002290Watermelon (Charleston Gray)cgybwcgB003
CsGy1G002290Watermelon (Charleston Gray)cgybwcgB054
CsGy1G002290Watermelon (Charleston Gray)cgybwcgB060
CsGy1G002290Watermelon (Charleston Gray)cgybwcgB078
CsGy1G002290Watermelon (97103) v1cgybwmB004
CsGy1G002290Watermelon (97103) v1cgybwmB065
CsGy1G002290Watermelon (97103) v1cgybwmB094
CsGy1G002290Wild cucumber (PI 183967)cgybcpiB001
CsGy1G002290Wild cucumber (PI 183967)cgybcpiB003
CsGy1G002290Wild cucumber (PI 183967)cgybcpiB031
CsGy1G002290Silver-seed gourdcarcgybB0371
CsGy1G002290Silver-seed gourdcarcgybB0611