Cp4.1LG18g02350.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG18g02350.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Acyl carrier protein
Location	Cp4.1LG18 : 3991042 .. 3994045 (-)
Sequence length	904

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTCCCAAATACAAATAGGTTTTTTTTTTTTCCAACGAGCATCCATTTCTCAGAACTCTCGAAAGTTCATTTCTTTCACTTCCCATGGCGGCCAGAAACTCTCTGCTGAAGCATCTTAGGGTTCATGTTCAGGCCCTGCCTAAAACCAACAGCCCCATTTTCTACGTCAACCCTTTCAATGCGATTCGACGCCGTCTCTTTTCCGAGGAGGTTAGGGGTTCTTTTCTCGACAAATCGGAAGTCACCGACCGCGTCATTTCCGTTGTCAAGAAGTTTCAGAAAGTCGATCCTTCTAAGGTACGAGAAATGTTCTATTCCTTTTAGGATTTCTCTAATTTATTGTGTCTGATTGCAAATTAAATAATTTATTGAGTTTCTGCGAGCTTGGTTTTGTGTTTGCAGTGGTTCCAATTATGTTATTAGCTAAGAAATTTAGGGTTGATTTGGCTGGAAATATTAAGACAAGATGTAAAAACNTTATAAGAGGGATGTATAATCCATGATGTTTACAAAAGACCTTCCCAATTTGCAATGAGGGAGGTATAACTATAGGAAGTAAAAATATTACACAGTTTACACCAAGATATAGCTTGGTAAACAACATTGTCGAAAAGTTTTGTGTAGGTCTGTGTCGTTTCTGCAAATATTCTCTGATTTCTTTCTTTTCACAGATTCCAAAAGAAAGCCATGATGAGGTTTTTCCATAATAGGGCTTTTGCGTTCTTGAAAGGGTGGTCGTACGTTAAGGCCGTATCCAAAAAATCCTTTACCTCCCTAGGAAATGTGAGATGTCATCCGAATATATTAAGAATCGTTGTCCAGAAATTTTGAGTGTATGTGCATTGCATAAACAAGTGACTTTGTGATTCGTTTGCTTTCTTGCAAAGTGGACACCAATTTGGAGAGAGAGTGATGTATTTGCAAATTTGATCGGTAGCGAATTAGAAATGTATCGTATATCTATGTTTTATTAATGTACTAAGAAAAAGTTTAGGATAGGATACATAATTCAATAGAAATCTTCTTGAATCCTTCAAAAAACATCTTCTACTTCCAGGTACTAGGAAAAAAAATCATTCCACAATTGCATTCTTGGGGACCAAACAGTATAGCAATTATTTGGATCATACTTTCAGTATATACAATTTGTGTCCTCTATTATATACTTTTCTAGTTATTGGCCTCTCTTTTATAGATCAGAAAAGGTTTTTCCTCCTATTGAATTTGCCCCCTCTACTTTTCTAGACTGAAATGTACACTCACTATGTTTTTCCCCCTTAATTTGTTCCATCTTTTGCTCGAACTCATGCTTTTGGCATCTCTTAAGATTACTAATGTTCTTATGTTATTATAAAACTCATCACTCTAATTTGTTTTTTCAAAATTGATTTGTTTTTCCCCCTTAATTTGTTCCATCTTTTGCTCAAACTCATGCTTTTGGTATCTCGTAAGATTACTAATGTTCTTATGTTATTATAAAACTCATCACTCTAATTTGTTTTTTCAAAATTGATTTGTCTTTCCCCCTTAATTTGTTCCATCTTTTGCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTCTTTTCAGATTTTCTTTTAATTTGTAACTTTAAATTTACATTTTGATTCAATAAATAGTGTCTAAAGCTTAGATATTCTATGGATAAGTGTTCTTCTTCCTATGTAATTTTAAATATTGGTTTATGTATTTAAGTGTGCCATTGTCACCTTAGAGAGTGTTTTGCCTGTTTCTTTTGAGATAGGCCCTTGCCTTTGCGGGGGGGACTGCAAATCATATTAAGCTGTTGTCACATTAGAGCTATAGGCCCTTGCCTTTGCCTAATTCCATTTCTTTGAACGATGCTTTTGTTCCTAATATCGAACTGTAATATGTTGTTCTTGTTTCGGGAAGGCTCAGATTGAGACTCTTTTACAAGCTTTTTTTTTTTTTTACATAACTAGTAAGTGACCTCACTACCTATTAAGACAAGATCTCTCCTGTTGAATTTTCCCTTTAATCTTCATGGTCCTTGACTCCTTGGTGAACCAACACCCCCCAGTGAATGAATGGAAGTTTTATGGTATCTTAACTCGTGCGATCGATCCATTTTTTTGCCATCTTTCTTTCACTGATTGATAATTGGTATTATTAATTATCCGGCAGGTTACTCCAACAGCCCATTTCCAAAATGATCTAGGCTTGGATAGCTTAGATACTGTGGAGGTTGTGATGGCTCTTGAAGAAGAGTTCCGGTTTGAAATTCCCGACAACGAAGCAGACAAAATCAATGCTATCAACCTTGCAGTTGATTTTATTGCCTCTCACCCTCAAGCAAAATAGACGAAAGCCATACATGCTTTCACTCAGGTTCCTCCTATTTCGATGATAAAATTAGATACTGTTAGATGTCTCTTATTTGTCTCTCTGTATTTTGTTGGTGGTTTTCCATTTGTTATCCTAATTCTTATTGAAGAGAATGATACTTGGTTGAGCCAGCTTCAAGCTGCATGAGTTGAGGCAGACTGTTATTGGCTATACCAAACCTGCATGAGTTGATGCAGACTGTTATTGGGTTTAATGAATCAACTGAGTTTATGTTTCAATAATGATTTTATGAGCTTTTCCACGAACTTGTGAACTAGTTGAACATAACCCAACTAGGTAAGTCGTGCCTTCGATCTAGAGGTCATACGTCCAAATTCTCTCCTTGTTTTTTTAACTTTGCAAAAACGTGGA

mRNA sequence

TNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTCCCAAATACAAATAGGTTTTTTTTTTTTCCAACGAGCATCCATTTCTCAGAACTCTCGAAAGTTCATTTCTTTCACTTCCCATGGCGGCCAGAAACTCTCTGCTGAAGCATCTTAGGGTTCATGTTCAGGCCCTGCCTAAAACCAACAGCCCCATTTTCTACGTCAACCCTTTCAATGCGATTCGACGCCGTCTCTTTTCCGAGGAGGTTAGGGGTTCTTTTCTCGACAAATCGGAAGTCACCGACCGCGTCATTTCCGTTGTCAAGAAGTTTCAGAAAGTCGATCCTTCTAAGGTTACTCCAACAGCCCATTTCCAAAATGATCTAGGCTTGGATAGCTTAGATACTGTGGAGGTTGTGATGGCTCTTGAAGAAGAGTTCCGGTTTGAAATTCCCGACAACGAAGCAGACAAAATCAATGCTATCAACCTTGCAGTTGATTTTATTGCCTCTCACCCTCAAGCAAAATAGACGAAAGCCATACATGCTTTCACTCAGGTTCCTCCTATTTCGATGATAAAATTAGATACTGTTAGATGTCTCTTATTTGTCTCTCTGTATTTTGTTGGTGGTTTTCCATTTGTTATCCTAATTCTTATTGAAGAGAATGATACTTGGTTGAGCCAGCTTCAAGCTGCATGAGTTGAGGCAGACTGTTATTGGCTATACCAAACCTGCATGAGTTGATGCAGACTGTTATTGGGTTTAATGAATCAACTGAGTTTATGTTTCAATAATGATTTTATGAGCTTTTCCACGAACTTGTGAACTAGTTGAACATAACCCAACTAGGTAAGTCGTGCCTTCGATCTAGAGGTCATACGTCCAAATTCTCTCCTTGTTTTTTTAACTTTGCAAAAACGTGGA

Coding sequence (CDS)

ATGGCGGCCAGAAACTCTCTGCTGAAGCATCTTAGGGTTCATGTTCAGGCCCTGCCTAAAACCAACAGCCCCATTTTCTACGTCAACCCTTTCAATGCGATTCGACGCCGTCTCTTTTCCGAGGAGGTTAGGGGTTCTTTTCTCGACAAATCGGAAGTCACCGACCGCGTCATTTCCGTTGTCAAGAAGTTTCAGAAAGTCGATCCTTCTAAGGTTACTCCAACAGCCCATTTCCAAAATGATCTAGGCTTGGATAGCTTAGATACTGTGGAGGTTGTGATGGCTCTTGAAGAAGAGTTCCGGTTTGAAATTCCCGACAACGAAGCAGACAAAATCAATGCTATCAACCTTGCAGTTGATTTTATTGCCTCTCACCCTCAAGCAAAATAG

Protein sequence

MAARNSLLKHLRVHVQALPKTNSPIFYVNPFNAIRRRLFSEEVRGSFLDKSEVTDRVISVVKKFQKVDPSKVTPTAHFQNDLGLDSLDTVEVVMALEEEFRFEIPDNEADKINAINLAVDFIASHPQAK

Homology

[Close]

BLAST of Cp4.1LG18g02350.1 vs. Swiss-Prot
Match: ACPM2_ARATH (Acyl carrier protein 2, mitochondrial OS=Arabidopsis thaliana GN=MTACP2 PE=1 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 3.6e-45
Identity = 98/129 (75.97%), Postives = 111/129 (86.05%), Query Frame = 1


Query: 1   MAARNSLLKHLRVHVQALPKTNSPIFYVNPFNAIRRRLFSEEVRGSFLDKSEVTDRVISV 60
           MAAR ++L++LRV+V   P   +P   V PF+ + RR FSEEVRGSFLDKSEVTDRV+SV
Sbjct: 1   MAARGAMLRYLRVNVN--PTIQNPRECVLPFSILLRR-FSEEVRGSFLDKSEVTDRVLSV 60

Query: 61  VKKFQKVDPSKVTPTAHFQNDLGLDSLDTVEVVMALEEEFRFEIPDNEADKINAINLAVD 120
           VK FQKVDPSKVTP A+FQNDLGLDSLD+VEVVMALEEEF FEIPDNEADKI +I+LAVD
Sbjct: 61  VKNFQKVDPSKVTPKANFQNDLGLDSLDSVEVVMALEEEFGFEIPDNEADKIQSIDLAVD 120

Query: 121 FIASHPQAK 130
           FIASHPQAK
Sbjct: 121 FIASHPQAK 126

[Close]

BLAST of Cp4.1LG18g02350.1 vs. Swiss-Prot
Match: ACPM1_ARATH (Acyl carrier protein 1, mitochondrial OS=Arabidopsis thaliana GN=MTACP1 PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.1e-30
Identity = 70/128 (54.69%), Postives = 89/128 (69.53%), Query Frame = 1


Query: 1   MAARNSLLKHLRVHVQALPKTNSPIFYVNPFNAIRRRLFSEEVRGSFLDKSEVTDRVISV 60
           MA RN++L+HLRV VQ L    S I ++        R FS       L +  V DRV+ V
Sbjct: 1   MALRNAILRHLRVPVQTLGLNQSKIGFLGTI-----RSFSSH--DDHLSREAVVDRVLDV 60

Query: 61  VKKFQKVDPSKVTPTAHFQNDLGLDSLDTVEVVMALEEEFRFEIPDNEADKINAINLAVD 120
           VK F KVDPSKVTP  HFQNDLGLDSLDTVE+VMA+EEEF+ EIPD EADKI++ +LA++
Sbjct: 61  VKSFPKVDPSKVTPEVHFQNDLGLDSLDTVEIVMAIEEEFKLEIPDKEADKIDSCSLAIE 120

Query: 121 FIASHPQA 129
           ++ +HP +
Sbjct: 121 YVYNHPMS 121

[Close]

BLAST of Cp4.1LG18g02350.1 vs. Swiss-Prot
Match: ACPM_NEUCR (Acyl carrier protein, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=nuo-12 PE=1 SV=2)

HSP 1 Score: 102.4 bits (254), Expect = 3.7e-21
Identity = 60/115 (52.17%), Postives = 75/115 (65.22%), Query Frame = 1


Query: 15  VQALPKTNSPIFYVNPFNAIRRRLFSEEVRGSFLDKSEVTDRVISVVKKFQKV-DPSKVT 74
           VQA+PK       V  F A+R   +S    G  L K EV  R+  V+  F KV DP  +T
Sbjct: 31  VQAVPK-------VAAFQAVR--FYSA---GGHLKKDEVFSRIAQVLSGFDKVNDPKNIT 90

Query: 75  PTAHFQNDLGLDSLDTVEVVMALEEEFRFEIPDNEADKINAINLAVDFIASHPQA 129
            TAHF NDLGLDSLDTVEVVMA+EEEF  EIPD +AD+I++++ AV++I S P A
Sbjct: 91  ETAHFANDLGLDSLDTVEVVMAIEEEFSIEIPDKDADQIHSVDKAVEYILSQPDA 133

[Close]

BLAST of Cp4.1LG18g02350.1 vs. Swiss-Prot
Match: ACPM_SCHPO (Putative acyl carrier protein, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4H3.09 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 6.5e-18
Identity = 43/81 (53.09%), Postives = 59/81 (72.84%), Query Frame = 1


Query: 50  KSEVTDRVISVVKKFQKV-DPSKVTPTAHFQNDLGLDSLDTVEVVMALEEEFRFEIPDNE 109
           + +   R++ VV  F K+ DP KVTPT+ F NDLGLDSLD VEVVMA+EEEF  +IPD +
Sbjct: 32  RPDAEKRILKVVSSFDKIQDPKKVTPTSTFANDLGLDSLDAVEVVMAIEEEFSIQIPDKD 91

Query: 110 ADKINAINLAVDFIASHPQAK 130
           AD+I ++  A+ +I  +P+AK
Sbjct: 92  ADEITSVGDAISYITKNPEAK 112

[Close]

BLAST of Cp4.1LG18g02350.1 vs. Swiss-Prot
Match: ACPM3_ARATH (Acyl carrier protein 3, mitochondrial OS=Arabidopsis thaliana GN=MTACP2 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.6e-16
Identity = 52/126 (41.27%), Postives = 71/126 (56.35%), Query Frame = 1


Query: 4   RNSLLKHLRVHVQALPKTNSPIFYVNPFNAIRRRLFSEEVRGSFLDKSEVTDRVISVVKK 63
           R+S+L+HLR+ V   P   S +   N F +I    F+ E       + ++  RVI +VKK
Sbjct: 5   RSSILQHLRLRVSVRP--TSLLQNENGFKSIGIFNFTSEAAADG-GQDQILSRVIELVKK 64

Query: 64  FQKVDPSKVTPTAHFQNDLGLDSLDTVEVVMALEEEFRFEIPDNEADKINAINLAVDFIA 123
           + K + S+VT  A FQ DL LDSLD  E+VMA+EEEF  EIPD +ADK+        +I 
Sbjct: 65  YDKTNTSEVTERADFQKDLSLDSLDKTELVMAIEEEFSIEIPDEKADKLTCCGDVATYIL 124

Query: 124 SHPQAK 130
           S    K
Sbjct: 125 SETPTK 127

[Close]

BLAST of Cp4.1LG18g02350.1 vs. TrEMBL
Match: M5W1T8_PRUPE (Acyl carrier protein OS=Prunus persica GN=PRUPE_ppa013239mg PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 8.4e-49
Identity = 105/131 (80.15%), Postives = 117/131 (89.31%), Query Frame = 1


Query: 2   AARNSLLKHLRVHVQALPKTNS---PIFYVNPFNAIRRRLFSEEVRGSFLDKSEVTDRVI 61
           AAR+++LK+LRV V A+P   S   P+F ++PFNAIRRRLFSEEVRG+FLDKSEVTDRVI
Sbjct: 4   AARSAILKYLRVPVPAVPSNPSSTTPLF-LSPFNAIRRRLFSEEVRGTFLDKSEVTDRVI 63

Query: 62  SVVKKFQKVDPSKVTPTAHFQNDLGLDSLDTVEVVMALEEEFRFEIPDNEADKINAINLA 121
           SVVK FQKVDPSKVTP AHFQNDLGLDSLD VE+VMALEEEF FEIPDNEADKIN+I LA
Sbjct: 64  SVVKNFQKVDPSKVTPNAHFQNDLGLDSLDAVEIVMALEEEFGFEIPDNEADKINSIGLA 123

Query: 122 VDFIASHPQAK 130
           VDFI+SHPQAK
Sbjct: 124 VDFISSHPQAK 133

[Close]

BLAST of Cp4.1LG18g02350.1 vs. TrEMBL
Match: W9RQC9_9ROSA (Acyl carrier protein OS=Morus notabilis GN=L484_005582 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.9e-48
Identity = 104/131 (79.39%), Postives = 115/131 (87.79%), Query Frame = 1


Query: 1   MAARNSLLKHLRVHVQALPKTNSPI--FYVNPFNAIRRRLFSEEVRGSFLDKSEVTDRVI 60
           MAAR  LLKHLRV VQA+P+  S      ++ F+A+RRR FSEEVRGSFLDKSEVTDRVI
Sbjct: 1   MAARGLLLKHLRVQVQAVPQNPSSTGSLLLSSFHALRRRFFSEEVRGSFLDKSEVTDRVI 60

Query: 61  SVVKKFQKVDPSKVTPTAHFQNDLGLDSLDTVEVVMALEEEFRFEIPDNEADKINAINLA 120
           SVVK FQKVDP+KVTP AHFQNDLGLDSLD VE+VMALEEEFRFEIPDNEADKI++I+LA
Sbjct: 61  SVVKNFQKVDPAKVTPIAHFQNDLGLDSLDAVELVMALEEEFRFEIPDNEADKISSISLA 120

Query: 121 VDFIASHPQAK 130
           VDFIASHPQAK
Sbjct: 121 VDFIASHPQAK 131

[Close]

BLAST of Cp4.1LG18g02350.1 vs. TrEMBL
Match: E6Y2N3_TRISB (Acyl carrier protein OS=Triadica sebifera GN=acp PE=2 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 6.1e-47
Identity = 106/132 (80.30%), Postives = 117/132 (88.64%), Query Frame = 1


Query: 1   MAARNSLLKHLRVHVQAL---PKTNSPIFYVNPFNAIRRRLFSEEVRGSFLDKSEVTDRV 60
           MAAR +LLK+LR++VQ +   P+ NS +F ++ FN+I RR FSEEVRGSFLDKSEVTDRV
Sbjct: 1   MAARGALLKYLRINVQTVSQSPRPNSGLFALS-FNSIVRR-FSEEVRGSFLDKSEVTDRV 60

Query: 61  ISVVKKFQKVDPSKVTPTAHFQNDLGLDSLDTVEVVMALEEEFRFEIPDNEADKINAINL 120
           ISVVK FQKVDPSKVTP AHFQNDLGL SLDTVEVVMALEEEF FEIPDNEADKIN+INL
Sbjct: 61  ISVVKNFQKVDPSKVTPNAHFQNDLGLGSLDTVEVVMALEEEFGFEIPDNEADKINSINL 120

Query: 121 AVDFIASHPQAK 130
           AVDFIASHPQAK
Sbjct: 121 AVDFIASHPQAK 130

[Close]

BLAST of Cp4.1LG18g02350.1 vs. TrEMBL
Match: B9IQ34_POPTR (Acyl carrier protein OS=Populus trichocarpa GN=POPTR_0019s08300g PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.3e-46
Identity = 101/132 (76.52%), Postives = 116/132 (87.88%), Query Frame = 1


Query: 1   MAARNSLLKHLRVHVQALPKTNSPI---FYVNPFNAIRRRLFSEEVRGSFLDKSEVTDRV 60
           MAAR +LLK+LRV VQA+P T +P         FN+IRRR FSEEVRG+FLDKSEVTDRV
Sbjct: 1   MAARGALLKYLRVKVQAMPTTRNPNNNGLVGLSFNSIRRR-FSEEVRGTFLDKSEVTDRV 60

Query: 61  ISVVKKFQKVDPSKVTPTAHFQNDLGLDSLDTVEVVMALEEEFRFEIPDNEADKINAINL 120
           ++VVK FQKVDPSKVTP AHFQNDLGLDSLD+VE+VMALEEEF+FEIPDNEADKIN+I+L
Sbjct: 61  VNVVKNFQKVDPSKVTPDAHFQNDLGLDSLDSVEIVMALEEEFQFEIPDNEADKINSISL 120

Query: 121 AVDFIASHPQAK 130
           A+DFI+SHPQAK
Sbjct: 121 AIDFISSHPQAK 131

[Close]

BLAST of Cp4.1LG18g02350.1 vs. TrEMBL
Match: A9PBC4_POPTR (Acyl carrier protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 5.1e-46
Identity = 100/132 (75.76%), Postives = 115/132 (87.12%), Query Frame = 1


Query: 1   MAARNSLLKHLRVHVQALPKTNSPI---FYVNPFNAIRRRLFSEEVRGSFLDKSEVTDRV 60
           MAAR +LLK+LRV VQA+P T +P         FN+IRRR FSEEVRG+FLDKSEVTDRV
Sbjct: 1   MAARGALLKYLRVKVQAMPTTRNPNNNGLVGLSFNSIRRR-FSEEVRGTFLDKSEVTDRV 60

Query: 61  ISVVKKFQKVDPSKVTPTAHFQNDLGLDSLDTVEVVMALEEEFRFEIPDNEADKINAINL 120
           ++VVK FQKVDPSKVTP AHFQNDLGLDSLD+VE+VMALEEEF+FEIPDNEAD IN+I+L
Sbjct: 61  VNVVKNFQKVDPSKVTPDAHFQNDLGLDSLDSVEIVMALEEEFQFEIPDNEADNINSISL 120

Query: 121 AVDFIASHPQAK 130
           A+DFI+SHPQAK
Sbjct: 121 AIDFISSHPQAK 131

[Close]

BLAST of Cp4.1LG18g02350.1 vs. TAIR10
Match: AT1G65290.1 (AT1G65290.1 mitochondrial acyl carrier protein 2)

HSP 1 Score: 182.2 bits (461), Expect = 2.1e-46
Identity = 98/129 (75.97%), Postives = 111/129 (86.05%), Query Frame = 1


Query: 1   MAARNSLLKHLRVHVQALPKTNSPIFYVNPFNAIRRRLFSEEVRGSFLDKSEVTDRVISV 60
           MAAR ++L++LRV+V   P   +P   V PF+ + RR FSEEVRGSFLDKSEVTDRV+SV
Sbjct: 1   MAARGAMLRYLRVNVN--PTIQNPRECVLPFSILLRR-FSEEVRGSFLDKSEVTDRVLSV 60

Query: 61  VKKFQKVDPSKVTPTAHFQNDLGLDSLDTVEVVMALEEEFRFEIPDNEADKINAINLAVD 120
           VK FQKVDPSKVTP A+FQNDLGLDSLD+VEVVMALEEEF FEIPDNEADKI +I+LAVD
Sbjct: 61  VKNFQKVDPSKVTPKANFQNDLGLDSLDSVEVVMALEEEFGFEIPDNEADKIQSIDLAVD 120

Query: 121 FIASHPQAK 130
           FIASHPQAK
Sbjct: 121 FIASHPQAK 126

[Close]

BLAST of Cp4.1LG18g02350.1 vs. TAIR10
Match: AT2G44620.1 (AT2G44620.1 mitochondrial acyl carrier protein 1)

HSP 1 Score: 134.0 bits (336), Expect = 6.4e-32
Identity = 70/128 (54.69%), Postives = 89/128 (69.53%), Query Frame = 1


Query: 1   MAARNSLLKHLRVHVQALPKTNSPIFYVNPFNAIRRRLFSEEVRGSFLDKSEVTDRVISV 60
           MA RN++L+HLRV VQ L    S I ++        R FS       L +  V DRV+ V
Sbjct: 1   MALRNAILRHLRVPVQTLGLNQSKIGFLGTI-----RSFSSH--DDHLSREAVVDRVLDV 60

Query: 61  VKKFQKVDPSKVTPTAHFQNDLGLDSLDTVEVVMALEEEFRFEIPDNEADKINAINLAVD 120
           VK F KVDPSKVTP  HFQNDLGLDSLDTVE+VMA+EEEF+ EIPD EADKI++ +LA++
Sbjct: 61  VKSFPKVDPSKVTPEVHFQNDLGLDSLDTVEIVMAIEEEFKLEIPDKEADKIDSCSLAIE 120

Query: 121 FIASHPQA 129
           ++ +HP +
Sbjct: 121 YVYNHPMS 121

[Close]

BLAST of Cp4.1LG18g02350.1 vs. TAIR10
Match: AT5G47630.1 (AT5G47630.1 mitochondrial acyl carrier protein 3)

HSP 1 Score: 87.0 bits (214), Expect = 9.0e-18
Identity = 52/126 (41.27%), Postives = 71/126 (56.35%), Query Frame = 1


Query: 4   RNSLLKHLRVHVQALPKTNSPIFYVNPFNAIRRRLFSEEVRGSFLDKSEVTDRVISVVKK 63
           R+S+L+HLR+ V   P   S +   N F +I    F+ E       + ++  RVI +VKK
Sbjct: 5   RSSILQHLRLRVSVRP--TSLLQNENGFKSIGIFNFTSEAAADG-GQDQILSRVIELVKK 64

Query: 64  FQKVDPSKVTPTAHFQNDLGLDSLDTVEVVMALEEEFRFEIPDNEADKINAINLAVDFIA 123
           + K + S+VT  A FQ DL LDSLD  E+VMA+EEEF  EIPD +ADK+        +I 
Sbjct: 65  YDKTNTSEVTERADFQKDLSLDSLDKTELVMAIEEEFSIEIPDEKADKLTCCGDVATYIL 124

Query: 124 SHPQAK 130
           S    K
Sbjct: 125 SETPTK 127

[Close]

BLAST of Cp4.1LG18g02350.1 vs. TAIR10
Match: AT3G05020.1 (AT3G05020.1 acyl carrier protein 1)

HSP 1 Score: 60.8 bits (146), Expect = 6.9e-10
Identity = 34/89 (38.20%), Postives = 49/89 (55.06%), Query Frame = 1


Query: 34  IRRRLFSEEVRGSFLDKSEVTDRVISVVKKFQKVDPSKVTPTAHFQNDLGLDSLDTVEVV 93
           +RR + S  +  S   K E  ++V ++VKK   + P K         DLG DSLDTVE+V
Sbjct: 41  LRRSIPSRRLSVSCAAKQETIEKVSAIVKKQLSLTPDKKVVAETKFADLGADSLDTVEIV 100

Query: 94  MALEEEFRFEIPDNEADKINAINLAVDFI 123
           M LEEEF  ++ + +A KI  +  A + I
Sbjct: 101 MGLEEEFNIQMAEEKAQKIATVEQAAELI 129

[Close]

BLAST of Cp4.1LG18g02350.1 vs. TAIR10
Match: AT5G27200.1 (AT5G27200.1 acyl carrier protein 5)

HSP 1 Score: 57.0 bits (136), Expect = 1.0e-08
Identity = 37/95 (38.95%), Postives = 48/95 (50.53%), Query Frame = 1


Query: 36  RRLFSEEVRGSFLDKSEVTDRVISVVKK-FQKVDPSKVTPTAHFQNDLGLDSLDTVEVVM 95
           RRL    +  S   K E  ++V  +VKK     D  KVT    F  +LG DSLDTVE+VM
Sbjct: 44  RRLMPARLAVSCAVKQETVEKVSEIVKKQLSLTDDQKVTAGTKF-TELGADSLDTVEIVM 103

Query: 96  ALEEEFRFEIPDNEADKINAINLAVDFIASHPQAK 130
            LEEEF   + +  A +I  +  A + I    Q K
Sbjct: 104 GLEEEFGITMAEERAKEIATVQQAAELIEELVQEK 137

[Close]

BLAST of Cp4.1LG18g02350.1 vs. NCBI nr
Match: gi|595830791|ref|XP_007206137.1| (hypothetical protein PRUPE_ppa013239mg [Prunus persica])

HSP 1 Score: 201.1 bits (510), Expect = 1.2e-48
Identity = 105/131 (80.15%), Postives = 117/131 (89.31%), Query Frame = 1


Query: 2   AARNSLLKHLRVHVQALPKTNS---PIFYVNPFNAIRRRLFSEEVRGSFLDKSEVTDRVI 61
           AAR+++LK+LRV V A+P   S   P+F ++PFNAIRRRLFSEEVRG+FLDKSEVTDRVI
Sbjct: 4   AARSAILKYLRVPVPAVPSNPSSTTPLF-LSPFNAIRRRLFSEEVRGTFLDKSEVTDRVI 63

Query: 62  SVVKKFQKVDPSKVTPTAHFQNDLGLDSLDTVEVVMALEEEFRFEIPDNEADKINAINLA 121
           SVVK FQKVDPSKVTP AHFQNDLGLDSLD VE+VMALEEEF FEIPDNEADKIN+I LA
Sbjct: 64  SVVKNFQKVDPSKVTPNAHFQNDLGLDSLDAVEIVMALEEEFGFEIPDNEADKINSIGLA 123

Query: 122 VDFIASHPQAK 130
           VDFI+SHPQAK
Sbjct: 124 VDFISSHPQAK 133

[Close]

BLAST of Cp4.1LG18g02350.1 vs. NCBI nr
Match: gi|703116829|ref|XP_010101233.1| (Acyl carrier protein 2 [Morus notabilis])

HSP 1 Score: 199.9 bits (507), Expect = 2.7e-48
Identity = 104/131 (79.39%), Postives = 115/131 (87.79%), Query Frame = 1


Query: 1   MAARNSLLKHLRVHVQALPKTNSPI--FYVNPFNAIRRRLFSEEVRGSFLDKSEVTDRVI 60
           MAAR  LLKHLRV VQA+P+  S      ++ F+A+RRR FSEEVRGSFLDKSEVTDRVI
Sbjct: 1   MAARGLLLKHLRVQVQAVPQNPSSTGSLLLSSFHALRRRFFSEEVRGSFLDKSEVTDRVI 60

Query: 61  SVVKKFQKVDPSKVTPTAHFQNDLGLDSLDTVEVVMALEEEFRFEIPDNEADKINAINLA 120
           SVVK FQKVDP+KVTP AHFQNDLGLDSLD VE+VMALEEEFRFEIPDNEADKI++I+LA
Sbjct: 61  SVVKNFQKVDPAKVTPIAHFQNDLGLDSLDAVELVMALEEEFRFEIPDNEADKISSISLA 120

Query: 121 VDFIASHPQAK 130
           VDFIASHPQAK
Sbjct: 121 VDFIASHPQAK 131

[Close]

BLAST of Cp4.1LG18g02350.1 vs. NCBI nr
Match: gi|694365439|ref|XP_009361580.1| (PREDICTED: acyl carrier protein 2, mitochondrial-like [Pyrus x bretschneideri])

HSP 1 Score: 195.7 bits (496), Expect = 5.1e-47
Identity = 102/131 (77.86%), Postives = 116/131 (88.55%), Query Frame = 1


Query: 2   AARNSLLKHLRVHVQALPKTNS---PIFYVNPFNAIRRRLFSEEVRGSFLDKSEVTDRVI 61
           +ARN LLKHLRV VQA+P   S   P+F ++PF AIRRRLFSEEVRG+FLDKSEVTDRV+
Sbjct: 4   SARNVLLKHLRVQVQAVPSNPSSTVPLF-LSPFAAIRRRLFSEEVRGTFLDKSEVTDRVV 63

Query: 62  SVVKKFQKVDPSKVTPTAHFQNDLGLDSLDTVEVVMALEEEFRFEIPDNEADKINAINLA 121
           SVVK FQKVDPSKVTP A+F++DLGLDSLD+VE+VMALEEEF FEIPDNEADKI +I LA
Sbjct: 64  SVVKNFQKVDPSKVTPNANFESDLGLDSLDSVEIVMALEEEFGFEIPDNEADKIKSIGLA 123

Query: 122 VDFIASHPQAK 130
           VDFI+SHPQAK
Sbjct: 124 VDFISSHPQAK 133

[Close]

BLAST of Cp4.1LG18g02350.1 vs. NCBI nr
Match: gi|657958634|ref|XP_008370844.1| (PREDICTED: acyl carrier protein 2, mitochondrial [Malus domestica])

HSP 1 Score: 195.7 bits (496), Expect = 5.1e-47
Identity = 102/131 (77.86%), Postives = 116/131 (88.55%), Query Frame = 1


Query: 2   AARNSLLKHLRVHVQALPKTNS---PIFYVNPFNAIRRRLFSEEVRGSFLDKSEVTDRVI 61
           +ARN LLKHLRV VQA+P   S   P+F ++PF AIRRRLFSEEVRG+FLDKSEVTDRV+
Sbjct: 4   SARNVLLKHLRVQVQAVPSNPSSTAPLF-LSPFAAIRRRLFSEEVRGTFLDKSEVTDRVV 63

Query: 62  SVVKKFQKVDPSKVTPTAHFQNDLGLDSLDTVEVVMALEEEFRFEIPDNEADKINAINLA 121
           SVVK FQKVDPSKVTP A+F++DLGLDSLD+VE+VMALEEEF FEIPDNEADKI +I LA
Sbjct: 64  SVVKNFQKVDPSKVTPNANFESDLGLDSLDSVEIVMALEEEFGFEIPDNEADKIKSIGLA 123

Query: 122 VDFIASHPQAK 130
           VDFI+SHPQAK
Sbjct: 124 VDFISSHPQAK 133

[Close]

BLAST of Cp4.1LG18g02350.1 vs. NCBI nr
Match: gi|658020750|ref|XP_008345753.1| (PREDICTED: acyl carrier protein 2, mitochondrial-like [Malus domestica])

HSP 1 Score: 195.7 bits (496), Expect = 5.1e-47
Identity = 102/131 (77.86%), Postives = 116/131 (88.55%), Query Frame = 1


Query: 2   AARNSLLKHLRVHVQALPKTNS---PIFYVNPFNAIRRRLFSEEVRGSFLDKSEVTDRVI 61
           +ARN LLKHLRV VQA+P   S   P+F ++PF AIRRRLFSEEVRG+FLDKSEVTDRV+
Sbjct: 4   SARNVLLKHLRVQVQAVPSNPSSTXPLF-LSPFAAIRRRLFSEEVRGTFLDKSEVTDRVV 63

Query: 62  SVVKKFQKVDPSKVTPTAHFQNDLGLDSLDTVEVVMALEEEFRFEIPDNEADKINAINLA 121
           SVVK FQKVDPSKVTP A+F++DLGLDSLD+VE+VMALEEEF FEIPDNEADKI +I LA
Sbjct: 64  SVVKNFQKVDPSKVTPNANFESDLGLDSLDSVEIVMALEEEFGFEIPDNEADKIKSIGLA 123

Query: 122 VDFIASHPQAK 130
           VDFI+SHPQAK
Sbjct: 124 VDFISSHPQAK 133

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g02350.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ACPM2_ARATH	3.6e-45	75.97	Acyl carrier protein 2, mitochondrial OS=Arabidopsis thaliana GN=MTACP2 PE=1 SV=...	[more]
ACPM1_ARATH	1.1e-30	54.69	Acyl carrier protein 1, mitochondrial OS=Arabidopsis thaliana GN=MTACP1 PE=2 SV=...	[more]
ACPM_NEUCR	3.7e-21	52.17	Acyl carrier protein, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74...	[more]
ACPM_SCHPO	6.5e-18	53.09	Putative acyl carrier protein, mitochondrial OS=Schizosaccharomyces pombe (strai...	[more]
ACPM3_ARATH	1.6e-16	41.27	Acyl carrier protein 3, mitochondrial OS=Arabidopsis thaliana GN=MTACP2 PE=2 SV=...	[more]

BLAST of Cp4.1LG18g02350.1 vs. TrEMBL


Match Name	E-value	Identity	Description
M5W1T8_PRUPE	8.4e-49	80.15	Acyl carrier protein OS=Prunus persica GN=PRUPE_ppa013239mg PE=3 SV=1	[more]
W9RQC9_9ROSA	1.9e-48	79.39	Acyl carrier protein OS=Morus notabilis GN=L484_005582 PE=3 SV=1	[more]
E6Y2N3_TRISB	6.1e-47	80.30	Acyl carrier protein OS=Triadica sebifera GN=acp PE=2 SV=1	[more]
B9IQ34_POPTR	1.3e-46	76.52	Acyl carrier protein OS=Populus trichocarpa GN=POPTR_0019s08300g PE=3 SV=1	[more]
A9PBC4_POPTR	5.1e-46	75.76	Acyl carrier protein OS=Populus trichocarpa PE=2 SV=1	[more]

BLAST of Cp4.1LG18g02350.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G65290.1	2.1e-46	75.97	mitochondrial acyl carrier protein 2	[more]
AT2G44620.1	6.4e-32	54.69	mitochondrial acyl carrier protein 1	[more]
AT5G47630.1	9.0e-18	41.27	mitochondrial acyl carrier protein 3	[more]
AT3G05020.1	6.9e-10	38.20	acyl carrier protein 1	[more]
AT5G27200.1	1.0e-08	38.95	acyl carrier protein 5	[more]

BLAST of Cp4.1LG18g02350.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|595830791\|ref\|XP_007206137.1\|	1.2e-48	80.15	hypothetical protein PRUPE_ppa013239mg [Prunus persica]	[more]
gi\|703116829\|ref\|XP_010101233.1\|	2.7e-48	79.39	Acyl carrier protein 2 [Morus notabilis]	[more]
gi\|694365439\|ref\|XP_009361580.1\|	5.1e-47	77.86	PREDICTED: acyl carrier protein 2, mitochondrial-like [Pyrus x bretschneideri]	[more]
gi\|657958634\|ref\|XP_008370844.1\|	5.1e-47	77.86	PREDICTED: acyl carrier protein 2, mitochondrial [Malus domestica]	[more]
gi\|658020750\|ref\|XP_008345753.1\|	5.1e-47	77.86	PREDICTED: acyl carrier protein 2, mitochondrial-like [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0006633	fatty acid biosynthetic process

Vocabulary: **INTERPRO**
Term	Definition
IPR009081	PP-bd_ACP
IPR006162	Ppantetheine_attach_site
IPR003231	Acyl_carrier

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006633	fatty acid biosynthetic process
biological_process	GO:0042335	cuticle development
biological_process	GO:0009409	response to cold
biological_process	GO:0000038	very long-chain fatty acid metabolic process
cellular_component	GO:0005759	mitochondrial matrix
molecular_function	GO:0050897	cobalt ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG18g02350	Cp4.1LG18g02350	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG18g02350.1:five_prime_utr:001	Cp4.1LG18g02350.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG18g02350.1:cds:002	Cp4.1LG18g02350.1:cds:002	CDS
Cp4.1LG18g02350.1:cds:001	Cp4.1LG18g02350.1:cds:001	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG18g02350.1:three_prime_utr:001	Cp4.1LG18g02350.1:three_prime_utr:001	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG18g02350.1	Cp4.1LG18g02350.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003231	Acyl carrier protein (ACP)	PRODOM	PD000887		coord: 90..125 score: 5.0
IPR003231	Acyl carrier protein (ACP)	HAMAP	MF_01217	Acyl_carrier	coord: 52..126 score: 17
IPR003231	Acyl carrier protein (ACP)	TIGRFAMs	TIGR00517	TIGR00517	coord: 51..125 score: 5.9
IPR006162	Phosphopantetheine attachment site	PROSITE	PS00012	PHOSPHOPANTETHEINE	coord: 81..96 scor
IPR009081	Phosphopantetheine binding ACP domain	GENE3D	G3DSA:1.10.1200.10		coord: 43..129 score: 8.1
IPR009081	Phosphopantetheine binding ACP domain	PFAM	PF00550	PP-binding	coord: 55..111 score: 4.6
IPR009081	Phosphopantetheine binding ACP domain	PROFILE	PS50075	ACP_DOMAIN	coord: 53..123 score: 14
IPR009081	Phosphopantetheine binding ACP domain	unknown	SSF47336	ACP-like	coord: 49..125 score: 1.44
None	No IPR available	PANTHER	PTHR20863	ACYL CARRIER PROTEIN/ZINC FINGER PROTEIN 593-RELATED	coord: 1..129 score: 1.9
None	No IPR available	PANTHER	PTHR20863:SF30	SUBFAMILY NOT NAMED	coord: 1..129 score: 1.9