Cp4.1LG18g00410 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG18g00410
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	60S ribosomal protein L18, putative
Location	Cp4.1LG18 : 920799 .. 932441 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCGCCGGTAAATCTTCTCTCGACGTCTGCGTACTCTCTTCCCATTTCCACACCGATCCTCTGGTGTGCTCCGAGCAATTGTCTCCCATCGTTCTGGAGTCCTCTTCAAATTCAATCTAACAATCTGTATTTTCTGAAATTTTTATTAGGATTCTCTTCAAATAACTCTGCGGCATCATGTTCAAAAAGTGAGTTCTCTCTATATTGCTCGTTATTCGGCTATGATTTCATGTCTTTGCTTGATGATTGTGGAAAATGATATCTAGGTTTTGTTTTTCGGGGATTAAAATATGAGGAAATGCTTTGATTTCTTCACTTTTTGTTACTGTTCTCTGGATTTTGCACGATTAGTGTCTTTTCTCTCGTTCTGCTCTGTCGGTTTGTTTGTAGGGTTGATTCTTCTCATAGGAAAAGAGGATTGTTTTGCTTCTGTTTTTCGATTGATTGTTTTGCCCTAGATTTCTACTTGCCGAGAGTTGCTATCGTTGTCGTAATGTGTCATAATGTGCGGAAATAATCATTTGAAACTTCGATATAAGACATAAACTTCATCTTAAAATAATATCATGAGCTTACTTGTTCGAAAACATCGTTAAAACGACACAACGAAACACTAAATGAATTAAATAAACATTAGAATTAGAAAAATAAACATTAGAATTAGAAACATCATATCCTAATCTAAGTCTAAGAAAATAAATGCAACTGTGTCATGGTTTCAAGTTGCGATGTTGTCGTCAGCCGTTGAGGCCTTGCCTTTACCTGAAAAAAGGATTGTTTTGCTTCTATTTTTTCGTTTGATTCTTTTGGACAGCTGTGGATAAATCATTGTTGCTGAATTTGAACATTGAATTGAAATGATAGTTTTGGAGTTGGGATGTTTTCTTGTGGAGTTGAGTGAGTGTGTTGTTTGTACAAATCTTTCAATTGTGTTCTTTTTGCTGTCTTATTGTAGGTTTTCTACTGAGGACGTGTCTGCCCAGAATCAAGTCAAGGCATCGGTGCAACGGAGGATTCGGCAAAGCATAGCTGAAGAAGTAAGTACTGGTTTAACCGTTCGAATCTCGGAATCATATTCATTAGATAAGAACTGATATCTATCTATTGATTTAACCATTCGAATCTCGGAATCATATTCATTAGATAGCAATTGATATCTATGTATTGGTTTAACAGTTCGAATCTCTGAATCATATTCATTAGATAGCAACTGATATCTATCTGTTTTTTGTCTTTTGATTGCAGTATCCTGGACTGGAGCCAGTTTTGGATGATTTGCTTCCTAAAAAAGCTCCTCTGATTGTAACTAAGTGGTTCGAACTTCTGTTTGCTTCTATTTTTGCAGAAAATGATGGATGTTCTTTGTTTTTCTTCGTTCATTTGATCATATGAGGCTTATGTTGGATTTTTGTTTTGAATTATAGTCAAAACCATCTCAATCTGGTTGTTGTGAACAATGTGCCACTCTTTTTCAATATCCGTGATGGGCCCTACATGCCTACATTAAGGTTGCTTCATCAATGTAATGTTCTTCTGATAACCCTTTTAACTTCTGTTGCAATACATATCATTTTTGTAGATCTTTGTTCTTAAACATGTAAGCCCATTGCATTGTTTTATGAAGATGTTTGAAATGAATATTTCCGCACAAGATGTTATGTCGTGCATGTAGTAGTGACTTTAGGTTAGTAGAAAACTAGGGTCGTTACAATATTCTTCTGACAACCCTTGTAACTTTTGTTGCAATACATATCGTAGGTGTTGAGGATTGTTGGGAGGGAGTCCCACATTGACTAATTAAGAGGACAATCCTTGGTTTGTAAGTAAGGAATACATCTCCATTGGTAGGAGGCCGTTTGGGGAAACCAAAAGCAAAACCATGAGAGTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGGTTTGTGGTTCTTAACATGGTATCAGAGTCATGCCTTTTACTTAGTCATGTCAATAGAATCCTAAAATGTCGAACAAAGAAGTTGTGAGCCTCGAATGTGTAGTCAAAAAGTGACTCGAGTGTCGAACAAAGGTGTACTTTGTTCGATGACTCCAGAGAAAGGAGTCGAGCCTCAATTAAGGGGAGGTTGTTCGAGGGCTCTATAGACCTCAAGGGAGGTTCTACGGTGTACTTTGTTTGAGGGGAGGATTGTTGAGGATGGTTGGGAGGGAGTCCCACATTGGCTAATTAAGAGGACGATATGCGTTTATAAGTAAGGAATACATCTCCATTGGTATGAAGCCTTTTGGGGAAACCATAAGCAAAACCATTTGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGGTCCGTGGTTCTTAACATGGTATCATAGCCATGCCCTTTACTTGGTCATGTCTATAGAATTCTCAAATGTCTAACAGAGAAGTTGTGAGCCTTGAATGTGTAGTCAAAAAGTGACTCAAGTGTCGAACAAAGGGTGTGGTGTACTTTTCGAGGGCTCCAAAGAAAGGAGTCGAGCCTCAATTAAGGGGAGGCTGTTCGAGGGCTCTATAGGCCTCAAGCGAGGCTCTATAGTGTACTTTGTTCAAGGGGAGGATTGTTGGGAGGGAGTCCAACATCGGCTAATTAAGAGGACGATCGTGGGTTTATAAGTAAGGAATACATCTTCATTGGTATGAGGCCTTTTGGGGAAACCAAAAGACAAACCATGAGAGCTTATGTGAGATTATTTATGTCCAGATTAGAAGTAGCTTACGATTATATAGGCACAAAATATGTGAGATCCCGCATTAGTTGGAGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAAACGTGTTTTAAAAACCTTGTGGGGAAGCTTGAAAGGGAAAGTCCAAAGAGGACAATATTTGCTAGCGGTGGGCTTGGGCTGTTACAGAATACTTAGATCTCGGTTTGGAAAGGAAATTGGGAATGGGGAAATGGTTCATCTGGTTGTTTATAACTAATTTTTCCATTTCCTACTTGTGGCTTCCCAATGAGCTCATCAAAAGCTCTACTGTAGAATGCTGAGTAAAGCACTTTGTGGTATATTTGCGCTGAAAGGGATTGGAGACGCTTTGGAAACATACCAAGAGAGTTTAATCTTATTCCGTAACAGCCCAAGCCCACCGCTAACAAATATTTTCATCTTTGGGCTTTCCCATTCAGGCTTCCCCTCAAGGTTTTTAAAACGCGTCTGCTAGGGAGAGGTTTCCACACCCTTATAAAGGAATGTTTTGTTCCCCTCTCCAATCGATGTGAGATCTCACAATTCACCCCCCCTTGAGGGTTCAACGTCCTCGCTAGCACATCGCCCGGTGTCTAGCTTTGATATCATTTGTAACAGCCCAACCTCATCACTAGCAAATATTGTTCTCTANAATACATCTTCATTGGTATGAGGCCTTTTGGGGAAACCAAAAGACAAACCATGAGAGCTTATGTGAGATTATTTATGTCCAGATTAGAAGTAGCTTACGATTATATAGGCACAAAATATGTGAGATCCCGCATTAGTTGGAGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAAACGTGTTTTAAAAACCTTGTGGGGAAGCTTGAAAGGGAAAGTCCAAAGAGGACAATATTTGCTAGCGGTGGGCTTGGGCTGTTACAGAATACTTAGATCTCGGTTTGGAAAGGAAATTGGGAATGGGGAAATGGTTCATCTGGTTGTTTATAACTAATTTTTCCATTTCCTACTTGTGGCTTCCCAATGAGCTCATCAAAAGCTCTACTGTAGAATGCTGAGTAAAGCACTTTGTGGTATATTTGCGCTGAAAGGGATTGGAGACGCTTTGGAAACATACCAAGAGAGTTTAATCTTATTCCGTAACAGCCCAAGCCCACCGCTAACAAATATTTTCATCTTTGGGCTTTCCCATTCAGGCTTCCCCTCAAGGTTTTTAAAACGCGTCTGCTAGGGAGAGGTTTCCACACCCTTATAAAGGAATGTTTTGTTCCCCTCTCCAATCGATGTGAGATCTCACAATTCACCCCCCCTTGAGGGTTCAACGTCCTCGCTAGCACATCGCCCGGTGTCTAGCTTTGATATCATTTGTAACAGCCCAACCTCATCACTAGCAAATATTGTTCTCTATGGGTTTTCCCTTTCGGGCTTCTCCTCAAGGTTTTTAAAACGTGTTTGATAGGGAGAAGTTTCCACACCCTTATAAAGAATGTTTTGTTCTCTTCTCCAACCGATGTGATACTCTCGTTTTCATATGAGAGCTCCTTAGATAAGTTGTGTAATTTTTCATTTGGAAGGTATTTTGACCTCTCTTGGTCACAGTTTGGAGATACTTAATGATACTCTAGCCGTGTAAAGGATATTTAGCTAACTTTCTAATTTCTTTGAAATTTACTAATGATGGGTCGGCAAGAAAATGGGAACAACCTTCTTTATTAGTTTAAAGAACGGACTTTGGAGTTGGTCTCAGTGGACGAATTCCAATCGCATCTCCTATCACAACTAGCCAATCTGAGGAAAGAGGGTTTACAACCAACTTTCCATTTAAACATAGTTGTTACACACCCCGTGGGCACCCCACACAACGCCCTAGTACGCACCCATGCTCTAGTATTAGTGGGTTCCGCGGGATGCGTGTTTTATGAAGGACATCTTTGCTTTAACTCCTAATAGGAGAGTGCTTTATCGAGTGGGAGGGCGGGTGGGCTAGTACGAGGTAATTTTTTATTGATTAAGGAACTAAGTGTTGAGAAGGATAGACATAAAGATGTTCTTATTCATGCACGATTTTTCCGAAGTCTCACCTTGTCACCTCATCTCCCCTCGATGAGAGGTTTAGTGTTCACATATCCAACCATAGACTTTTAGAACTAAAGTTTCCATGATTACTCCATAGCCACCTTCCTTCAAACCATACTACTAAAGATAACAAGTACTATAGCATTAGGCCTCCAATCGTGAATACGTACATCAGTAGGGGTACTAAGGGAATTAATTGGAGGACGAAAGGATAATGGTACGTAAAGTTAGTTCGGAGTACGATAGTATGCTTTTGGATTATATTTGGAAGTGTTCATTTTTCTTTTATCTTTATCGTTGGGTAGAACAATAGTGTTCTTGGATAGGGAGAGTAACCAACACCCTCGAATCGATTGGAAGGTTTGCTTCTTTTCTGTATCGTAATCGTTGATTTGTTGTGGTTGTCGCTCTGTTCTTATTGATTTTAGTACAAAAGTTAAAATCTAAGAAGCTCTAAGGAACCCAAGGATGTTCAAAAACCAAAGGTAAAGAGTAATGATGGTCAAAAGACGCATACAATGACATTAGCTGAAAGGACACCGTTCAGTTGTAGGGATCAACTCTACAAGAGACTACCAGATACTGAACTACAAGCGAGGAAAGAAAAAGGGTTGTGTTATTGTTGTGATGAGAAACACTCGATTAGCTTCGGTTAAAAAAAAAAAAAAAGCTCCGACTTCTGGTAACAACAAACGAGATAGAAGATGAAATGGAAGATGTGCATGAGGAGACTTAGATGTTAGAAGTGAGTTCGGCGGTGGAGTTATCGCCAAACTCGGTGGTTGGTCTATCCACACCATGAAACTAAAAGGGTTTATCGAGGATCACGACGTTATAATATTGATAGATTGTGGAGCAACACACGAGTTGGAAAGTTGCCTTCGACGTAATCTACTAGCTACGGTGTTGTTATGGGAACTTGGGAAGCGGTGAAAGGGAAGGGACTCTGTTGAGGAGTTCTCGAGCCTTGTCACTGGAGTTGAGAATCATGGTGAATGTGGATTTGTTTCGTTATCCTCGTGCTCAAAAGCCCGAGATCGAATGCTTGATAGATGAAATGTTAGCTGGTGGAATTATTAGGCCCAATATTAGCCTGGTTTCGAGTCAAGTACAAGGATGATAGTTGAACACGAGTTATAACCAGATAGGAATGGACAAGGAGTCCATTGCTAAGACCGTTTTTCGAACTCATGAAGGCCATTACGAAGTTTTGGTCATGTCATTCGGCCTTACAAATGCCCTTATGAATCAACATTACGACCTCTCCTTCGACCGTTTGTTCTCGTCTTTTTTTATGACATTCTTGTTTATAGTACTGATTTGTTCTCGTCATTATCATTATCCATTCCTCAGTTCCAGATTATGACTTGTACCATTCTATTTGGTTTGCAGATCCTAACATTATGAAAAAATTACAAGTAGACAGAGGTGCCATAAAGTTTGTCCTTGCTGGTGCTAACATAATGTGTCCTGGTCTTACGTCCCCTGGCGGTGCCTTGGACGATGAAGTCGAAGCCGATACACCTGTGGTAAAATATCCGCTCTTATCTATCGACTCGAAATCTCCGTTGTTTATTCCGTTTGTGATTGTTAGTAGGTTTCTTATATAGAATCAAACATTTTTTTTCAGGCAATAATGGCAGAAGGGAAGCAACATGCTCTTGCTATTGGCTTCACAAAGATGTCAGCCAAGCAAATGTGAGTAAACTTGTCAAATAACTGTAACGGGCTTAGATATTGTCCTCTTTAGGCTTTCCCTTAAGATTTTTAAAACGCGTCAGTTAGGGAGAGGTTTCCACGTCGGTTGGGGAGGAGAACGAAGCATTCTTTATAAGGGTGTAGAAACCTCTCCCTAACAGACGCGTTTTAAAAGCCTAAAGAGAACAACATTTGGTAGCGGTGGACTTGGATTGTTACCATAACGGTGACGTGGTGTGGATAAAACTTAAGAAAACTCCTCGTTTGTAATTTACAGAAGGGCGACGAACAAAGGGATTGGCGTGGACAATATGCATTACCTTAACGACGGTCTTTGGAAGGTATATATTAGTTCCCTTCCCTCCCATGTTTCTTCATGCTGCCTAGTGTTGATGTTGAATGTCGAAGCTATATCTTATTTCGGTTGCAGATGGAACGACTCGATTGAGGGTATCTTAAAGAAACAACGTTGGGGGACGGGTGGGGGCGACACGACTTAGAGAACGAACTTTGTTTAATTTCTTCATTCTCTGCACTTTTGAGTTACAAGTCTTAACAGCCTGTTTTGTCTCCATATTTTTAGTATCAGAATTGTACTTAAAATCCCTTTGCATTATTATGTGAATCTGCTCTCCTTGCACTTCTTCACAACATCATTTGGGTTTCTGCTTAATTCTTGAGCGCCTTTATTATTGGTTAAGCTATGCTCAAATTAACGATCTCCACGGGTTGGAGATGGGGAAGGGTTTTCCGTCCCTATTCCTGTCACCTATTTCATGTTTTTTTGGGATGATACCACTTGTCACGATCGCACTTTGATGGTAGCGGACTTGCGATTGTGTGGCACTCACTTTCCAACAACAAGTGAGTTAAGTTTATTCGTTCTTACTTTGTTTACGGCCAAGCGACGTATGCTCGAGCCTCTGGCTTCGGTTCAAGAAGAAAGTTTTAGAAAATGGGGGCAGGGAGATTTTGAAAGAGTTTAAAGCAAGATGTGAGAAAATTGAAATTGGTGTTATATGGGAATGTAAGCAAAAGGCAACAACAACGGCTTACTGCATATAACTATCGGGTAGGGAGATGGGATACATATAATTATTGGGTAGGGAGAAGATCCCATATAATTATCGGGTAGGGAGAAGGGATAATTTTTTCTCGTTTATTAGATAGGGGGATGGGATAATTTTTTCTCGTTTATTAGATAGGGAGATGGGATAATTTTTCCTCGTTTATCGGATAAGGAGATGGGATAATTTTTTTTCGTTTGAGATGGGGAGATTGGATAACTTTTTTTCGTTCGGATAGGGAGATGGGATAATTTTTTTCTCGTTTATCGGGTAGGGAGACGTGATAATTTTTTCTCGTTTATTATTTTTTAAAAGAATAATTATTTTAAAATTTTCATTTTTCAATATAATTTTTATTAAAAATTGTAAAAATAAATTAATATATATTATATATATATATAAAATGATCCGATAATTTCTAAAAAAATCAAAATTTAATATTACAACATAATTCTTTAAAATTTTAAAATATATATTATAGTCTTAAAATTAATAGATTTATTTTTTTAATATAGCAAAAAAAAAAAACATAAATATTAAAAAAAACATAAATAAATAAATAAATAAATATATATATATATATATATATATATATATATATATATATATATATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATATATATATATATATATATATATATATATTAAATGGAGTGGAGATGGAGAATTGAGCGGGGATGGGGAGTATAATCTCATCTCCGACTCCATTTATCTATCGAAAAAAAAAACGTTCTCCACTTCCTCTCCATTAACCCCATTTACCTAATGAAAAAGAATATTCTCCATTTCTTTCCTATTTTCTGTCTAAACGGGAAATTCATCGAACGGAGAATTCACCTGCACCCATTTATCAAGAGTCGTTAACTGCCATGCGGATAAAAAATGTCATAAAAAAGGTTGAGTATATCAAAATATTCAATAAGTAACTCCACTGTCGGAGTTGCAAAAAGCAACCACGTGCGATATGAGTCATAACATACATTCCTAATGAGACTTCAAGGACAGGCCTCGACTCCAATTCTTTTCTACACTTGTTATGCAAGCATCACCTCCGCACGTATAAAACCCACCAAGCTCATACTACTTTCACGCTCCCGAGGCCTCATCGAGTACACAATATGTTCATATGTAAGAGGTATCAATTTCATACACACCGACTCTACATTAGATACTTCAACAATAGGTAGAAACCCTAATATATATAAAAAAATTAAAAAATTAAAAAATTAATTATGAATTATTTATTTATTTATTTATTTTCTTTTTATGGCTAATTTTAAAACGGGCCGTCTTCCTGGCCCGGTCCAGCCCACCATGGACAAGGGGCGATCCAGCACTATAAAAGGAATTTAAAACCCTAGTTTTCACCTTCGTCTTCCTTCAGCACCGGCAGCAGAACGCAGCTCGCAAACTCAGAGAGCTACAATGGTAGCCTCTAAATCTCTTTACTTAATCACTGCCTTCTCTGTTTGAATTTCCACCTTTAATGGCTGATTTGTATTTCTTGTTTGGATTTTACTTGATGCTGTGATTAGGGGATCGATCTCGTCGCAGGAGGTAAGAGCAAGAAGACCAAGAGGACTGCGCCCAAATCTGATGATATCTATCTCAAGTTACTCGTCAAGGTACTTGTTAATTGATATTTCTCGTTCATATGCACTTTTATTTGATCTATTGATTCTTAAATATGCTTGATTGTTGAGTCGCTTAATTGTGTTTTGTTGGATTGTCTTTGAGATGCTTCCATTTAAAATTAACTGAAATGTCAGTCGGTTGGATTTTTGGTTTCTGTAAACGGAGTTTTCCCTCATTATTTGATTCATCTTCTAAGTTTAATTTCGGTCTGTCTGCGTTGCGGTTGTCAAATCCGTTTTAAATTGCTAGCAGTTTATAAATGCCTAATTTTTGTTTTTTTATTTCTATCGAACGAATTGGTTTCGATGACTGATCTATCTGCTTTGATGATATTTGTGAATCCCAGCTCATGATGAGATCTTTTGTAGGTCGGGGAATAGTCTTTTACCCATAATATCTGAGCCTTACGTCCAGTATTAGTGTCATTTTTTATTGAAGTGAATTATTGAAACTTTTTTGGGATTAGGAAATACCCAAACGTAAGTGCACTCTTTTACTGCATTTGCTTTTTTGTTAATACTTTTTTAATACCTAAAATGCTATGTTACCTCTATTACTTGCCCTTTTTGGGTACTGAATATCGACATACCTCGATTTGCATGAGCTATACTTCTTGGATTTTGTTTGATTTTGTTGGAAAAGAATAAAATGTTCCCAGTGATGATTAACTTGACCATGCTAATGCTGATCACTTTGTGATTAATCTTTACTTTAATTGTTCTGAGGGAACTGGCTCCAATATTTCTATATTTTGAGCTCGTTTGCATATCTTGCTCTTAAGTGAGATGGATGGGCATCGTTTTTTATGGTGATTCTGTCGTGGGAGAGGGGAGGGTACTTAATTTACCTTCCATGTATTTTATGCATACTTTTGTTGTTTGTTATTTTACAAAATAAGTACTTGCATGAAGTGTAGTACGTTTTTCTACTTGTGTGTTTTCCTGCAAATACACACATTTCACCTGGCCTGCATTCACTAAACAAATTATTTCTCCTATTTCTTATCAGCTTTACCGCTTCCTTGTTCGTCGGACTGGAAGCAAGTTCAATGCTGTGATTCTCAAGCGCCTGTTTATGAGCAGGGTTAACAAACCTCCACTTTCACTCTCTAGGCTTATCCAGTTCACGAAAGGAAAGGTTGGTTAATCCTGTAGTTTTCTAATTTTATTTCGGTTGTTTTGTAGTGTTTTGCATATTTGAGATATCTGAAACTCTGCACATTTCCTTGTGATGTAATAGGAAAGTAAGATTGCCGTCGTTGTTGGGACTATTACCGATGATATTCGTGTCTATGAAGTTCCAGCATTGAAAGTTGCTGCTCTGAGGTTTACTGAGACAGCAAGGGCAAGGATTGAGAAGGCTGGTGGGGAGTGCTTGACATTCGACCAGCTTGCTTTGAGGGCTCCACTGGGTCAGAACACGGTATGGCACTTTTCATTGATACTTCTGTTAACACTGTTTTTGAATGTGCCGAATCGACTTTTTTTGCGTTCCAAGTAATTTAGTCCATTTGCATTTTAAACTTGGTGCTACACTTTGGGATTAATATATTGTACTGTTTATCCATATATCATGTCTTGTAGACTGTAGATCAAAAAGCTAAAGAGTTTCCAGCAATGGTTTAGTAGTTCTGTAGGGGTTTGAATCATCTCTTGGCTACATTTTTATTCTTTTGCTCTATCTGCAGGTTCTTCTTAGAGGTTCTAAGAACTCCCGGGAGGCTGTGAAGCATTTTGGTCCCGCGCCTGGTGTACCGCACAGCCATAGCAAACCGTATGTGAGGTCGAAGGGTAGGAAGTTTGAGAGGGCAAGAGGAAAGAGAAACAGCAGGGGATACAGGGTTTGATTTGATCTTACGTTGTTTTCAAGCTAATTCAATGCCTATTGTGTGTTATTTTGAACTCAAAATGCAAATTTTGGTAGATTTTAGTTACCTATCAGTTGTTCCATCTCTGCTTACGATTCTGCCATAATACTGTTGATTACGAATCGATCGAATGCTATTCAGCGGGACTTTATAGTCCTTTTGTTAGATTGTGTGATGGCCATTTTGTGTCCGGTTCGTGTTAGATATCTATCTAGAATCCATTTGATTTGATGATGTTCATAAAAACTTGGATCATATTGCATGTCCTGGAAGTTTGTGGATTGATTAGCGATTATTGCAAGTGTAACACTCCTTGGATGTTGTTTGATATGAA

mRNA sequence

TCCGCCGGTAAATCTTCTCTCGACGTCTGCGTACTCTCTTCCCATTTCCACACCGATCCTCTGGATTCTCTTCAAATAACTCTGCGGCATCATGTTCAAAAAGTTTTCTACTGAGGACGTGTCTGCCCAGAATCAAGTCAAGGCATCGGTGCAACGGAGGATTCGGCAAAGCATAGCTGAAGAATATCCTGGACTGGAGCCAGTTTTGGATGATTTGCTTCCTAAAAAAGCTCCTCTGATTGTAACTAAGTGTCAAAACCATCTCAATCTGGTTGTTGTGAACAATGTGCCACTCTTTTTCAATATCCGTGATGGGCCCTACATGCCTACATTAAGGTTGCTTCATCAATATCCTAACATTATGAAAAAATTACAAGTAGACAGAGGTGCCATAAAGTTTGTCCTTGCTGGTGCTAACATAATGTGTCCTGGTCTTACGTCCCCTGGCGGTGCCTTGGACGATGAAGTCGAAGCCGATACACCTGTGGGGATCGATCTCGTCGCAGGAGGTAAGAGCAAGAAGACCAAGAGGACTGCGCCCAAATCTGATGATATCTATCTCAAGTTACTCGTCAAGCTTTACCGCTTCCTTGTTCGTCGGACTGGAAGCAAGTTCAATGCTGTGATTCTCAAGCGCCTGTTTATGAGCAGGGTTAACAAACCTCCACTTTCACTCTCTAGGCTTATCCAGTTCACGAAAGGAAAGGAAAGTAAGATTGCCGTCGTTGTTGGGACTATTACCGATGATATTCGTGTCTATGAAGTTCCAGCATTGAAAGTTGCTGCTCTGAGGTTTACTGAGACAGCAAGGGCAAGGATTGAGAAGGCTGGTGGGGAGTGCTTGACATTCGACCAGCTTGCTTTGAGGGCTCCACTGGGTCAGAACACGGTTCTTCTTAGAGGTTCTAAGAACTCCCGGGAGGCTGTGAAGCATTTTGGTCCCGCGCCTGGTGTACCGCACAGCCATAGCAAACCGTATGTGAGGTCGAAGGGTAGGAAGTTTGAGAGGGCAAGAGGAAAGAGAAACAGCAGGGGATACAGGGTTTGATTTGATCTTACGTTGTTTTCAAGCTAATTCAATGCCTATTGTGTGTTATTTTGAACTCAAAATGCAAATTTTGGTAGATTTTAGTTACCTATCAGTTGTTCCATCTCTGCTTACGATTCTGCCATAATACTGTTGATTACGAATCGATCGAATGCTATTCAGCGGGACTTTATAGTCCTTTTGTTAGATTGTGTGATGGCCATTTTGTGTCCGGTTCGTGTTAGATATCTATCTAGAATCCATTTGATTTGATGATGTTCATAAAAACTTGGATCATATTGCATGTCCTGGAAGTTTGTGGATTGATTAGCGATTATTGCAAGTGTAACACTCCTTGGATGTTGTTTGATATGAA

Coding sequence (CDS)

ATGTTCAAAAAGTTTTCTACTGAGGACGTGTCTGCCCAGAATCAAGTCAAGGCATCGGTGCAACGGAGGATTCGGCAAAGCATAGCTGAAGAATATCCTGGACTGGAGCCAGTTTTGGATGATTTGCTTCCTAAAAAAGCTCCTCTGATTGTAACTAAGTGTCAAAACCATCTCAATCTGGTTGTTGTGAACAATGTGCCACTCTTTTTCAATATCCGTGATGGGCCCTACATGCCTACATTAAGGTTGCTTCATCAATATCCTAACATTATGAAAAAATTACAAGTAGACAGAGGTGCCATAAAGTTTGTCCTTGCTGGTGCTAACATAATGTGTCCTGGTCTTACGTCCCCTGGCGGTGCCTTGGACGATGAAGTCGAAGCCGATACACCTGTGGGGATCGATCTCGTCGCAGGAGGTAAGAGCAAGAAGACCAAGAGGACTGCGCCCAAATCTGATGATATCTATCTCAAGTTACTCGTCAAGCTTTACCGCTTCCTTGTTCGTCGGACTGGAAGCAAGTTCAATGCTGTGATTCTCAAGCGCCTGTTTATGAGCAGGGTTAACAAACCTCCACTTTCACTCTCTAGGCTTATCCAGTTCACGAAAGGAAAGGAAAGTAAGATTGCCGTCGTTGTTGGGACTATTACCGATGATATTCGTGTCTATGAAGTTCCAGCATTGAAAGTTGCTGCTCTGAGGTTTACTGAGACAGCAAGGGCAAGGATTGAGAAGGCTGGTGGGGAGTGCTTGACATTCGACCAGCTTGCTTTGAGGGCTCCACTGGGTCAGAACACGGTTCTTCTTAGAGGTTCTAAGAACTCCCGGGAGGCTGTGAAGCATTTTGGTCCCGCGCCTGGTGTACCGCACAGCCATAGCAAACCGTATGTGAGGTCGAAGGGTAGGAAGTTTGAGAGGGCAAGAGGAAAGAGAAACAGCAGGGGATACAGGGTTTGA

Protein sequence

MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEADTPVGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV

Homology

[Close]

BLAST of Cp4.1LG18g00410 vs. Swiss-Prot
Match: RL182_ARATH (60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=1 SV=2)

HSP 1 Score: 321.2 bits (822), Expect = 1.2e-86
Identity = 161/187 (86.10%), Postives = 176/187 (94.12%), Query Frame = 1


Query: 132 VGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKP 191
           +GIDL+AGGKSKKTKRTAPKSDD+YLKL VKLYRFLVRRT SKFN VILKRLFMS+VNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60

Query: 192 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 251
           PLSLSRL++F  GKE KIAV+VGTITDD+RV+E+PA+KV ALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 252 TFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 311
           TFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHSHSKPYVR+KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKR 180

Query: 312 NSRGYRV 319
            SRG++V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of Cp4.1LG18g00410 vs. Swiss-Prot
Match: RL183_ARATH (60S ribosomal protein L18-3 OS=Arabidopsis thaliana GN=RPL18C PE=2 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 6.8e-85
Identity = 158/187 (84.49%), Postives = 176/187 (94.12%), Query Frame = 1


Query: 132 VGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKP 191
           +GIDL+AGGKSKKTKRTAPKSDD+YLKLLVKLYRFLVRR+ S FNAVILKRLFMS+VNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA 60

Query: 192 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 251
           PLSLSRL++F  GK+ KIAV+VGTITDD+RV+E+PA+KV ALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 252 TFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 311
           TFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHS++KPYVR KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKR 180

Query: 312 NSRGYRV 319
            SRG++V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of Cp4.1LG18g00410 vs. Swiss-Prot
Match: RL18_CICAR (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum GN=RPL18 PE=2 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.9e-79
Identity = 151/184 (82.07%), Postives = 170/184 (92.39%), Query Frame = 1


Query: 135 DLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKPPLS 194
           DL AGGK+KKTKRT+PKS+DIYLKLLVKLYRFLVRRT S FNAVILKRLFMS+VN+PPLS
Sbjct: 1   DLKAGGKNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLS 60

Query: 195 LSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFD 254
           LSRLI++ +GKE KI VVVG +TDDIRVY+VP +KV AL+FTETARARI+KAGGECLTFD
Sbjct: 61  LSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFD 120

Query: 255 QLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRNSR 314
           QLALR PL  +TVLLRG KN+REAVKHFGPAPGVPHSH+KPYVRSKGRKFE+ARG+R SR
Sbjct: 121 QLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRKSR 180

Query: 315 GYRV 319
           G+RV
Sbjct: 181 GFRV 183

[Close]

BLAST of Cp4.1LG18g00410 vs. Swiss-Prot
Match: RL181_ARATH (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana GN=RPL18A PE=2 SV=3)

HSP 1 Score: 282.3 bits (721), Expect = 6.4e-75
Identity = 143/188 (76.06%), Postives = 165/188 (87.77%), Query Frame = 1


Query: 132 VGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKP 191
           +GIDL+AGGKSKKTKRT PKSDD+YLKLLVK  R+LVRRT SKFNAVILKRLFMS+VNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTEPKSDDVYLKLLVKANRYLVRRTESKFNAVILKRLFMSKVNKA 60

Query: 192 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 251
           PLSLSRL+++  GK+ KIAV+VGT+TDD+R+ +VPAL V ALRFTE+ARARI KAGGECL
Sbjct: 61  PLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECL 120

Query: 252 TFDQLALRAPL-GQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGK 311
           TFDQLAL  P   +NTVLLRG KN+REAVKHFGPAPGVPHSH+KPYVR  G+K E ARG+
Sbjct: 121 TFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIEIARGR 180

Query: 312 RNSRGYRV 319
           R SRG++V
Sbjct: 181 RRSRGFKV 188

[Close]

BLAST of Cp4.1LG18g00410 vs. Swiss-Prot
Match: RL18_TIMBA (60S ribosomal protein L18 OS=Timarcha balearica GN=RpL18 PE=2 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.9e-63
Identity = 119/177 (67.23%), Postives = 150/177 (84.75%), Query Frame = 1


Query: 143 KKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKPPLSLSRLIQFT 202
           +K +RT PKS D+YL+LLVKLYR+L RRTG+KFN +ILKRLFMS++ +PP+SLS++++F 
Sbjct: 11  RKVRRTEPKSQDVYLRLLVKLYRYLARRTGAKFNKIILKRLFMSKIYRPPISLSKVVRFM 70

Query: 203 K--GKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRA 262
           K  G+E   AV+VGT+TDD R++E+P L + ALR T+TARA I KAGGE +TFDQLALR+
Sbjct: 71  KKPGRELLTAVIVGTVTDDSRIFEIPKLSICALRVTQTARAGILKAGGEVITFDQLALRS 130

Query: 263 PLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRNSRGYR 318
           P G  TVLL+G +N+REAVKHFGPAPGVPHSH+KP VRSKGRKFERARG+R S GY+
Sbjct: 131 PTGSKTVLLQGKRNAREAVKHFGPAPGVPHSHAKPLVRSKGRKFERARGRRRSCGYK 187

[Close]

BLAST of Cp4.1LG18g00410 vs. TrEMBL
Match: A0A0A0LWD1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569250 PE=4 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 1.6e-93
Identity = 182/187 (97.33%), Postives = 184/187 (98.40%), Query Frame = 1


Query: 132 VGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKP 191
           +GIDLVAGGKSKKTKR APKSDDIYLKLLVKLYRFLVRRTGS FNAVILKRLFMS+VNKP
Sbjct: 58  MGIDLVAGGKSKKTKRVAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 117

Query: 192 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 251
           PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL
Sbjct: 118 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 177

Query: 252 TFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 311
           TFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR
Sbjct: 178 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 237

Query: 312 NSRGYRV 319
           NSRGYRV
Sbjct: 238 NSRGYRV 244

[Close]

BLAST of Cp4.1LG18g00410 vs. TrEMBL
Match: A0A067JZH0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13954 PE=4 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 9.9e-91
Identity = 174/187 (93.05%), Postives = 182/187 (97.33%), Query Frame = 1


Query: 132 VGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKP 191
           +GIDL AGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMS++NKP
Sbjct: 1   MGIDLKAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKINKP 60

Query: 192 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 251
           PLSLSRLI FTKGKE KIAVVVGT+TDDIRVYEVPALKV ALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLISFTKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 252 TFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 311
           TFDQLALRAPLGQNTVLLRG KN+REAVKHFGPAPGVPHSH+KPYVRSKGRKFERARG+R
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGRR 180

Query: 312 NSRGYRV 319
           NSRG+RV
Sbjct: 181 NSRGFRV 187

[Close]

BLAST of Cp4.1LG18g00410 vs. TrEMBL
Match: A0A0D2TP40_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G301700 PE=4 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 9.9e-91
Identity = 174/187 (93.05%), Postives = 183/187 (97.86%), Query Frame = 1


Query: 132 VGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKP 191
           +GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMS+VNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKVNKP 60

Query: 192 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 251
           PLSLSRLI+F KGKE KIAVVVGT+TDDIRVYEVPALKV ALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLIEFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 252 TFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 311
           TFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHSH+KPYVRSKGRK+ERARG+R
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKYERARGRR 180

Query: 312 NSRGYRV 319
           NS+G+RV
Sbjct: 181 NSKGFRV 187

[Close]

BLAST of Cp4.1LG18g00410 vs. TrEMBL
Match: W9QQ74_9ROSA (60S ribosomal protein L18-3 OS=Morus notabilis GN=L484_011109 PE=4 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 9.9e-91
Identity = 174/193 (90.16%), Postives = 185/193 (95.85%), Query Frame = 1


Query: 126 VEADTPVGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFM 185
           V+A +  GIDLVAGGKSKK+KRTAPKSDDIYLKLLVKLYRFLVRRTGS FNAV+LKRLFM
Sbjct: 5   VDASSDDGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFM 64

Query: 186 SRVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEK 245
           S+VNKPPLSLSRLI+F KGKE K+AVVVGT+TDDIRVYEVPALKV ALRFTETARARIEK
Sbjct: 65  SKVNKPPLSLSRLIRFMKGKEDKVAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEK 124

Query: 246 AGGECLTFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFE 305
           AGGECLTFDQLALRAPLGQNTVLLRG KN+REAVKHFGPAPGVPHSH+KPYVRSKGRKFE
Sbjct: 125 AGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE 184

Query: 306 RARGKRNSRGYRV 319
           RARGKRNSRG+RV
Sbjct: 185 RARGKRNSRGFRV 197

[Close]

BLAST of Cp4.1LG18g00410 vs. TrEMBL
Match: A0A061F4C5_THECC (Ribosomal protein L18 OS=Theobroma cacao GN=TCM_026682 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 2.9e-90
Identity = 173/187 (92.51%), Postives = 183/187 (97.86%), Query Frame = 1


Query: 132 VGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKP 191
           +GIDLVAGGKSKK+KRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMS+VNKP
Sbjct: 1   MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKVNKP 60

Query: 192 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 251
           PLSLSRLI+F KGKE KIAVVVGT+TDDIRVYEVPALKV ALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLIEFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 252 TFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 311
           TFDQLALRAPLGQNTVLLRG KN+REAVKHFGPAPGVPHSH+KPYVRSKGRKFERARG+R
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGRR 180

Query: 312 NSRGYRV 319
           NS+G+RV
Sbjct: 181 NSKGFRV 187

[Close]

BLAST of Cp4.1LG18g00410 vs. TAIR10
Match: AT3G05590.1 (AT3G05590.1 ribosomal protein L18)

HSP 1 Score: 321.2 bits (822), Expect = 7.0e-88
Identity = 161/187 (86.10%), Postives = 176/187 (94.12%), Query Frame = 1


Query: 132 VGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKP 191
           +GIDL+AGGKSKKTKRTAPKSDD+YLKL VKLYRFLVRRT SKFN VILKRLFMS+VNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60

Query: 192 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 251
           PLSLSRL++F  GKE KIAV+VGTITDD+RV+E+PA+KV ALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 252 TFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 311
           TFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHSHSKPYVR+KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKR 180

Query: 312 NSRGYRV 319
            SRG++V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of Cp4.1LG18g00410 vs. TAIR10
Match: AT5G27850.1 (AT5G27850.1 Ribosomal protein L18e/L15 superfamily protein)

HSP 1 Score: 315.5 bits (807), Expect = 3.8e-86
Identity = 158/187 (84.49%), Postives = 176/187 (94.12%), Query Frame = 1


Query: 132 VGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKP 191
           +GIDL+AGGKSKKTKRTAPKSDD+YLKLLVKLYRFLVRR+ S FNAVILKRLFMS+VNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA 60

Query: 192 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 251
           PLSLSRL++F  GK+ KIAV+VGTITDD+RV+E+PA+KV ALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 252 TFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 311
           TFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHS++KPYVR KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKR 180

Query: 312 NSRGYRV 319
            SRG++V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of Cp4.1LG18g00410 vs. TAIR10
Match: AT1G09150.1 (AT1G09150.1 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein)

HSP 1 Score: 228.8 bits (582), Expect = 4.7e-60
Identity = 111/134 (82.84%), Postives = 120/134 (89.55%), Query Frame = 1


Query: 1   MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNL 60
           MFKKF  E++S+QNQVKASVQRRIRQSI +EYPGLE V++DLLPKK PLIV KC NHL L
Sbjct: 1   MFKKFCLEEISSQNQVKASVQRRIRQSIQDEYPGLESVMEDLLPKKIPLIVVKCPNHLTL 60

Query: 61  VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGG 120
           VVVNNVPLFF IRDGPYMPTLRLLHQYPNIMK+ QVDRGAIKFVL+GANIMCPGLTSPGG
Sbjct: 61  VVVNNVPLFFCIRDGPYMPTLRLLHQYPNIMKRFQVDRGAIKFVLSGANIMCPGLTSPGG 120

Query: 121 ALDDEVEADTPVGI 135
            LD EVEA+ PV I
Sbjct: 121 VLDQEVEAERPVAI 134

[Close]

BLAST of Cp4.1LG18g00410 vs. TAIR10
Match: AT2G47570.1 (AT2G47570.1 Ribosomal protein L18e/L15 superfamily protein)

HSP 1 Score: 197.6 bits (501), Expect = 1.2e-50
Identity = 98/135 (72.59%), Postives = 116/135 (85.93%), Query Frame = 1


Query: 185 MSRVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE 244
           MS+VNK PLSLSRL+++  GK+ KIAV+VGT+TDD+R+ +VPAL V ALRFTE+ARARI 
Sbjct: 1   MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 60

Query: 245 KAGGECLTFDQLALRAPL-GQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRK 304
           KAGGECLTFDQLAL  P   +NTVLLRG KN+REAVKHFGPAPGVPHSH+KPYVR  G+K
Sbjct: 61  KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120

Query: 305 FERARGKRNSRGYRV 319
            E ARG+R SRG++V
Sbjct: 121 IEIARGRRRSRGFKV 135

[Close]

BLAST of Cp4.1LG18g00410 vs. NCBI nr
Match: gi|778662398|ref|XP_011659839.1| (PREDICTED: 60S ribosomal protein L18-2-like [Cucumis sativus])

HSP 1 Score: 350.9 bits (899), Expect = 2.3e-93
Identity = 182/187 (97.33%), Postives = 184/187 (98.40%), Query Frame = 1


Query: 132 VGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKP 191
           +GIDLVAGGKSKKTKR APKSDDIYLKLLVKLYRFLVRRTGS FNAVILKRLFMS+VNKP
Sbjct: 1   MGIDLVAGGKSKKTKRVAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 192 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 251
           PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 120

Query: 252 TFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 311
           TFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 180

Query: 312 NSRGYRV 319
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of Cp4.1LG18g00410 vs. NCBI nr
Match: gi|700210952|gb|KGN66048.1| (hypothetical protein Csa_1G569250 [Cucumis sativus])

HSP 1 Score: 350.9 bits (899), Expect = 2.3e-93
Identity = 182/187 (97.33%), Postives = 184/187 (98.40%), Query Frame = 1


Query: 132 VGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKP 191
           +GIDLVAGGKSKKTKR APKSDDIYLKLLVKLYRFLVRRTGS FNAVILKRLFMS+VNKP
Sbjct: 58  MGIDLVAGGKSKKTKRVAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 117

Query: 192 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 251
           PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL
Sbjct: 118 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 177

Query: 252 TFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 311
           TFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR
Sbjct: 178 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 237

Query: 312 NSRGYRV 319
           NSRGYRV
Sbjct: 238 NSRGYRV 244

[Close]

BLAST of Cp4.1LG18g00410 vs. NCBI nr
Match: gi|659099453|ref|XP_008450608.1| (PREDICTED: 60S ribosomal protein L18-2 [Cucumis melo])

HSP 1 Score: 348.6 bits (893), Expect = 1.2e-92
Identity = 181/187 (96.79%), Postives = 183/187 (97.86%), Query Frame = 1


Query: 132 VGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKP 191
           +GIDLVAGGKSKKTKR APKSDDIYLKLLVKLYRFLVRRTGS FNAVILKRLFMS+VNKP
Sbjct: 1   MGIDLVAGGKSKKTKRVAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 192 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 251
           PLSLSRLIQF KGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 120

Query: 252 TFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 311
           TFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 180

Query: 312 NSRGYRV 319
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of Cp4.1LG18g00410 vs. NCBI nr
Match: gi|659070222|ref|XP_008454015.1| (PREDICTED: 60S ribosomal protein L18-3 [Cucumis melo])

HSP 1 Score: 342.8 bits (878), Expect = 6.4e-91
Identity = 175/187 (93.58%), Postives = 183/187 (97.86%), Query Frame = 1


Query: 132 VGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKP 191
           +GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGS FNAVILKRLFMS+VNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 192 PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 251
           P+SLSRLI++ KGKE+KIAVVVGT+TDDIRVYEVPALKV ALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 252 TFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 311
           TFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHSH+KPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 312 NSRGYRV 319
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of Cp4.1LG18g00410 vs. NCBI nr
Match: gi|703068658|ref|XP_010088293.1| (60S ribosomal protein L18-3 [Morus notabilis])

HSP 1 Score: 341.7 bits (875), Expect = 1.4e-90
Identity = 174/193 (90.16%), Postives = 185/193 (95.85%), Query Frame = 1


Query: 126 VEADTPVGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFM 185
           V+A +  GIDLVAGGKSKK+KRTAPKSDDIYLKLLVKLYRFLVRRTGS FNAV+LKRLFM
Sbjct: 5   VDASSDDGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFM 64

Query: 186 SRVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEK 245
           S+VNKPPLSLSRLI+F KGKE K+AVVVGT+TDDIRVYEVPALKV ALRFTETARARIEK
Sbjct: 65  SKVNKPPLSLSRLIRFMKGKEDKVAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEK 124

Query: 246 AGGECLTFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFE 305
           AGGECLTFDQLALRAPLGQNTVLLRG KN+REAVKHFGPAPGVPHSH+KPYVRSKGRKFE
Sbjct: 125 AGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE 184

Query: 306 RARGKRNSRGYRV 319
           RARGKRNSRG+RV
Sbjct: 185 RARGKRNSRGFRV 197

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g00410 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL182_ARATH	1.2e-86	86.10	60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=1 SV=2	[more]
RL183_ARATH	6.8e-85	84.49	60S ribosomal protein L18-3 OS=Arabidopsis thaliana GN=RPL18C PE=2 SV=1	[more]
RL18_CICAR	1.9e-79	82.07	60S ribosomal protein L18 (Fragment) OS=Cicer arietinum GN=RPL18 PE=2 SV=1	[more]
RL181_ARATH	6.4e-75	76.06	Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana GN=RPL18A PE=2 SV=3	[more]
RL18_TIMBA	1.9e-63	67.23	60S ribosomal protein L18 OS=Timarcha balearica GN=RpL18 PE=2 SV=1	[more]

BLAST of Cp4.1LG18g00410 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWD1_CUCSA	1.6e-93	97.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569250 PE=4 SV=1	[more]
A0A067JZH0_JATCU	9.9e-91	93.05	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13954 PE=4 SV=1	[more]
A0A0D2TP40_GOSRA	9.9e-91	93.05	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G301700 PE=4 SV=1	[more]
W9QQ74_9ROSA	9.9e-91	90.16	60S ribosomal protein L18-3 OS=Morus notabilis GN=L484_011109 PE=4 SV=1	[more]
A0A061F4C5_THECC	2.9e-90	92.51	Ribosomal protein L18 OS=Theobroma cacao GN=TCM_026682 PE=4 SV=1	[more]

BLAST of Cp4.1LG18g00410 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05590.1	7.0e-88	86.10	ribosomal protein L18	[more]
AT5G27850.1	3.8e-86	84.49	Ribosomal protein L18e/L15 superfamily protein	[more]
AT1G09150.1	4.7e-60	82.84	pseudouridine synthase and archaeosine transglycosylase (PUA) domain...	[more]
AT2G47570.1	1.2e-50	72.59	Ribosomal protein L18e/L15 superfamily protein	[more]

BLAST of Cp4.1LG18g00410 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778662398\|ref\|XP_011659839.1\|	2.3e-93	97.33	PREDICTED: 60S ribosomal protein L18-2-like [Cucumis sativus]	[more]
gi\|700210952\|gb\|KGN66048.1\|	2.3e-93	97.33	hypothetical protein Csa_1G569250 [Cucumis sativus]	[more]
gi\|659099453\|ref\|XP_008450608.1\|	1.2e-92	96.79	PREDICTED: 60S ribosomal protein L18-2 [Cucumis melo]	[more]
gi\|659070222\|ref\|XP_008454015.1\|	6.4e-91	93.58	PREDICTED: 60S ribosomal protein L18-3 [Cucumis melo]	[more]
gi\|703068658\|ref\|XP_010088293.1\|	1.4e-90	90.16	60S ribosomal protein L18-3 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **INTERPRO**
Term	Definition
IPR021131	Ribosomal_L18e/L15P
IPR015947	PUA-like_sf
IPR004521	Uncharacterised_CHP00451
IPR002478	PUA
IPR000039	Ribosomal_L18e

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0009086	methionine biosynthetic process
biological_process	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG18g00410.1	Cp4.1LG18g00410.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000039	Ribosomal protein L18e	PANTHER	PTHR10934	60S RIBOSOMAL PROTEIN L18	coord: 133..318 score: 1.3E
IPR002478	PUA domain	PFAM	PF01472	PUA	coord: 93..130 score: 4.
IPR002478	PUA domain	PROFILE	PS50890	PUA	coord: 91..162 score: 9
IPR004521	Uncharacterised domain CHP00451	TIGRFAMs	TIGR00451	TIGR00451	coord: 62..123 score: 4.4
IPR015947	PUA-like domain	GENE3D	G3DSA:2.30.130.10		coord: 90..134 score: 1.7
IPR015947	PUA-like domain	unknown	SSF88697	PUA domain-like	coord: 92..170 score: 5.2
IPR021131	Ribosomal protein L18e/L15P	PFAM	PF17135	Ribosomal_L18	coord: 133..318 score: 4.1
IPR021131	Ribosomal protein L18e/L15P	unknown	SSF52080	Ribosomal proteins L15p and L18e	coord: 151..270 score: 4.32
None	No IPR available	GENE3D	G3DSA:3.100.10.10		coord: 152..270 score: 9.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG18g00410	Cucsa.181760	Cucumber (Gy14) v1	cgycpeB0499
Cp4.1LG18g00410	CmaCh10G011310	Cucurbita maxima (Rimu)	cmacpeB081
Cp4.1LG18g00410	CmoCh10G012110	Cucurbita moschata (Rifu)	cmocpeB056
Cp4.1LG18g00410	Cla005209	Watermelon (97103) v1	cpewmB351
Cp4.1LG18g00410	Csa1G569250	Cucumber (Chinese Long) v2	cpecuB353
Cp4.1LG18g00410	ClCG03G017220	Watermelon (Charleston Gray)	cpewcgB323
Cp4.1LG18g00410	CSPI01G26310	Wild cucumber (PI 183967)	cpecpiB354
Cp4.1LG18g00410	Lsi06G000940	Bottle gourd (USVL1VR-Ls)	cpelsiB302
Cp4.1LG18g00410	CsaV3_1G038670	Cucumber (Chinese Long) v3	cpecucB0432
Cp4.1LG18g00410	Bhi02G001712	Wax gourd	cpewgoB0462
Cp4.1LG18g00410	CsGy1G025570	Cucumber (Gy14) v2	cgybcpeB043

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG18g00410	Cp4.1LG04g02170	Cucurbita pepo (Zucchini)	cpecpeB368

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG18g00410	Watermelon (Charleston Gray)	cpewcgB328
Cp4.1LG18g00410	Melon (DHL92) v3.5.1	cpemeB331
Cp4.1LG18g00410	Melon (DHL92) v3.6.1	cpemedB389
Cp4.1LG18g00410	Wax gourd	cpewgoB0470