Cp4.1LG19g02940 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG19g02940
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG19 : 2685714 .. 2685989 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTGAGGGATTGGAAGTGGGCGTTGGTTGGGTTGGTTCTGGTGGGCGATTGCTTTACCAATGGAGTGGTGGTGGAAGGCAGTAGTAGGCGGTTCTGGATGTTCCCAATGAAGCCTCAGAAAGGGGGTTTTGAGTCATATGATTCAAACATGATTGCCACCTTGGGTATTGAATGCAAGTGTTGTGATGATGAGATTGGAGGTAAATGCAGTACTCACTTCGCCGCTGCTTCTTGCTCTCATCTCCGTTGTTCTCCTTGGAAACACTATTAG

mRNA sequence

ATGGATTTGAGGGATTGGAAGTGGGCGTTGGTTGGGTTGGTTCTGGTGGGCGATTGCTTTACCAATGGAGTGGTGGTGGAAGGCAGTAGTAGGCGGTTCTGGATGTTCCCAATGAAGCCTCAGAAAGGGGGTTTTGAGTCATATGATTCAAACATGATTGCCACCTTGGGTATTGAATGCAAGTGTTGTGATGATGAGATTGGAGGTAAATGCAGTACTCACTTCGCCGCTGCTTCTTGCTCTCATCTCCGTTGTTCTCCTTGGAAACACTATTAG

Coding sequence (CDS)

ATGGATTTGAGGGATTGGAAGTGGGCGTTGGTTGGGTTGGTTCTGGTGGGCGATTGCTTTACCAATGGAGTGGTGGTGGAAGGCAGTAGTAGGCGGTTCTGGATGTTCCCAATGAAGCCTCAGAAAGGGGGTTTTGAGTCATATGATTCAAACATGATTGCCACCTTGGGTATTGAATGCAAGTGTTGTGATGATGAGATTGGAGGTAAATGCAGTACTCACTTCGCCGCTGCTTCTTGCTCTCATCTCCGTTGTTCTCCTTGGAAACACTATTAG

Protein sequence

MDLRDWKWALVGLVLVGDCFTNGVVVEGSSRRFWMFPMKPQKGGFESYDSNMIATLGIECKCCDDEIGGKCSTHFAAASCSHLRCSPWKHY
BLAST of Cp4.1LG19g02940 vs. TrEMBL
Match: A0A0A0KXD1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G303090 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 7.9e-17
Identity = 53/93 (56.99%), Postives = 62/93 (66.67%), Query Frame = 1

Query: 1  MDLRDWKWALVGLVLVGDCFTNGV-VVEGSSRRFWMFP-MKPQKGGFESYDSNMIATLGI 60
          M   ++K   +G +L    F NGV VVEGSSR F + P +K QKG    YDS + AT+GI
Sbjct: 1  MGFVNFKCLFLGFLLTFVPFRNGVIVVEGSSRPFSISPILKLQKGFKGYYDSQIFATMGI 60

Query: 61 ECKCCDDEIGGKCSTHFAAASCSHLRCSPWKHY 92
          ECKCC DEIGGKCST F   SCS+L CSPWK Y
Sbjct: 61 ECKCC-DEIGGKCSTEF-TTSCSNLHCSPWKQY 91

BLAST of Cp4.1LG19g02940 vs. TrEMBL
Match: A0A059BIU0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02995 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-07
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1

Query: 49 DSNMIATLGIECKCCDDEIGGKCSTHFAAASCSHLRCSPWKH 91
          DSNM ATLG++CKCCD + GG+C + +A  SCS LRC PWK+
Sbjct: 37 DSNMYATLGVQCKCCDGK-GGECRSEWAEGSCSKLRCLPWKY 77

BLAST of Cp4.1LG19g02940 vs. TrEMBL
Match: A0A059BH96_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02997 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-06
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 1

Query: 49 DSNMIATLGIECKCCDDEIGGKCSTHFAAASCSHLRCSPWKH 91
          DS+M ATLG++CKCCD E  G+C + +A  SCS LRC PWK+
Sbjct: 37 DSSMYATLGVQCKCCDGE-RGECRSEWAEGSCSKLRCLPWKY 77

BLAST of Cp4.1LG19g02940 vs. NCBI nr
Match: gi|700199152|gb|KGN54310.1| (hypothetical protein Csa_4G303090 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-16
Identity = 53/93 (56.99%), Postives = 62/93 (66.67%), Query Frame = 1

Query: 1  MDLRDWKWALVGLVLVGDCFTNGV-VVEGSSRRFWMFP-MKPQKGGFESYDSNMIATLGI 60
          M   ++K   +G +L    F NGV VVEGSSR F + P +K QKG    YDS + AT+GI
Sbjct: 1  MGFVNFKCLFLGFLLTFVPFRNGVIVVEGSSRPFSISPILKLQKGFKGYYDSQIFATMGI 60

Query: 61 ECKCCDDEIGGKCSTHFAAASCSHLRCSPWKHY 92
          ECKCC DEIGGKCST F   SCS+L CSPWK Y
Sbjct: 61 ECKCC-DEIGGKCSTEF-TTSCSNLHCSPWKQY 91

BLAST of Cp4.1LG19g02940 vs. NCBI nr
Match: gi|629099840|gb|KCW65605.1| (hypothetical protein EUGRSUZ_G02995 [Eucalyptus grandis])

HSP 1 Score: 63.5 bits (153), Expect = 2.1e-07
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1

Query: 49 DSNMIATLGIECKCCDDEIGGKCSTHFAAASCSHLRCSPWKH 91
          DSNM ATLG++CKCCD + GG+C + +A  SCS LRC PWK+
Sbjct: 37 DSNMYATLGVQCKCCDGK-GGECRSEWAEGSCSKLRCLPWKY 77

BLAST of Cp4.1LG19g02940 vs. NCBI nr
Match: gi|629099842|gb|KCW65607.1| (hypothetical protein EUGRSUZ_G02997 [Eucalyptus grandis])

HSP 1 Score: 60.1 bits (144), Expect = 2.4e-06
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 1

Query: 49 DSNMIATLGIECKCCDDEIGGKCSTHFAAASCSHLRCSPWKH 91
          DS+M ATLG++CKCCD E  G+C + +A  SCS LRC PWK+
Sbjct: 37 DSSMYATLGVQCKCCDGE-RGECRSEWAEGSCSKLRCLPWKY 77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KXD1_CUCSA7.9e-1756.99Uncharacterized protein OS=Cucumis sativus GN=Csa_4G303090 PE=4 SV=1[more]
A0A059BIU0_EUCGR1.5e-0761.90Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02995 PE=4 SV=1[more]
A0A059BH96_EUCGR1.6e-0659.52Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02997 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700199152|gb|KGN54310.1|1.1e-1656.99hypothetical protein Csa_4G303090 [Cucumis sativus][more]
gi|629099840|gb|KCW65605.1|2.1e-0761.90hypothetical protein EUGRSUZ_G02995 [Eucalyptus grandis][more]
gi|629099842|gb|KCW65607.1|2.4e-0659.52hypothetical protein EUGRSUZ_G02997 [Eucalyptus grandis][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG19g02940.1Cp4.1LG19g02940.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG19g02940MELO3C033485.2Melon (DHL92) v3.6.1cpemedB541
Cp4.1LG19g02940CsaV3_4G025600Cucumber (Chinese Long) v3cpecucB0611
Cp4.1LG19g02940CsGy4G014600Cucumber (Gy14) v2cgybcpeB532
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG19g02940Cucurbita moschata (Rifu)cmocpeB240
Cp4.1LG19g02940Cucurbita moschata (Rifu)cmocpeB619
Cp4.1LG19g02940Cucurbita moschata (Rifu)cmocpeB782
Cp4.1LG19g02940Cucurbita moschata (Rifu)cmocpeB817
Cp4.1LG19g02940Wild cucumber (PI 183967)cpecpiB499
Cp4.1LG19g02940Wild cucumber (PI 183967)cpecpiB481
Cp4.1LG19g02940Cucumber (Chinese Long) v2cpecuB480
Cp4.1LG19g02940Cucumber (Chinese Long) v2cpecuB496
Cp4.1LG19g02940Bottle gourd (USVL1VR-Ls)cpelsiB397
Cp4.1LG19g02940Bottle gourd (USVL1VR-Ls)cpelsiB404
Cp4.1LG19g02940Watermelon (Charleston Gray)cpewcgB422
Cp4.1LG19g02940Watermelon (Charleston Gray)cpewcgB432
Cp4.1LG19g02940Watermelon (97103) v1cpewmB474
Cp4.1LG19g02940Watermelon (97103) v1cpewmB485
Cp4.1LG19g02940Melon (DHL92) v3.5.1cpemeB442
Cp4.1LG19g02940Melon (DHL92) v3.5.1cpemeB462
Cp4.1LG19g02940Cucumber (Gy14) v2cgybcpeB373
Cp4.1LG19g02940Cucumber (Gy14) v2cgybcpeB812
Cp4.1LG19g02940Melon (DHL92) v3.6.1cpemedB522
Cp4.1LG19g02940Melon (DHL92) v3.6.1cpemedB525
Cp4.1LG19g02940Silver-seed gourdcarcpeB0227
Cp4.1LG19g02940Silver-seed gourdcarcpeB0790
Cp4.1LG19g02940Silver-seed gourdcarcpeB0830
Cp4.1LG19g02940Silver-seed gourdcarcpeB1390
Cp4.1LG19g02940Cucumber (Chinese Long) v3cpecucB0594
Cp4.1LG19g02940Cucumber (Chinese Long) v3cpecucB0621
Cp4.1LG19g02940Wax gourdcpewgoB0582
Cp4.1LG19g02940Wax gourdcpewgoB0591
Cp4.1LG19g02940Wax gourdcpewgoB0608
Cp4.1LG19g02940Cucurbita pepo (Zucchini)cpecpeB084
Cp4.1LG19g02940Cucurbita pepo (Zucchini)cpecpeB382
Cp4.1LG19g02940Cucurbita pepo (Zucchini)cpecpeB416
Cp4.1LG19g02940Cucurbita pepo (Zucchini)cpecpeB429
Cp4.1LG19g02940Cucumber (Gy14) v1cgycpeB0099
Cp4.1LG19g02940Cucumber (Gy14) v1cgycpeB0486
Cp4.1LG19g02940Cucurbita maxima (Rimu)cmacpeB278
Cp4.1LG19g02940Cucurbita maxima (Rimu)cmacpeB668
Cp4.1LG19g02940Cucurbita maxima (Rimu)cmacpeB829
Cp4.1LG19g02940Cucurbita maxima (Rimu)cmacpeB880