Cp4.1LG18g00410.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG18g00410.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	60S ribosomal protein L18, putative
Location	Cp4.1LG18 : 920799 .. 932441 (-)
Sequence length	1403

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCGCCGGTAAATCTTCTCTCGACGTCTGCGTACTCTCTTCCCATTTCCACACCGATCCTCTGGTGTGCTCCGAGCAATTGTCTCCCATCGTTCTGGAGTCCTCTTCAAATTCAATCTAACAATCTGTATTTTCTGAAATTTTTATTAGGATTCTCTTCAAATAACTCTGCGGCATCATGTTCAAAAAGTGAGTTCTCTCTATATTGCTCGTTATTCGGCTATGATTTCATGTCTTTGCTTGATGATTGTGGAAAATGATATCTAGGTTTTGTTTTTCGGGGATTAAAATATGAGGAAATGCTTTGATTTCTTCACTTTTTGTTACTGTTCTCTGGATTTTGCACGATTAGTGTCTTTTCTCTCGTTCTGCTCTGTCGGTTTGTTTGTAGGGTTGATTCTTCTCATAGGAAAAGAGGATTGTTTTGCTTCTGTTTTTCGATTGATTGTTTTGCCCTAGATTTCTACTTGCCGAGAGTTGCTATCGTTGTCGTAATGTGTCATAATGTGCGGAAATAATCATTTGAAACTTCGATATAAGACATAAACTTCATCTTAAAATAATATCATGAGCTTACTTGTTCGAAAACATCGTTAAAACGACACAACGAAACACTAAATGAATTAAATAAACATTAGAATTAGAAAAATAAACATTAGAATTAGAAACATCATATCCTAATCTAAGTCTAAGAAAATAAATGCAACTGTGTCATGGTTTCAAGTTGCGATGTTGTCGTCAGCCGTTGAGGCCTTGCCTTTACCTGAAAAAAGGATTGTTTTGCTTCTATTTTTTCGTTTGATTCTTTTGGACAGCTGTGGATAAATCATTGTTGCTGAATTTGAACATTGAATTGAAATGATAGTTTTGGAGTTGGGATGTTTTCTTGTGGAGTTGAGTGAGTGTGTTGTTTGTACAAATCTTTCAATTGTGTTCTTTTTGCTGTCTTATTGTAGGTTTTCTACTGAGGACGTGTCTGCCCAGAATCAAGTCAAGGCATCGGTGCAACGGAGGATTCGGCAAAGCATAGCTGAAGAAGTAAGTACTGGTTTAACCGTTCGAATCTCGGAATCATATTCATTAGATAAGAACTGATATCTATCTATTGATTTAACCATTCGAATCTCGGAATCATATTCATTAGATAGCAATTGATATCTATGTATTGGTTTAACAGTTCGAATCTCTGAATCATATTCATTAGATAGCAACTGATATCTATCTGTTTTTTGTCTTTTGATTGCAGTATCCTGGACTGGAGCCAGTTTTGGATGATTTGCTTCCTAAAAAAGCTCCTCTGATTGTAACTAAGTGGTTCGAACTTCTGTTTGCTTCTATTTTTGCAGAAAATGATGGATGTTCTTTGTTTTTCTTCGTTCATTTGATCATATGAGGCTTATGTTGGATTTTTGTTTTGAATTATAGTCAAAACCATCTCAATCTGGTTGTTGTGAACAATGTGCCACTCTTTTTCAATATCCGTGATGGGCCCTACATGCCTACATTAAGGTTGCTTCATCAATGTAATGTTCTTCTGATAACCCTTTTAACTTCTGTTGCAATACATATCATTTTTGTAGATCTTTGTTCTTAAACATGTAAGCCCATTGCATTGTTTTATGAAGATGTTTGAAATGAATATTTCCGCACAAGATGTTATGTCGTGCATGTAGTAGTGACTTTAGGTTAGTAGAAAACTAGGGTCGTTACAATATTCTTCTGACAACCCTTGTAACTTTTGTTGCAATACATATCGTAGGTGTTGAGGATTGTTGGGAGGGAGTCCCACATTGACTAATTAAGAGGACAATCCTTGGTTTGTAAGTAAGGAATACATCTCCATTGGTAGGAGGCCGTTTGGGGAAACCAAAAGCAAAACCATGAGAGTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGGTTTGTGGTTCTTAACATGGTATCAGAGTCATGCCTTTTACTTAGTCATGTCAATAGAATCCTAAAATGTCGAACAAAGAAGTTGTGAGCCTCGAATGTGTAGTCAAAAAGTGACTCGAGTGTCGAACAAAGGTGTACTTTGTTCGATGACTCCAGAGAAAGGAGTCGAGCCTCAATTAAGGGGAGGTTGTTCGAGGGCTCTATAGACCTCAAGGGAGGTTCTACGGTGTACTTTGTTTGAGGGGAGGATTGTTGAGGATGGTTGGGAGGGAGTCCCACATTGGCTAATTAAGAGGACGATATGCGTTTATAAGTAAGGAATACATCTCCATTGGTATGAAGCCTTTTGGGGAAACCATAAGCAAAACCATTTGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGGTCCGTGGTTCTTAACATGGTATCATAGCCATGCCCTTTACTTGGTCATGTCTATAGAATTCTCAAATGTCTAACAGAGAAGTTGTGAGCCTTGAATGTGTAGTCAAAAAGTGACTCAAGTGTCGAACAAAGGGTGTGGTGTACTTTTCGAGGGCTCCAAAGAAAGGAGTCGAGCCTCAATTAAGGGGAGGCTGTTCGAGGGCTCTATAGGCCTCAAGCGAGGCTCTATAGTGTACTTTGTTCAAGGGGAGGATTGTTGGGAGGGAGTCCAACATCGGCTAATTAAGAGGACGATCGTGGGTTTATAAGTAAGGAATACATCTTCATTGGTATGAGGCCTTTTGGGGAAACCAAAAGACAAACCATGAGAGCTTATGTGAGATTATTTATGTCCAGATTAGAAGTAGCTTACGATTATATAGGCACAAAATATGTGAGATCCCGCATTAGTTGGAGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAAACGTGTTTTAAAAACCTTGTGGGGAAGCTTGAAAGGGAAAGTCCAAAGAGGACAATATTTGCTAGCGGTGGGCTTGGGCTGTTACAGAATACTTAGATCTCGGTTTGGAAAGGAAATTGGGAATGGGGAAATGGTTCATCTGGTTGTTTATAACTAATTTTTCCATTTCCTACTTGTGGCTTCCCAATGAGCTCATCAAAAGCTCTACTGTAGAATGCTGAGTAAAGCACTTTGTGGTATATTTGCGCTGAAAGGGATTGGAGACGCTTTGGAAACATACCAAGAGAGTTTAATCTTATTCCGTAACAGCCCAAGCCCACCGCTAACAAATATTTTCATCTTTGGGCTTTCCCATTCAGGCTTCCCCTCAAGGTTTTTAAAACGCGTCTGCTAGGGAGAGGTTTCCACACCCTTATAAAGGAATGTTTTGTTCCCCTCTCCAATCGATGTGAGATCTCACAATTCACCCCCCCTTGAGGGTTCAACGTCCTCGCTAGCACATCGCCCGGTGTCTAGCTTTGATATCATTTGTAACAGCCCAACCTCATCACTAGCAAATATTGTTCTCTANAATACATCTTCATTGGTATGAGGCCTTTTGGGGAAACCAAAAGACAAACCATGAGAGCTTATGTGAGATTATTTATGTCCAGATTAGAAGTAGCTTACGATTATATAGGCACAAAATATGTGAGATCCCGCATTAGTTGGAGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAAACGTGTTTTAAAAACCTTGTGGGGAAGCTTGAAAGGGAAAGTCCAAAGAGGACAATATTTGCTAGCGGTGGGCTTGGGCTGTTACAGAATACTTAGATCTCGGTTTGGAAAGGAAATTGGGAATGGGGAAATGGTTCATCTGGTTGTTTATAACTAATTTTTCCATTTCCTACTTGTGGCTTCCCAATGAGCTCATCAAAAGCTCTACTGTAGAATGCTGAGTAAAGCACTTTGTGGTATATTTGCGCTGAAAGGGATTGGAGACGCTTTGGAAACATACCAAGAGAGTTTAATCTTATTCCGTAACAGCCCAAGCCCACCGCTAACAAATATTTTCATCTTTGGGCTTTCCCATTCAGGCTTCCCCTCAAGGTTTTTAAAACGCGTCTGCTAGGGAGAGGTTTCCACACCCTTATAAAGGAATGTTTTGTTCCCCTCTCCAATCGATGTGAGATCTCACAATTCACCCCCCCTTGAGGGTTCAACGTCCTCGCTAGCACATCGCCCGGTGTCTAGCTTTGATATCATTTGTAACAGCCCAACCTCATCACTAGCAAATATTGTTCTCTATGGGTTTTCCCTTTCGGGCTTCTCCTCAAGGTTTTTAAAACGTGTTTGATAGGGAGAAGTTTCCACACCCTTATAAAGAATGTTTTGTTCTCTTCTCCAACCGATGTGATACTCTCGTTTTCATATGAGAGCTCCTTAGATAAGTTGTGTAATTTTTCATTTGGAAGGTATTTTGACCTCTCTTGGTCACAGTTTGGAGATACTTAATGATACTCTAGCCGTGTAAAGGATATTTAGCTAACTTTCTAATTTCTTTGAAATTTACTAATGATGGGTCGGCAAGAAAATGGGAACAACCTTCTTTATTAGTTTAAAGAACGGACTTTGGAGTTGGTCTCAGTGGACGAATTCCAATCGCATCTCCTATCACAACTAGCCAATCTGAGGAAAGAGGGTTTACAACCAACTTTCCATTTAAACATAGTTGTTACACACCCCGTGGGCACCCCACACAACGCCCTAGTACGCACCCATGCTCTAGTATTAGTGGGTTCCGCGGGATGCGTGTTTTATGAAGGACATCTTTGCTTTAACTCCTAATAGGAGAGTGCTTTATCGAGTGGGAGGGCGGGTGGGCTAGTACGAGGTAATTTTTTATTGATTAAGGAACTAAGTGTTGAGAAGGATAGACATAAAGATGTTCTTATTCATGCACGATTTTTCCGAAGTCTCACCTTGTCACCTCATCTCCCCTCGATGAGAGGTTTAGTGTTCACATATCCAACCATAGACTTTTAGAACTAAAGTTTCCATGATTACTCCATAGCCACCTTCCTTCAAACCATACTACTAAAGATAACAAGTACTATAGCATTAGGCCTCCAATCGTGAATACGTACATCAGTAGGGGTACTAAGGGAATTAATTGGAGGACGAAAGGATAATGGTACGTAAAGTTAGTTCGGAGTACGATAGTATGCTTTTGGATTATATTTGGAAGTGTTCATTTTTCTTTTATCTTTATCGTTGGGTAGAACAATAGTGTTCTTGGATAGGGAGAGTAACCAACACCCTCGAATCGATTGGAAGGTTTGCTTCTTTTCTGTATCGTAATCGTTGATTTGTTGTGGTTGTCGCTCTGTTCTTATTGATTTTAGTACAAAAGTTAAAATCTAAGAAGCTCTAAGGAACCCAAGGATGTTCAAAAACCAAAGGTAAAGAGTAATGATGGTCAAAAGACGCATACAATGACATTAGCTGAAAGGACACCGTTCAGTTGTAGGGATCAACTCTACAAGAGACTACCAGATACTGAACTACAAGCGAGGAAAGAAAAAGGGTTGTGTTATTGTTGTGATGAGAAACACTCGATTAGCTTCGGTTAAAAAAAAAAAAAAAGCTCCGACTTCTGGTAACAACAAACGAGATAGAAGATGAAATGGAAGATGTGCATGAGGAGACTTAGATGTTAGAAGTGAGTTCGGCGGTGGAGTTATCGCCAAACTCGGTGGTTGGTCTATCCACACCATGAAACTAAAAGGGTTTATCGAGGATCACGACGTTATAATATTGATAGATTGTGGAGCAACACACGAGTTGGAAAGTTGCCTTCGACGTAATCTACTAGCTACGGTGTTGTTATGGGAACTTGGGAAGCGGTGAAAGGGAAGGGACTCTGTTGAGGAGTTCTCGAGCCTTGTCACTGGAGTTGAGAATCATGGTGAATGTGGATTTGTTTCGTTATCCTCGTGCTCAAAAGCCCGAGATCGAATGCTTGATAGATGAAATGTTAGCTGGTGGAATTATTAGGCCCAATATTAGCCTGGTTTCGAGTCAAGTACAAGGATGATAGTTGAACACGAGTTATAACCAGATAGGAATGGACAAGGAGTCCATTGCTAAGACCGTTTTTCGAACTCATGAAGGCCATTACGAAGTTTTGGTCATGTCATTCGGCCTTACAAATGCCCTTATGAATCAACATTACGACCTCTCCTTCGACCGTTTGTTCTCGTCTTTTTTTATGACATTCTTGTTTATAGTACTGATTTGTTCTCGTCATTATCATTATCCATTCCTCAGTTCCAGATTATGACTTGTACCATTCTATTTGGTTTGCAGATCCTAACATTATGAAAAAATTACAAGTAGACAGAGGTGCCATAAAGTTTGTCCTTGCTGGTGCTAACATAATGTGTCCTGGTCTTACGTCCCCTGGCGGTGCCTTGGACGATGAAGTCGAAGCCGATACACCTGTGGTAAAATATCCGCTCTTATCTATCGACTCGAAATCTCCGTTGTTTATTCCGTTTGTGATTGTTAGTAGGTTTCTTATATAGAATCAAACATTTTTTTTCAGGCAATAATGGCAGAAGGGAAGCAACATGCTCTTGCTATTGGCTTCACAAAGATGTCAGCCAAGCAAATGTGAGTAAACTTGTCAAATAACTGTAACGGGCTTAGATATTGTCCTCTTTAGGCTTTCCCTTAAGATTTTTAAAACGCGTCAGTTAGGGAGAGGTTTCCACGTCGGTTGGGGAGGAGAACGAAGCATTCTTTATAAGGGTGTAGAAACCTCTCCCTAACAGACGCGTTTTAAAAGCCTAAAGAGAACAACATTTGGTAGCGGTGGACTTGGATTGTTACCATAACGGTGACGTGGTGTGGATAAAACTTAAGAAAACTCCTCGTTTGTAATTTACAGAAGGGCGACGAACAAAGGGATTGGCGTGGACAATATGCATTACCTTAACGACGGTCTTTGGAAGGTATATATTAGTTCCCTTCCCTCCCATGTTTCTTCATGCTGCCTAGTGTTGATGTTGAATGTCGAAGCTATATCTTATTTCGGTTGCAGATGGAACGACTCGATTGAGGGTATCTTAAAGAAACAACGTTGGGGGACGGGTGGGGGCGACACGACTTAGAGAACGAACTTTGTTTAATTTCTTCATTCTCTGCACTTTTGAGTTACAAGTCTTAACAGCCTGTTTTGTCTCCATATTTTTAGTATCAGAATTGTACTTAAAATCCCTTTGCATTATTATGTGAATCTGCTCTCCTTGCACTTCTTCACAACATCATTTGGGTTTCTGCTTAATTCTTGAGCGCCTTTATTATTGGTTAAGCTATGCTCAAATTAACGATCTCCACGGGTTGGAGATGGGGAAGGGTTTTCCGTCCCTATTCCTGTCACCTATTTCATGTTTTTTTGGGATGATACCACTTGTCACGATCGCACTTTGATGGTAGCGGACTTGCGATTGTGTGGCACTCACTTTCCAACAACAAGTGAGTTAAGTTTATTCGTTCTTACTTTGTTTACGGCCAAGCGACGTATGCTCGAGCCTCTGGCTTCGGTTCAAGAAGAAAGTTTTAGAAAATGGGGGCAGGGAGATTTTGAAAGAGTTTAAAGCAAGATGTGAGAAAATTGAAATTGGTGTTATATGGGAATGTAAGCAAAAGGCAACAACAACGGCTTACTGCATATAACTATCGGGTAGGGAGATGGGATACATATAATTATTGGGTAGGGAGAAGATCCCATATAATTATCGGGTAGGGAGAAGGGATAATTTTTTCTCGTTTATTAGATAGGGGGATGGGATAATTTTTTCTCGTTTATTAGATAGGGAGATGGGATAATTTTTCCTCGTTTATCGGATAAGGAGATGGGATAATTTTTTTTCGTTTGAGATGGGGAGATTGGATAACTTTTTTTCGTTCGGATAGGGAGATGGGATAATTTTTTTCTCGTTTATCGGGTAGGGAGACGTGATAATTTTTTCTCGTTTATTATTTTTTAAAAGAATAATTATTTTAAAATTTTCATTTTTCAATATAATTTTTATTAAAAATTGTAAAAATAAATTAATATATATTATATATATATATAAAATGATCCGATAATTTCTAAAAAAATCAAAATTTAATATTACAACATAATTCTTTAAAATTTTAAAATATATATTATAGTCTTAAAATTAATAGATTTATTTTTTTAATATAGCAAAAAAAAAAAACATAAATATTAAAAAAAACATAAATAAATAAATAAATAAATATATATATATATATATATATATATATATATATATATATATATATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATATATATATATATATATATATATATATATTAAATGGAGTGGAGATGGAGAATTGAGCGGGGATGGGGAGTATAATCTCATCTCCGACTCCATTTATCTATCGAAAAAAAAAACGTTCTCCACTTCCTCTCCATTAACCCCATTTACCTAATGAAAAAGAATATTCTCCATTTCTTTCCTATTTTCTGTCTAAACGGGAAATTCATCGAACGGAGAATTCACCTGCACCCATTTATCAAGAGTCGTTAACTGCCATGCGGATAAAAAATGTCATAAAAAAGGTTGAGTATATCAAAATATTCAATAAGTAACTCCACTGTCGGAGTTGCAAAAAGCAACCACGTGCGATATGAGTCATAACATACATTCCTAATGAGACTTCAAGGACAGGCCTCGACTCCAATTCTTTTCTACACTTGTTATGCAAGCATCACCTCCGCACGTATAAAACCCACCAAGCTCATACTACTTTCACGCTCCCGAGGCCTCATCGAGTACACAATATGTTCATATGTAAGAGGTATCAATTTCATACACACCGACTCTACATTAGATACTTCAACAATAGGTAGAAACCCTAATATATATAAAAAAATTAAAAAATTAAAAAATTAATTATGAATTATTTATTTATTTATTTATTTTCTTTTTATGGCTAATTTTAAAACGGGCCGTCTTCCTGGCCCGGTCCAGCCCACCATGGACAAGGGGCGATCCAGCACTATAAAAGGAATTTAAAACCCTAGTTTTCACCTTCGTCTTCCTTCAGCACCGGCAGCAGAACGCAGCTCGCAAACTCAGAGAGCTACAATGGTAGCCTCTAAATCTCTTTACTTAATCACTGCCTTCTCTGTTTGAATTTCCACCTTTAATGGCTGATTTGTATTTCTTGTTTGGATTTTACTTGATGCTGTGATTAGGGGATCGATCTCGTCGCAGGAGGTAAGAGCAAGAAGACCAAGAGGACTGCGCCCAAATCTGATGATATCTATCTCAAGTTACTCGTCAAGGTACTTGTTAATTGATATTTCTCGTTCATATGCACTTTTATTTGATCTATTGATTCTTAAATATGCTTGATTGTTGAGTCGCTTAATTGTGTTTTGTTGGATTGTCTTTGAGATGCTTCCATTTAAAATTAACTGAAATGTCAGTCGGTTGGATTTTTGGTTTCTGTAAACGGAGTTTTCCCTCATTATTTGATTCATCTTCTAAGTTTAATTTCGGTCTGTCTGCGTTGCGGTTGTCAAATCCGTTTTAAATTGCTAGCAGTTTATAAATGCCTAATTTTTGTTTTTTTATTTCTATCGAACGAATTGGTTTCGATGACTGATCTATCTGCTTTGATGATATTTGTGAATCCCAGCTCATGATGAGATCTTTTGTAGGTCGGGGAATAGTCTTTTACCCATAATATCTGAGCCTTACGTCCAGTATTAGTGTCATTTTTTATTGAAGTGAATTATTGAAACTTTTTTGGGATTAGGAAATACCCAAACGTAAGTGCACTCTTTTACTGCATTTGCTTTTTTGTTAATACTTTTTTAATACCTAAAATGCTATGTTACCTCTATTACTTGCCCTTTTTGGGTACTGAATATCGACATACCTCGATTTGCATGAGCTATACTTCTTGGATTTTGTTTGATTTTGTTGGAAAAGAATAAAATGTTCCCAGTGATGATTAACTTGACCATGCTAATGCTGATCACTTTGTGATTAATCTTTACTTTAATTGTTCTGAGGGAACTGGCTCCAATATTTCTATATTTTGAGCTCGTTTGCATATCTTGCTCTTAAGTGAGATGGATGGGCATCGTTTTTTATGGTGATTCTGTCGTGGGAGAGGGGAGGGTACTTAATTTACCTTCCATGTATTTTATGCATACTTTTGTTGTTTGTTATTTTACAAAATAAGTACTTGCATGAAGTGTAGTACGTTTTTCTACTTGTGTGTTTTCCTGCAAATACACACATTTCACCTGGCCTGCATTCACTAAACAAATTATTTCTCCTATTTCTTATCAGCTTTACCGCTTCCTTGTTCGTCGGACTGGAAGCAAGTTCAATGCTGTGATTCTCAAGCGCCTGTTTATGAGCAGGGTTAACAAACCTCCACTTTCACTCTCTAGGCTTATCCAGTTCACGAAAGGAAAGGTTGGTTAATCCTGTAGTTTTCTAATTTTATTTCGGTTGTTTTGTAGTGTTTTGCATATTTGAGATATCTGAAACTCTGCACATTTCCTTGTGATGTAATAGGAAAGTAAGATTGCCGTCGTTGTTGGGACTATTACCGATGATATTCGTGTCTATGAAGTTCCAGCATTGAAAGTTGCTGCTCTGAGGTTTACTGAGACAGCAAGGGCAAGGATTGAGAAGGCTGGTGGGGAGTGCTTGACATTCGACCAGCTTGCTTTGAGGGCTCCACTGGGTCAGAACACGGTATGGCACTTTTCATTGATACTTCTGTTAACACTGTTTTTGAATGTGCCGAATCGACTTTTTTTGCGTTCCAAGTAATTTAGTCCATTTGCATTTTAAACTTGGTGCTACACTTTGGGATTAATATATTGTACTGTTTATCCATATATCATGTCTTGTAGACTGTAGATCAAAAAGCTAAAGAGTTTCCAGCAATGGTTTAGTAGTTCTGTAGGGGTTTGAATCATCTCTTGGCTACATTTTTATTCTTTTGCTCTATCTGCAGGTTCTTCTTAGAGGTTCTAAGAACTCCCGGGAGGCTGTGAAGCATTTTGGTCCCGCGCCTGGTGTACCGCACAGCCATAGCAAACCGTATGTGAGGTCGAAGGGTAGGAAGTTTGAGAGGGCAAGAGGAAAGAGAAACAGCAGGGGATACAGGGTTTGATTTGATCTTACGTTGTTTTCAAGCTAATTCAATGCCTATTGTGTGTTATTTTGAACTCAAAATGCAAATTTTGGTAGATTTTAGTTACCTATCAGTTGTTCCATCTCTGCTTACGATTCTGCCATAATACTGTTGATTACGAATCGATCGAATGCTATTCAGCGGGACTTTATAGTCCTTTTGTTAGATTGTGTGATGGCCATTTTGTGTCCGGTTCGTGTTAGATATCTATCTAGAATCCATTTGATTTGATGATGTTCATAAAAACTTGGATCATATTGCATGTCCTGGAAGTTTGTGGATTGATTAGCGATTATTGCAAGTGTAACACTCCTTGGATGTTGTTTGATATGAA

mRNA sequence

TCCGCCGGTAAATCTTCTCTCGACGTCTGCGTACTCTCTTCCCATTTCCACACCGATCCTCTGGATTCTCTTCAAATAACTCTGCGGCATCATGTTCAAAAAGTTTTCTACTGAGGACGTGTCTGCCCAGAATCAAGTCAAGGCATCGGTGCAACGGAGGATTCGGCAAAGCATAGCTGAAGAATATCCTGGACTGGAGCCAGTTTTGGATGATTTGCTTCCTAAAAAAGCTCCTCTGATTGTAACTAAGTGTCAAAACCATCTCAATCTGGTTGTTGTGAACAATGTGCCACTCTTTTTCAATATCCGTGATGGGCCCTACATGCCTACATTAAGGTTGCTTCATCAATATCCTAACATTATGAAAAAATTACAAGTAGACAGAGGTGCCATAAAGTTTGTCCTTGCTGGTGCTAACATAATGTGTCCTGGTCTTACGTCCCCTGGCGGTGCCTTGGACGATGAAGTCGAAGCCGATACACCTGTGGGGATCGATCTCGTCGCAGGAGGTAAGAGCAAGAAGACCAAGAGGACTGCGCCCAAATCTGATGATATCTATCTCAAGTTACTCGTCAAGCTTTACCGCTTCCTTGTTCGTCGGACTGGAAGCAAGTTCAATGCTGTGATTCTCAAGCGCCTGTTTATGAGCAGGGTTAACAAACCTCCACTTTCACTCTCTAGGCTTATCCAGTTCACGAAAGGAAAGGAAAGTAAGATTGCCGTCGTTGTTGGGACTATTACCGATGATATTCGTGTCTATGAAGTTCCAGCATTGAAAGTTGCTGCTCTGAGGTTTACTGAGACAGCAAGGGCAAGGATTGAGAAGGCTGGTGGGGAGTGCTTGACATTCGACCAGCTTGCTTTGAGGGCTCCACTGGGTCAGAACACGGTTCTTCTTAGAGGTTCTAAGAACTCCCGGGAGGCTGTGAAGCATTTTGGTCCCGCGCCTGGTGTACCGCACAGCCATAGCAAACCGTATGTGAGGTCGAAGGGTAGGAAGTTTGAGAGGGCAAGAGGAAAGAGAAACAGCAGGGGATACAGGGTTTGATTTGATCTTACGTTGTTTTCAAGCTAATTCAATGCCTATTGTGTGTTATTTTGAACTCAAAATGCAAATTTTGGTAGATTTTAGTTACCTATCAGTTGTTCCATCTCTGCTTACGATTCTGCCATAATACTGTTGATTACGAATCGATCGAATGCTATTCAGCGGGACTTTATAGTCCTTTTGTTAGATTGTGTGATGGCCATTTTGTGTCCGGTTCGTGTTAGATATCTATCTAGAATCCATTTGATTTGATGATGTTCATAAAAACTTGGATCATATTGCATGTCCTGGAAGTTTGTGGATTGATTAGCGATTATTGCAAGTGTAACACTCCTTGGATGTTGTTTGATATGAA

Coding sequence (CDS)

ATGTTCAAAAAGTTTTCTACTGAGGACGTGTCTGCCCAGAATCAAGTCAAGGCATCGGTGCAACGGAGGATTCGGCAAAGCATAGCTGAAGAATATCCTGGACTGGAGCCAGTTTTGGATGATTTGCTTCCTAAAAAAGCTCCTCTGATTGTAACTAAGTGTCAAAACCATCTCAATCTGGTTGTTGTGAACAATGTGCCACTCTTTTTCAATATCCGTGATGGGCCCTACATGCCTACATTAAGGTTGCTTCATCAATATCCTAACATTATGAAAAAATTACAAGTAGACAGAGGTGCCATAAAGTTTGTCCTTGCTGGTGCTAACATAATGTGTCCTGGTCTTACGTCCCCTGGCGGTGCCTTGGACGATGAAGTCGAAGCCGATACACCTGTGGGGATCGATCTCGTCGCAGGAGGTAAGAGCAAGAAGACCAAGAGGACTGCGCCCAAATCTGATGATATCTATCTCAAGTTACTCGTCAAGCTTTACCGCTTCCTTGTTCGTCGGACTGGAAGCAAGTTCAATGCTGTGATTCTCAAGCGCCTGTTTATGAGCAGGGTTAACAAACCTCCACTTTCACTCTCTAGGCTTATCCAGTTCACGAAAGGAAAGGAAAGTAAGATTGCCGTCGTTGTTGGGACTATTACCGATGATATTCGTGTCTATGAAGTTCCAGCATTGAAAGTTGCTGCTCTGAGGTTTACTGAGACAGCAAGGGCAAGGATTGAGAAGGCTGGTGGGGAGTGCTTGACATTCGACCAGCTTGCTTTGAGGGCTCCACTGGGTCAGAACACGGTTCTTCTTAGAGGTTCTAAGAACTCCCGGGAGGCTGTGAAGCATTTTGGTCCCGCGCCTGGTGTACCGCACAGCCATAGCAAACCGTATGTGAGGTCGAAGGGTAGGAAGTTTGAGAGGGCAAGAGGAAAGAGAAACAGCAGGGGATACAGGGTTTGA

Protein sequence

MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPVGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV

Homology

[Close]

BLAST of Cp4.1LG18g00410.1 vs. Swiss-Prot
Match: RL182_ARATH (60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=1 SV=2)

HSP 1 Score: 321.2 bits (822), Expect = 1.2e-86
Identity = 161/187 (86.10%), Postives = 176/187 (94.12%), Query Frame = 1


Query: 132 VGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKP 191
           +GIDL+AGGKSKKTKRTAPKSDD+YLKL VKLYRFLVRRT SKFN VILKRLFMS+VNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60

Query: 192 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 251
           PLSLSRL++F  GKE KIAV+VGTITDD+RV+E+PA+KV ALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 252 TFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 311
           TFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHSHSKPYVR+KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKR 180

Query: 312 NSRGYRV 319
            SRG++V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of Cp4.1LG18g00410.1 vs. Swiss-Prot
Match: RL183_ARATH (60S ribosomal protein L18-3 OS=Arabidopsis thaliana GN=RPL18C PE=2 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 6.8e-85
Identity = 158/187 (84.49%), Postives = 176/187 (94.12%), Query Frame = 1


Query: 132 VGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKP 191
           +GIDL+AGGKSKKTKRTAPKSDD+YLKLLVKLYRFLVRR+ S FNAVILKRLFMS+VNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA 60

Query: 192 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 251
           PLSLSRL++F  GK+ KIAV+VGTITDD+RV+E+PA+KV ALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 252 TFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 311
           TFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHS++KPYVR KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKR 180

Query: 312 NSRGYRV 319
            SRG++V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of Cp4.1LG18g00410.1 vs. Swiss-Prot
Match: RL18_CICAR (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum GN=RPL18 PE=2 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.9e-79
Identity = 151/184 (82.07%), Postives = 170/184 (92.39%), Query Frame = 1


Query: 135 DLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKPPLS 194
           DL AGGK+KKTKRT+PKS+DIYLKLLVKLYRFLVRRT S FNAVILKRLFMS+VN+PPLS
Sbjct: 1   DLKAGGKNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLS 60

Query: 195 LSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFD 254
           LSRLI++ +GKE KI VVVG +TDDIRVY+VP +KV AL+FTETARARI+KAGGECLTFD
Sbjct: 61  LSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFD 120

Query: 255 QLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRNSR 314
           QLALR PL  +TVLLRG KN+REAVKHFGPAPGVPHSH+KPYVRSKGRKFE+ARG+R SR
Sbjct: 121 QLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRKSR 180

Query: 315 GYRV 319
           G+RV
Sbjct: 181 GFRV 183

[Close]

BLAST of Cp4.1LG18g00410.1 vs. Swiss-Prot
Match: RL181_ARATH (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana GN=RPL18A PE=2 SV=3)

HSP 1 Score: 282.3 bits (721), Expect = 6.4e-75
Identity = 143/188 (76.06%), Postives = 165/188 (87.77%), Query Frame = 1


Query: 132 VGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKP 191
           +GIDL+AGGKSKKTKRT PKSDD+YLKLLVK  R+LVRRT SKFNAVILKRLFMS+VNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTEPKSDDVYLKLLVKANRYLVRRTESKFNAVILKRLFMSKVNKA 60

Query: 192 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 251
           PLSLSRL+++  GK+ KIAV+VGT+TDD+R+ +VPAL V ALRFTE+ARARI KAGGECL
Sbjct: 61  PLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECL 120

Query: 252 TFDQLALRAPL-GQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGK 311
           TFDQLAL  P   +NTVLLRG KN+REAVKHFGPAPGVPHSH+KPYVR  G+K E ARG+
Sbjct: 121 TFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIEIARGR 180

Query: 312 RNSRGYRV 319
           R SRG++V
Sbjct: 181 RRSRGFKV 188

[Close]

BLAST of Cp4.1LG18g00410.1 vs. Swiss-Prot
Match: RL18_TIMBA (60S ribosomal protein L18 OS=Timarcha balearica GN=RpL18 PE=2 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.9e-63
Identity = 119/177 (67.23%), Postives = 150/177 (84.75%), Query Frame = 1


Query: 143 KKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKPPLSLSRLIQFT 202
           +K +RT PKS D+YL+LLVKLYR+L RRTG+KFN +ILKRLFMS++ +PP+SLS++++F 
Sbjct: 11  RKVRRTEPKSQDVYLRLLVKLYRYLARRTGAKFNKIILKRLFMSKIYRPPISLSKVVRFM 70

Query: 203 K--GKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRA 262
           K  G+E   AV+VGT+TDD R++E+P L + ALR T+TARA I KAGGE +TFDQLALR+
Sbjct: 71  KKPGRELLTAVIVGTVTDDSRIFEIPKLSICALRVTQTARAGILKAGGEVITFDQLALRS 130

Query: 263 PLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRNSRGYR 318
           P G  TVLL+G +N+REAVKHFGPAPGVPHSH+KP VRSKGRKFERARG+R S GY+
Sbjct: 131 PTGSKTVLLQGKRNAREAVKHFGPAPGVPHSHAKPLVRSKGRKFERARGRRRSCGYK 187

[Close]

BLAST of Cp4.1LG18g00410.1 vs. TrEMBL
Match: A0A0A0LWD1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569250 PE=4 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 1.6e-93
Identity = 182/187 (97.33%), Postives = 184/187 (98.40%), Query Frame = 1


Query: 132 VGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKP 191
           +GIDLVAGGKSKKTKR APKSDDIYLKLLVKLYRFLVRRTGS FNAVILKRLFMS+VNKP
Sbjct: 58  MGIDLVAGGKSKKTKRVAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 117

Query: 192 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 251
           PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL
Sbjct: 118 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 177

Query: 252 TFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 311
           TFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR
Sbjct: 178 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 237

Query: 312 NSRGYRV 319
           NSRGYRV
Sbjct: 238 NSRGYRV 244

[Close]

BLAST of Cp4.1LG18g00410.1 vs. TrEMBL
Match: A0A067JZH0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13954 PE=4 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 9.9e-91
Identity = 174/187 (93.05%), Postives = 182/187 (97.33%), Query Frame = 1


Query: 132 VGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKP 191
           +GIDL AGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMS++NKP
Sbjct: 1   MGIDLKAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKINKP 60

Query: 192 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 251
           PLSLSRLI FTKGKE KIAVVVGT+TDDIRVYEVPALKV ALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLISFTKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 252 TFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 311
           TFDQLALRAPLGQNTVLLRG KN+REAVKHFGPAPGVPHSH+KPYVRSKGRKFERARG+R
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGRR 180

Query: 312 NSRGYRV 319
           NSRG+RV
Sbjct: 181 NSRGFRV 187

[Close]

BLAST of Cp4.1LG18g00410.1 vs. TrEMBL
Match: A0A0D2TP40_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G301700 PE=4 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 9.9e-91
Identity = 174/187 (93.05%), Postives = 183/187 (97.86%), Query Frame = 1


Query: 132 VGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKP 191
           +GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMS+VNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKVNKP 60

Query: 192 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 251
           PLSLSRLI+F KGKE KIAVVVGT+TDDIRVYEVPALKV ALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLIEFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 252 TFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 311
           TFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHSH+KPYVRSKGRK+ERARG+R
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKYERARGRR 180

Query: 312 NSRGYRV 319
           NS+G+RV
Sbjct: 181 NSKGFRV 187

[Close]

BLAST of Cp4.1LG18g00410.1 vs. TrEMBL
Match: W9QQ74_9ROSA (60S ribosomal protein L18-3 OS=Morus notabilis GN=L484_011109 PE=4 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 9.9e-91
Identity = 174/193 (90.16%), Postives = 185/193 (95.85%), Query Frame = 1


Query: 126 VEADTPVGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFM 185
           V+A +  GIDLVAGGKSKK+KRTAPKSDDIYLKLLVKLYRFLVRRTGS FNAV+LKRLFM
Sbjct: 5   VDASSDDGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFM 64

Query: 186 SRVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEK 245
           S+VNKPPLSLSRLI+F KGKE K+AVVVGT+TDDIRVYEVPALKV ALRFTETARARIEK
Sbjct: 65  SKVNKPPLSLSRLIRFMKGKEDKVAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEK 124

Query: 246 AGGECLTFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFE 305
           AGGECLTFDQLALRAPLGQNTVLLRG KN+REAVKHFGPAPGVPHSH+KPYVRSKGRKFE
Sbjct: 125 AGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE 184

Query: 306 RARGKRNSRGYRV 319
           RARGKRNSRG+RV
Sbjct: 185 RARGKRNSRGFRV 197

[Close]

BLAST of Cp4.1LG18g00410.1 vs. TrEMBL
Match: A0A061F4C5_THECC (Ribosomal protein L18 OS=Theobroma cacao GN=TCM_026682 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 2.9e-90
Identity = 173/187 (92.51%), Postives = 183/187 (97.86%), Query Frame = 1


Query: 132 VGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKP 191
           +GIDLVAGGKSKK+KRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMS+VNKP
Sbjct: 1   MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKVNKP 60

Query: 192 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 251
           PLSLSRLI+F KGKE KIAVVVGT+TDDIRVYEVPALKV ALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLIEFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 252 TFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 311
           TFDQLALRAPLGQNTVLLRG KN+REAVKHFGPAPGVPHSH+KPYVRSKGRKFERARG+R
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGRR 180

Query: 312 NSRGYRV 319
           NS+G+RV
Sbjct: 181 NSKGFRV 187

[Close]

BLAST of Cp4.1LG18g00410.1 vs. TAIR10
Match: AT3G05590.1 (AT3G05590.1 ribosomal protein L18)

HSP 1 Score: 321.2 bits (822), Expect = 7.0e-88
Identity = 161/187 (86.10%), Postives = 176/187 (94.12%), Query Frame = 1


Query: 132 VGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKP 191
           +GIDL+AGGKSKKTKRTAPKSDD+YLKL VKLYRFLVRRT SKFN VILKRLFMS+VNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60

Query: 192 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 251
           PLSLSRL++F  GKE KIAV+VGTITDD+RV+E+PA+KV ALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 252 TFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 311
           TFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHSHSKPYVR+KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKR 180

Query: 312 NSRGYRV 319
            SRG++V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of Cp4.1LG18g00410.1 vs. TAIR10
Match: AT5G27850.1 (AT5G27850.1 Ribosomal protein L18e/L15 superfamily protein)

HSP 1 Score: 315.5 bits (807), Expect = 3.8e-86
Identity = 158/187 (84.49%), Postives = 176/187 (94.12%), Query Frame = 1


Query: 132 VGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKP 191
           +GIDL+AGGKSKKTKRTAPKSDD+YLKLLVKLYRFLVRR+ S FNAVILKRLFMS+VNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA 60

Query: 192 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 251
           PLSLSRL++F  GK+ KIAV+VGTITDD+RV+E+PA+KV ALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 252 TFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 311
           TFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHS++KPYVR KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKR 180

Query: 312 NSRGYRV 319
            SRG++V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of Cp4.1LG18g00410.1 vs. TAIR10
Match: AT1G09150.1 (AT1G09150.1 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein)

HSP 1 Score: 228.8 bits (582), Expect = 4.7e-60
Identity = 111/134 (82.84%), Postives = 120/134 (89.55%), Query Frame = 1


Query: 1   MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNL 60
           MFKKF  E++S+QNQVKASVQRRIRQSI +EYPGLE V++DLLPKK PLIV KC NHL L
Sbjct: 1   MFKKFCLEEISSQNQVKASVQRRIRQSIQDEYPGLESVMEDLLPKKIPLIVVKCPNHLTL 60

Query: 61  VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGG 120
           VVVNNVPLFF IRDGPYMPTLRLLHQYPNIMK+ QVDRGAIKFVL+GANIMCPGLTSPGG
Sbjct: 61  VVVNNVPLFFCIRDGPYMPTLRLLHQYPNIMKRFQVDRGAIKFVLSGANIMCPGLTSPGG 120

Query: 121 ALDDEVEADTPVGI 135
            LD EVEA+ PV I
Sbjct: 121 VLDQEVEAERPVAI 134

[Close]

BLAST of Cp4.1LG18g00410.1 vs. TAIR10
Match: AT2G47570.1 (AT2G47570.1 Ribosomal protein L18e/L15 superfamily protein)

HSP 1 Score: 197.6 bits (501), Expect = 1.2e-50
Identity = 98/135 (72.59%), Postives = 116/135 (85.93%), Query Frame = 1


Query: 185 MSRVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE 244
           MS+VNK PLSLSRL+++  GK+ KIAV+VGT+TDD+R+ +VPAL V ALRFTE+ARARI 
Sbjct: 1   MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 60

Query: 245 KAGGECLTFDQLALRAPL-GQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRK 304
           KAGGECLTFDQLAL  P   +NTVLLRG KN+REAVKHFGPAPGVPHSH+KPYVR  G+K
Sbjct: 61  KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120

Query: 305 FERARGKRNSRGYRV 319
            E ARG+R SRG++V
Sbjct: 121 IEIARGRRRSRGFKV 135

[Close]

BLAST of Cp4.1LG18g00410.1 vs. NCBI nr
Match: gi|778662398|ref|XP_011659839.1| (PREDICTED: 60S ribosomal protein L18-2-like [Cucumis sativus])

HSP 1 Score: 350.9 bits (899), Expect = 2.3e-93
Identity = 182/187 (97.33%), Postives = 184/187 (98.40%), Query Frame = 1


Query: 132 VGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKP 191
           +GIDLVAGGKSKKTKR APKSDDIYLKLLVKLYRFLVRRTGS FNAVILKRLFMS+VNKP
Sbjct: 1   MGIDLVAGGKSKKTKRVAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 192 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 251
           PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 120

Query: 252 TFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 311
           TFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 180

Query: 312 NSRGYRV 319
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of Cp4.1LG18g00410.1 vs. NCBI nr
Match: gi|700210952|gb|KGN66048.1| (hypothetical protein Csa_1G569250 [Cucumis sativus])

HSP 1 Score: 350.9 bits (899), Expect = 2.3e-93
Identity = 182/187 (97.33%), Postives = 184/187 (98.40%), Query Frame = 1


Query: 132 VGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKP 191
           +GIDLVAGGKSKKTKR APKSDDIYLKLLVKLYRFLVRRTGS FNAVILKRLFMS+VNKP
Sbjct: 58  MGIDLVAGGKSKKTKRVAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 117

Query: 192 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 251
           PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL
Sbjct: 118 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 177

Query: 252 TFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 311
           TFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR
Sbjct: 178 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 237

Query: 312 NSRGYRV 319
           NSRGYRV
Sbjct: 238 NSRGYRV 244

[Close]

BLAST of Cp4.1LG18g00410.1 vs. NCBI nr
Match: gi|659099453|ref|XP_008450608.1| (PREDICTED: 60S ribosomal protein L18-2 [Cucumis melo])

HSP 1 Score: 348.6 bits (893), Expect = 1.2e-92
Identity = 181/187 (96.79%), Postives = 183/187 (97.86%), Query Frame = 1


Query: 132 VGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKP 191
           +GIDLVAGGKSKKTKR APKSDDIYLKLLVKLYRFLVRRTGS FNAVILKRLFMS+VNKP
Sbjct: 1   MGIDLVAGGKSKKTKRVAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 192 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 251
           PLSLSRLIQF KGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 120

Query: 252 TFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 311
           TFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 180

Query: 312 NSRGYRV 319
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of Cp4.1LG18g00410.1 vs. NCBI nr
Match: gi|659070222|ref|XP_008454015.1| (PREDICTED: 60S ribosomal protein L18-3 [Cucumis melo])

HSP 1 Score: 342.8 bits (878), Expect = 6.4e-91
Identity = 175/187 (93.58%), Postives = 183/187 (97.86%), Query Frame = 1


Query: 132 VGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKP 191
           +GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGS FNAVILKRLFMS+VNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 192 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 251
           P+SLSRLI++ KGKE+KIAVVVGT+TDDIRVYEVPALKV ALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 252 TFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 311
           TFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHSH+KPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 312 NSRGYRV 319
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of Cp4.1LG18g00410.1 vs. NCBI nr
Match: gi|703068658|ref|XP_010088293.1| (60S ribosomal protein L18-3 [Morus notabilis])

HSP 1 Score: 341.7 bits (875), Expect = 1.4e-90
Identity = 174/193 (90.16%), Postives = 185/193 (95.85%), Query Frame = 1


Query: 126 VEADTPVGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFM 185
           V+A +  GIDLVAGGKSKK+KRTAPKSDDIYLKLLVKLYRFLVRRTGS FNAV+LKRLFM
Sbjct: 5   VDASSDDGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFM 64

Query: 186 SRVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEK 245
           S+VNKPPLSLSRLI+F KGKE K+AVVVGT+TDDIRVYEVPALKV ALRFTETARARIEK
Sbjct: 65  SKVNKPPLSLSRLIRFMKGKEDKVAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEK 124

Query: 246 AGGECLTFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFE 305
           AGGECLTFDQLALRAPLGQNTVLLRG KN+REAVKHFGPAPGVPHSH+KPYVRSKGRKFE
Sbjct: 125 AGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE 184

Query: 306 RARGKRNSRGYRV 319
           RARGKRNSRG+RV
Sbjct: 185 RARGKRNSRGFRV 197

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g00410.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL182_ARATH	1.2e-86	86.10	60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=1 SV=2	[more]
RL183_ARATH	6.8e-85	84.49	60S ribosomal protein L18-3 OS=Arabidopsis thaliana GN=RPL18C PE=2 SV=1	[more]
RL18_CICAR	1.9e-79	82.07	60S ribosomal protein L18 (Fragment) OS=Cicer arietinum GN=RPL18 PE=2 SV=1	[more]
RL181_ARATH	6.4e-75	76.06	Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana GN=RPL18A PE=2 SV=3	[more]
RL18_TIMBA	1.9e-63	67.23	60S ribosomal protein L18 OS=Timarcha balearica GN=RpL18 PE=2 SV=1	[more]

BLAST of Cp4.1LG18g00410.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWD1_CUCSA	1.6e-93	97.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569250 PE=4 SV=1	[more]
A0A067JZH0_JATCU	9.9e-91	93.05	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13954 PE=4 SV=1	[more]
A0A0D2TP40_GOSRA	9.9e-91	93.05	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G301700 PE=4 SV=1	[more]
W9QQ74_9ROSA	9.9e-91	90.16	60S ribosomal protein L18-3 OS=Morus notabilis GN=L484_011109 PE=4 SV=1	[more]
A0A061F4C5_THECC	2.9e-90	92.51	Ribosomal protein L18 OS=Theobroma cacao GN=TCM_026682 PE=4 SV=1	[more]

BLAST of Cp4.1LG18g00410.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05590.1	7.0e-88	86.10	ribosomal protein L18	[more]
AT5G27850.1	3.8e-86	84.49	Ribosomal protein L18e/L15 superfamily protein	[more]
AT1G09150.1	4.7e-60	82.84	pseudouridine synthase and archaeosine transglycosylase (PUA) domain...	[more]
AT2G47570.1	1.2e-50	72.59	Ribosomal protein L18e/L15 superfamily protein	[more]

BLAST of Cp4.1LG18g00410.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778662398\|ref\|XP_011659839.1\|	2.3e-93	97.33	PREDICTED: 60S ribosomal protein L18-2-like [Cucumis sativus]	[more]
gi\|700210952\|gb\|KGN66048.1\|	2.3e-93	97.33	hypothetical protein Csa_1G569250 [Cucumis sativus]	[more]
gi\|659099453\|ref\|XP_008450608.1\|	1.2e-92	96.79	PREDICTED: 60S ribosomal protein L18-2 [Cucumis melo]	[more]
gi\|659070222\|ref\|XP_008454015.1\|	6.4e-91	93.58	PREDICTED: 60S ribosomal protein L18-3 [Cucumis melo]	[more]
gi\|703068658\|ref\|XP_010088293.1\|	1.4e-90	90.16	60S ribosomal protein L18-3 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **INTERPRO**
Term	Definition
IPR021131	Ribosomal_L18e/L15P
IPR015947	PUA-like_sf
IPR004521	Uncharacterised_CHP00451
IPR002478	PUA
IPR000039	Ribosomal_L18e

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG18g00410	Cp4.1LG18g00410	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG18g00410.1	Cp4.1LG18g00410.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG18g00410.1:five_prime_utr:002	Cp4.1LG18g00410.1:five_prime_utr:002	five_prime_UTR
Cp4.1LG18g00410.1:five_prime_utr:001	Cp4.1LG18g00410.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG18g00410.1:cds:009	Cp4.1LG18g00410.1:cds:009	CDS
Cp4.1LG18g00410.1:cds:008	Cp4.1LG18g00410.1:cds:008	CDS
Cp4.1LG18g00410.1:cds:007	Cp4.1LG18g00410.1:cds:007	CDS
Cp4.1LG18g00410.1:cds:006	Cp4.1LG18g00410.1:cds:006	CDS
Cp4.1LG18g00410.1:cds:005	Cp4.1LG18g00410.1:cds:005	CDS
Cp4.1LG18g00410.1:cds:004	Cp4.1LG18g00410.1:cds:004	CDS
Cp4.1LG18g00410.1:cds:003	Cp4.1LG18g00410.1:cds:003	CDS
Cp4.1LG18g00410.1:cds:002	Cp4.1LG18g00410.1:cds:002	CDS
Cp4.1LG18g00410.1:cds:001	Cp4.1LG18g00410.1:cds:001	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG18g00410.1:three_prime_utr:001	Cp4.1LG18g00410.1:three_prime_utr:001	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000039	Ribosomal protein L18e	PANTHER	PTHR10934	60S RIBOSOMAL PROTEIN L18	coord: 133..318 score: 1.3E
IPR002478	PUA domain	PFAM	PF01472	PUA	coord: 93..130 score: 4.
IPR002478	PUA domain	PROFILE	PS50890	PUA	coord: 91..162 score: 9
IPR004521	Uncharacterised domain CHP00451	TIGRFAMs	TIGR00451	TIGR00451	coord: 62..123 score: 4.4
IPR015947	PUA-like domain	GENE3D	G3DSA:2.30.130.10		coord: 90..134 score: 1.7
IPR015947	PUA-like domain	unknown	SSF88697	PUA domain-like	coord: 92..170 score: 5.2
IPR021131	Ribosomal protein L18e/L15P	PFAM	PF17135	Ribosomal_L18	coord: 133..318 score: 4.1
IPR021131	Ribosomal protein L18e/L15P	unknown	SSF52080	Ribosomal proteins L15p and L18e	coord: 151..270 score: 4.32
None	No IPR available	GENE3D	G3DSA:3.100.10.10		coord: 152..270 score: 9.4