CsGy1G000310.1 (mRNA) Cucumber (Gy14) v2

NameCsGy1G000310.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUnknown Protein
LocationChr1 : 160049 .. 163281 (+)
Sequence length384
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATATGATCTATAGACCATTCTTGTTGGTTTAGTCAACAATATTTATTATAATAATACTAAATAAATAAATTTAGAGAGAAAGGGTCCAATCCATATTATCCACCTACCTAGCATTAGTTTAATTAATATATTTTATTTAAAAAATTTAATTTTCTTGGTAACTAATTGTTGTAAGATCACATGGGAACCTAATTAAATTTGTAGAGGAACTTGCAATTGGTCATTTTCACTAAAATGTGAGGAGGTGATCAAATGTGGTACAATAAGGAATTAAATTAGTTAAAACTTAAAGATGCTTTCTCGGTCTTTGTCCATTGTGATCATTCACTAATAAATAAATTATATAGCCTCGGGAATGTATCTTAATTAGGAACACTATATATATTCTGTTATATATATTCATGATTAATTATCTTCATATTATAATCATTGATTTAATTAGACTCCACCAATCTTATGTACGCTTTATCCAATACTTGGTGTGTATAGATATGCATACATATATGTCCAAGGAAAGGGCATAAAGTTCACATACGAGATTGAAATGAGGCATTGGAAGCCAACCTATATTCCAAAAAGAAAATCTCAATGCCTTGAGATTTGGACCAACCAAACTCGGTCGGGTCGATAAATATATATCAATCAACCATAAACCAAAAAATTCGAACATGCATATCTTGCCTACCTTGAGCACTAGAAATGTCGACACAGTGTGTTACAGATGCAATCGAAGACATATATTTATAATGACAAACTTATAAATAATCGCATTTGACCACTCTACGAGAAAGAGATCTGACGACTTGTATTTCATTTTTATTTAGTTGAATTAGTCGTTCGTTAAATTGTACTAATTTAGGTATCAAAATGTAAAACTAATCTCTTACATACTGTAACTTTAGAGCATCTTAAGACTAGACTAGGAAGAAGTAAAGTTGAATTACGTCAAAGGCCAATGCAAACCTGCAACGAATCCCAATGGTAACGGTATCATGCAAAGCACCGATAATAATGTCAATTCGAAATCCAATGCATCCAACGTATACTAATGGTGTGTTGGATGTATATACCAAATTAATTTGGTATCAATAATAGTGAAGATTTCAAGAGTTGTCCTGTAGTATACTAATGTGCTGACAATCAAGCCTAAGCTAGTAATAATTAAACCCAACCAGCTACAAAAGTTGGCCATACGTCTCCATATATACTCTTTAGATTTTCACGATCGACTCCTATAATAAATATGATGATCATTTGATCCATCACGTGAGTGATGTCATACCGTACCTCTTATGGTTGACCATATAGATTAATGTAACCTCTCATTTAAAAATTTAATATTATATTATCTAACATTAGTCAAATATAACTAAACTTCTTTTGTCTCTATAGGACATTAATTAGCACAAAAGAGTAAATGCAAGAAGAAAAGATCTAGTAATAGTTAGAGGTTAATTAAAAATGCAAAATTTGAAACTAGAGACTAATTAAATTGAACTAAGTAGAATTATAATATTTTGAAATGAATGGTAAAATAGGTAGGTAGGGAAGAAAAATACATAAGAAAAAGAAAATTAATGATGATCTAATTCAGCTATATGGTTATGATTATAGTTCTCACCAACTTTTAGAGGTTTTCATTTTAAAATTTAATTTTGGGGAGTTGGCCTGAGGAAGAAGAAGGAGAATATAATATAAGGTCAATAGTTGTTTCTTTTTCTCTTTCTTTTTCTAAACACTAATATATAGTTAAATGGATTGGGTACTATCAGGTACATACAAATTGAAAAAAAAAAAAAGAAAAAAAGATGGGCTGATTAATTTGGTAGGAGGCATTTAATAAATTTTGTTTGTTTTAGTTGAAGGAAAAAGAGAAATGAGTGAGTGTGATATAATTATTTATATATATATATAGATGAATTAGAAATATTCTTTGAACCAATCAATATCAAAACTGGTAGCCTTAGCTGTATATCCCTTGTTTGAGTTAATGCCATTGAATTTCCCCCTTGAATCTTCCAAACTCCATTAGTACTAAAAACACAATTTGGCAAAAAGGATGTTTGTTTTTGGAATTTGTACTGCCACACCCCATTATTAATTTTTGCCAAACTCCATTTTTGCCGTAATTGAGCACCTAATCTCTGGTATTAATCCTCACCTTTTTTTCATCATCTATATGTTCTTCCTATAAGTCATTATATTCATTACGTACTTAAAAGACTAATTTTGTGTGGTTCACAATCAATAATATTACTGCACCTTCCCTTATTCCACAACACACACACCAATAATAATAACAATAATCATGCACACACACACACACACACACATATATATAACAATCATCAACTTGAAGTTTGGCGTTATTTGTGAATTTTAATTTAATTTACTAATTTCTAAACTACAAAGATCATTTTACTATATATGTACAATAGCTTAATTATGTTTATAGGTAATAATAGTATAATGAAAGTTTGACTGGGAGAAGAAGTGTTAATTTGAGTTGTTTGTTATTAATTAATAATTAGAGAGAGGTAAATTAATATAGATATATGAAAGGGGCACGTGAGAATGAATGGAATAACAATGATGATGATGTGTGGAATGTAAAAAAGAATAGAGGGGGAGTATATAACTATGTTAAGAAGTCAACTAGGAGTAGAAAAGGTATGGATTTTTGGAGGAGGTAAAGAATTTATAAGAATTATGTGCAAGAATATGATGATAATGATGAGGGGTAAGGGTTGGGAAATGGGTTTTGCACCGTCTGATTGGGTTAAAAATGTGATGGGGATCAGCACATGAAGTGCGATTACACATCAAAAGCCCCTTCCCACAGAATCTCTGGTAAATCTTGTTGGATCAATCCAAGATGCGAACTCCCCAAGTTGAGCAAGTGGCCATATATATATATATTATATATATATATATATATTTCTCTCTTTTTAAAATATCTACTCATCCCCCCATTCTTCTTCTTCTTCTTCTTCTTTTTTTTTTTTTTTTTGTGTTTAATTTGAAACAATTCCCTTCCAGTTACATCAGAATTATTAATATGATTCCAGTTCAGTAATTAGTATAGAGAGTTGATTAAGTGGTGTTCCCAATCACACGCAATTCAAGTCAGCTAATCAAAATGAATGTATATAATTGATTAATTAATTTTGAAATGAAAAAACTTTATAATAGGGGGTTTGCTTGTAACGGACTCTCATCTCTCGGCTAG

mRNA sequence

ATGTATATGATCTATAGACCATTCTTAGGAACTTGCAATTGGTCATTTTCACTAAAATGTGAGGAGATTTTCACGATCGACTCCTATAATAAATATGATGATCATTTGATCCATCACGTGAGTGATGTCATACCGTACCTCTTATGGACATTAATTAGCACAAAAGAATATATGAAAGGGGCACGTGAGAATGAATGGAATAACAATGATGATGATGTGTGGAATCACATGAAGTGCGATTACACATCAAAAGCCCCTTCCCACAGAATCTCTGGTAAATCTTGTTGGATCAATCCAAGATGCGAACTCCCCAATTACATCAGAATTATTAATATGATTCCAGTTCAGGGGTTTGCTTGTAACGGACTCTCATCTCTCGGCTAG

Coding sequence (CDS)

ATGTATATGATCTATAGACCATTCTTAGGAACTTGCAATTGGTCATTTTCACTAAAATGTGAGGAGATTTTCACGATCGACTCCTATAATAAATATGATGATCATTTGATCCATCACGTGAGTGATGTCATACCGTACCTCTTATGGACATTAATTAGCACAAAAGAATATATGAAAGGGGCACGTGAGAATGAATGGAATAACAATGATGATGATGTGTGGAATCACATGAAGTGCGATTACACATCAAAAGCCCCTTCCCACAGAATCTCTGGTAAATCTTGTTGGATCAATCCAAGATGCGAACTCCCCAATTACATCAGAATTATTAATATGATTCCAGTTCAGGGGTTTGCTTGTAACGGACTCTCATCTCTCGGCTAG

Protein sequence

MYMIYRPFLGTCNWSFSLKCEEIFTIDSYNKYDDHLIHHVSDVIPYLLWTLISTKEYMKGARENEWNNNDDDVWNHMKCDYTSKAPSHRISGKSCWINPRCELPNYIRIINMIPVQGFACNGLSSLG
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy1G000310CsGy1G000310gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy1G000310.1CsGy1G000310.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy1G000310.1.exon.1CsGy1G000310.1.exon.1exon
CsGy1G000310.1.exon.2CsGy1G000310.1.exon.2exon
CsGy1G000310.1.exon.3CsGy1G000310.1.exon.3exon
CsGy1G000310.1.exon.4CsGy1G000310.1.exon.4exon
CsGy1G000310.1.exon.5CsGy1G000310.1.exon.5exon
CsGy1G000310.1.exon.6CsGy1G000310.1.exon.6exon
CsGy1G000310.1.exon.7CsGy1G000310.1.exon.7exon
CsGy1G000310.1.exon.8CsGy1G000310.1.exon.8exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy1G000310.1.CDS.1CsGy1G000310.1.CDS.1CDS
CsGy1G000310.1.CDS.2CsGy1G000310.1.CDS.2CDS
CsGy1G000310.1.CDS.3CsGy1G000310.1.CDS.3CDS
CsGy1G000310.1.CDS.4CsGy1G000310.1.CDS.4CDS
CsGy1G000310.1.CDS.5CsGy1G000310.1.CDS.5CDS
CsGy1G000310.1.CDS.6CsGy1G000310.1.CDS.6CDS
CsGy1G000310.1.CDS.7CsGy1G000310.1.CDS.7CDS
CsGy1G000310.1.CDS.8CsGy1G000310.1.CDS.8CDS


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSUPERFAMILYSSF140924Duffy binding domain-likecoord: 51..106