Cp4.1LG19g02940.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG19g02940.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG19 : 2685714 .. 2685989 (+)
Sequence length276
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTGAGGGATTGGAAGTGGGCGTTGGTTGGGTTGGTTCTGGTGGGCGATTGCTTTACCAATGGAGTGGTGGTGGAAGGCAGTAGTAGGCGGTTCTGGATGTTCCCAATGAAGCCTCAGAAAGGGGGTTTTGAGTCATATGATTCAAACATGATTGCCACCTTGGGTATTGAATGCAAGTGTTGTGATGATGAGATTGGAGGTAAATGCAGTACTCACTTCGCCGCTGCTTCTTGCTCTCATCTCCGTTGTTCTCCTTGGAAACACTATTAG

mRNA sequence

ATGGATTTGAGGGATTGGAAGTGGGCGTTGGTTGGGTTGGTTCTGGTGGGCGATTGCTTTACCAATGGAGTGGTGGTGGAAGGCAGTAGTAGGCGGTTCTGGATGTTCCCAATGAAGCCTCAGAAAGGGGGTTTTGAGTCATATGATTCAAACATGATTGCCACCTTGGGTATTGAATGCAAGTGTTGTGATGATGAGATTGGAGGTAAATGCAGTACTCACTTCGCCGCTGCTTCTTGCTCTCATCTCCGTTGTTCTCCTTGGAAACACTATTAG

Coding sequence (CDS)

ATGGATTTGAGGGATTGGAAGTGGGCGTTGGTTGGGTTGGTTCTGGTGGGCGATTGCTTTACCAATGGAGTGGTGGTGGAAGGCAGTAGTAGGCGGTTCTGGATGTTCCCAATGAAGCCTCAGAAAGGGGGTTTTGAGTCATATGATTCAAACATGATTGCCACCTTGGGTATTGAATGCAAGTGTTGTGATGATGAGATTGGAGGTAAATGCAGTACTCACTTCGCCGCTGCTTCTTGCTCTCATCTCCGTTGTTCTCCTTGGAAACACTATTAG

Protein sequence

MDLRDWKWALVGLVLVGDCFTNGVVVEGSSRRFWMFPMKPQKGGFESYDSNMIATLGIECKCCDDEIGGKCSTHFAAASCSHLRCSPWKHY
Homology
[Close]
BLAST of Cp4.1LG19g02940.1 vs. TrEMBL
Match: A0A0A0KXD1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G303090 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 7.9e-17
Identity = 53/93 (56.99%), Postives = 62/93 (66.67%), Query Frame = 1 

Query: 1  MDLRDWKWALVGLVLVGDCFTNGV-VVEGSSRRFWMFP-MKPQKGGFESYDSNMIATLGI 60
          M   ++K   +G +L    F NGV VVEGSSR F + P +K QKG    YDS + AT+GI
Sbjct: 1  MGFVNFKCLFLGFLLTFVPFRNGVIVVEGSSRPFSISPILKLQKGFKGYYDSQIFATMGI 60

Query: 61 ECKCCDDEIGGKCSTHFAAASCSHLRCSPWKHY 92
          ECKCC DEIGGKCST F   SCS+L CSPWK Y
Sbjct: 61 ECKCC-DEIGGKCSTEF-TTSCSNLHCSPWKQY 91

[Close]
BLAST of Cp4.1LG19g02940.1 vs. TrEMBL
Match: A0A059BIU0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02995 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-07
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1 

Query: 49 DSNMIATLGIECKCCDDEIGGKCSTHFAAASCSHLRCSPWKH 91
          DSNM ATLG++CKCCD + GG+C + +A  SCS LRC PWK+
Sbjct: 37 DSNMYATLGVQCKCCDGK-GGECRSEWAEGSCSKLRCLPWKY 77

[Close]
BLAST of Cp4.1LG19g02940.1 vs. TrEMBL
Match: A0A059BH96_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02997 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-06
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 1 

Query: 49 DSNMIATLGIECKCCDDEIGGKCSTHFAAASCSHLRCSPWKH 91
          DS+M ATLG++CKCCD E  G+C + +A  SCS LRC PWK+
Sbjct: 37 DSSMYATLGVQCKCCDGE-RGECRSEWAEGSCSKLRCLPWKY 77

[Close]
BLAST of Cp4.1LG19g02940.1 vs. NCBI nr
Match: gi|700199152|gb|KGN54310.1| (hypothetical protein Csa_4G303090 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-16
Identity = 53/93 (56.99%), Postives = 62/93 (66.67%), Query Frame = 1 

Query: 1  MDLRDWKWALVGLVLVGDCFTNGV-VVEGSSRRFWMFP-MKPQKGGFESYDSNMIATLGI 60
          M   ++K   +G +L    F NGV VVEGSSR F + P +K QKG    YDS + AT+GI
Sbjct: 1  MGFVNFKCLFLGFLLTFVPFRNGVIVVEGSSRPFSISPILKLQKGFKGYYDSQIFATMGI 60

Query: 61 ECKCCDDEIGGKCSTHFAAASCSHLRCSPWKHY 92
          ECKCC DEIGGKCST F   SCS+L CSPWK Y
Sbjct: 61 ECKCC-DEIGGKCSTEF-TTSCSNLHCSPWKQY 91

[Close]
BLAST of Cp4.1LG19g02940.1 vs. NCBI nr
Match: gi|629099840|gb|KCW65605.1| (hypothetical protein EUGRSUZ_G02995 [Eucalyptus grandis])

HSP 1 Score: 63.5 bits (153), Expect = 2.1e-07
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1 

Query: 49 DSNMIATLGIECKCCDDEIGGKCSTHFAAASCSHLRCSPWKH 91
          DSNM ATLG++CKCCD + GG+C + +A  SCS LRC PWK+
Sbjct: 37 DSNMYATLGVQCKCCDGK-GGECRSEWAEGSCSKLRCLPWKY 77

[Close]
BLAST of Cp4.1LG19g02940.1 vs. NCBI nr
Match: gi|629099842|gb|KCW65607.1| (hypothetical protein EUGRSUZ_G02997 [Eucalyptus grandis])

HSP 1 Score: 60.1 bits (144), Expect = 2.4e-06
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 1 

Query: 49 DSNMIATLGIECKCCDDEIGGKCSTHFAAASCSHLRCSPWKH 91
          DS+M ATLG++CKCCD E  G+C + +A  SCS LRC PWK+
Sbjct: 37 DSSMYATLGVQCKCCDGE-RGECRSEWAEGSCSKLRCLPWKY 77

The following BLAST results are available for this feature:
BLAST of Cp4.1LG19g02940.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG19g02940.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXD1_CUCSA7.9e-1756.99Uncharacterized protein OS=Cucumis sativus GN=Csa_4G303090 PE=4 SV=1[more]
A0A059BIU0_EUCGR1.5e-0761.90Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02995 PE=4 SV=1[more]
A0A059BH96_EUCGR1.6e-0659.52Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02997 PE=4 SV=1[more]
BLAST of Cp4.1LG19g02940.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG19g02940.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199152|gb|KGN54310.1|1.1e-1656.99hypothetical protein Csa_4G303090 [Cucumis sativus][more]
gi|629099840|gb|KCW65605.1|2.1e-0761.90hypothetical protein EUGRSUZ_G02995 [Eucalyptus grandis][more]
gi|629099842|gb|KCW65607.1|2.4e-0659.52hypothetical protein EUGRSUZ_G02997 [Eucalyptus grandis][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG19g02940Cp4.1LG19g02940gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG19g02940.1:cds:001Cp4.1LG19g02940.1:cds:001CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG19g02940.1Cp4.1LG19g02940.1-proteinpolypeptide