Cp4.1LG17g07480.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG17g07480.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	D27 family protein, putative
Location	Cp4.1LG17 : 5900950 .. 5904007 (-)
Sequence length	1164

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTATAGTTTAGTTAGTTATCAAAGGAATATTTATCTAATTGCCCTCGCAAAATTGGGATATTCGTTCTAAAAGCCCAAAACAGTGAAGCGTTTCGGTTGTGTGTGGAAAGTGAAAATGAAGCCAGTGGCTCTTCTTCTTCATCCTCCAGCCACCATCTCTTCAGCTGCTCTTCGTTTCTCCTCCAAATCCCACCTTCGAAAGCGTCCCTTAAACATCTCCTGCTTCGCTGTTCAATCTGAATCGGTAGGGTTTCAATCTTCCCCTCGCCGTTTTTGAATTCAATCGACTTTTTCTTATCTTCATTGTATTTGAATCAATCCATAGACAAAGGTTGAAGTATCTTCAAAGCCCGAATACAAGCCTGGAATGCTCGACGATTTCTTCCTCAACCTCTTCCGAAGCAAAATGGTTCAGGTTGTTTAATTTCACACTTCACTTTCGTTGTTATCACCAATCGAGTTTCTGAGAAAGCAAGTAGTTGAAGTTAATTCTTTAATGTGTGTTTTGACTGCAGGAAGTCGGCTGGGATTCTGAAAAACCTGGATATGATGGACTAATCGAAGTCGCTAACAGGCTCACGATGAAGGGCAAATCCAATTCCGATACCATAGAAGCGTCGGTATTTCTTTTTTAAGAACAATTTGTAGATACAGAACAGAACATCTAAGTTTTTTGTACTCCTTGAACATTTGATTGTAGCTGAAATTGTAATCGCGAGTTAGGTTCGTAGATTTCATTATGGAAATTTGGTTATGGCTGCAGGTTCGAATTTTAATAGCTTTGTTTCCTCCTCTTCTATTGGAACTTTATCGGATGCTGGTATCACCTATAGCTGGTGGCAAAGTGGCTGCGATTATGGTCGGTGAGTTGAGCCCTTCAATCTTTATCTGTATCTAGAATTTGGATATTGTTCCTTTTTATTTGGGAATCAATTACTTTTCATTTGTTTGACTTTGATCCATCTGGTGTAAGATTTTGAAGATTAGTTGAACTGTTCTTCTCTTTTTTTCTTTTTCCTCTGTGTTGAAAGCAAGGGTGACTGCGTTTACTTGTCAATGGCTAATGGGAACTTGTACTGTAAATTCAATTGAATTACCTGATGGATCGTCTTGCCAAAGTGGGGTATGAATTATTGATTACCATGTTCATGAATTTCCGTGGGAGTTGCTGAGATTTTGGATTTTTTAAACATCAATTCAATATTTAAAGCTTACTGATGCAGGTTTTCGTTGAAAAATGCAAGTACTTAGAAGAAAGTAAATGCATAGGAATTTGTCTCAACACTTGCAAGTTTCCTACTCAGGTTTGTTCTTGCCAACCTATATATATCAAGCTCTTTCTTTACATTACTGGTAATTTGGGAACGTCTTGTTCGTTCGAGTCTCTTGATTCTGCACACACTATTCATTTGACTTGACTCGAACAAATCTCGACAACCTTGATTGTGATGTAGAGCTTCTTCAAGAACCAGATGGGAATTCCTCTATTAATGGAGCCAAACTTCAATGACTATAGTTGTCAGGTAATTCTATCACTTAACATTTCTGTTCCACTGTTGGGTAGCTTTGTGGGTAGAACGGATAAGTCCTATTACATGATATTGTTTGTATCGATCTCCTGGAATGTTTGGATCCAAAGTATTGTGACTTGATTGAAATGAAGTTACTGAATTTAGTGTGATTCTCCTTTTAACCTTGACGAACACTGCTATTGACATCTAGACTCTAGTTCTATGAAGATATCATTAGCCAGATTCCCAATTGAATTGAATCAAATAAATCCATAGTTTGGAAATGGTTTTGGGATTAGTGTATGGGACGTGTAGTGTGTTGAAGATTGTTAGGAGGGAGTCCCACGTTGGCTAATTTAAAGAATGATTATGAGTTTATAAGTAAGGAATACATCTACATTAGCATGAGGCCTTTTGGAGAAGCCCAAAGCAAAGCCATGACAGCTTAGGCTCAAAGTAGGACAATATCGTCCCATTGTTATGCTCAAAGTGGATTGTTAAGGTGAGGCTGTTCGAGGGCTACATAGACCTCAGGGAGGATTGTTCGGAGGGAGTCCCACATTGACTAATTTAGGAAATGATCATAGGTTCATAAGTAAGGAATACATCTCCCCTTTAGACTCTAGCTCTATGAAGATGTCATTAGCCACTTATTGAATTGAACCAAATAAATCCATAGTTTGGAAATGCTTTTGGCTTTTGGGACTAGTGTATGGAACTTGTTGTGGCTGTCACTTTCTGTAATTTTGATCAAAGGGCGGTTTAACTTAGCAGAATTGGGAGTGAAATATGCATCCTAGCGTCAACCACAATAGTTTGATTTGTCCATTTTAAGTATAAGCTCTTGTGGCTTTGCTTTTGGTTTTGGTTTCCCCAAAAAGGCCTTGTACCAACGAAAATGTATTCCTGATTTGTCCATTTTAAGTATAAGCTCTTGTGGCTTTGCTTTTGGTTTTGGTTTCCCCAAAAGGCCTTGTACCAACGAAAATGTATTCCTTACTTATAAACTCACGATCACCCCTTAATTAGTCGATGTGAGACTCCTCTCCCAACAATCTTCGCACAACCCACCTGTTTAATGATACCCATATCAGCACCTTGTATGAATCTAATCAACTTCACTTTCCTTTTTTTTCTTCCTTGTGGGGCAACCGAATGTCAAAGTTCAAATTTGGTGTTCTTCCTCCTCTGCCTGAAGAAGACAGCATACTGAAAGAGCCTTGCTTGGAGATATGTCCTCATGCCACAAGAAGAAGAGAAGTTTTGAGTAAGATGAGTGCAACGCAGTGCCCTAAAGCATAGACCGAGCAGCCTATGACGAGCTTGGGATGGTGCTGAATGAGCTGGGATTGCTTGCTAACCGATTGCCTTCCACATCTCTGAATTTTCTTGTACTAAAAAAAAAAAAAAAATTATGAGTTTATTTATTTGAAGGCTTCAAATAATCTCCAAACTTTTGAAAAGTTTATAAACTTTTTCAATTTTATGTCACTAAACTTTAAAAAAATAGTTAATAATAGGTTCTTAAACTCTCAATTTTATGTC

mRNA sequence

AGTTATAGTTTAGTTAGTTATCAAAGGAATATTTATCTAATTGCCCTCGCAAAATTGGGATATTCGTTCTAAAAGCCCAAAACAGTGAAGCGTTTCGGTTGTGTGTGGAAAGTGAAAATGAAGCCAGTGGCTCTTCTTCTTCATCCTCCAGCCACCATCTCTTCAGCTGCTCTTCGTTTCTCCTCCAAATCCCACCTTCGAAAGCGTCCCTTAAACATCTCCTGCTTCGCTGTTCAATCTGAATCGACAAAGGTTGAAGTATCTTCAAAGCCCGAATACAAGCCTGGAATGCTCGACGATTTCTTCCTCAACCTCTTCCGAAGCAAAATGGTTCAGGAAGTCGGCTGGGATTCTGAAAAACCTGGATATGATGGACTAATCGAAGTCGCTAACAGGCTCACGATGAAGGGCAAATCCAATTCCGATACCATAGAAGCGTCGGTTCGAATTTTAATAGCTTTGTTTCCTCCTCTTCTATTGGAACTTTATCGGATGCTGGTATCACCTATAGCTGGTGGCAAAGTGGCTGCGATTATGGTCGCAAGGGTGACTGCGTTTACTTGTCAATGGCTAATGGGAACTTGTACTGTAAATTCAATTGAATTACCTGATGGATCGTCTTGCCAAAGTGGGGTTTTCGTTGAAAAATGCAAGTACTTAGAAGAAAGTAAATGCATAGGAATTTGTCTCAACACTTGCAAGTTTCCTACTCAGAGCTTCTTCAAGAACCAGATGGGAATTCCTCTATTAATGGAGCCAAACTTCAATGACTATAGTTGTCAGTTCAAATTTGGTGTTCTTCCTCCTCTGCCTGAAGAAGACAGCATACTGAAAGAGCCTTGCTTGGAGATATGTCCTCATGCCACAAGAAGAAGAGAAGTTTTGAGTAAGATGAGTGCAACGCAGTGCCCTAAAGCATAGACCGAGCAGCCTATGACGAGCTTGGGATGGTGCTGAATGAGCTGGGATTGCTTGCTAACCGATTGCCTTCCACATCTCTGAATTTTCTTGTACTAAAAAAAAAAAAAAAATTATGAGTTTATTTATTTGAAGGCTTCAAATAATCTCCAAACTTTTGAAAAGTTTATAAACTTTTTCAATTTTATGTCACTAAACTTTAAAAAAATAGTTAATAATAGGTTCTTAAACTCTCAATTTTATGTC

Coding sequence (CDS)

ATGAAGCCAGTGGCTCTTCTTCTTCATCCTCCAGCCACCATCTCTTCAGCTGCTCTTCGTTTCTCCTCCAAATCCCACCTTCGAAAGCGTCCCTTAAACATCTCCTGCTTCGCTGTTCAATCTGAATCGACAAAGGTTGAAGTATCTTCAAAGCCCGAATACAAGCCTGGAATGCTCGACGATTTCTTCCTCAACCTCTTCCGAAGCAAAATGGTTCAGGAAGTCGGCTGGGATTCTGAAAAACCTGGATATGATGGACTAATCGAAGTCGCTAACAGGCTCACGATGAAGGGCAAATCCAATTCCGATACCATAGAAGCGTCGGTTCGAATTTTAATAGCTTTGTTTCCTCCTCTTCTATTGGAACTTTATCGGATGCTGGTATCACCTATAGCTGGTGGCAAAGTGGCTGCGATTATGGTCGCAAGGGTGACTGCGTTTACTTGTCAATGGCTAATGGGAACTTGTACTGTAAATTCAATTGAATTACCTGATGGATCGTCTTGCCAAAGTGGGGTTTTCGTTGAAAAATGCAAGTACTTAGAAGAAAGTAAATGCATAGGAATTTGTCTCAACACTTGCAAGTTTCCTACTCAGAGCTTCTTCAAGAACCAGATGGGAATTCCTCTATTAATGGAGCCAAACTTCAATGACTATAGTTGTCAGTTCAAATTTGGTGTTCTTCCTCCTCTGCCTGAAGAAGACAGCATACTGAAAGAGCCTTGCTTGGAGATATGTCCTCATGCCACAAGAAGAAGAGAAGTTTTGAGTAAGATGAGTGCAACGCAGTGCCCTAAAGCATAG

Protein sequence

MKPVALLLHPPATISSAALRFSSKSHLRKRPLNISCFAVQSESTKVEVSSKPEYKPGMLDDFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPLLLELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKYLEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILKEPCLEICPHATRRREVLSKMSATQCPKA

Homology

[Close]

BLAST of Cp4.1LG17g07480.1 vs. Swiss-Prot
Match: D27_ARATH (Beta-carotene isomerase D27, chloroplastic OS=Arabidopsis thaliana GN=D27 PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.3e-28
Identity = 79/243 (32.51%), Postives = 126/243 (51.85%), Query Frame = 1


Query: 13  TISSAALRFSSKSHLRKRPLNISCFAVQSESTKVEVSSKPEYKPGMLDDFFLNL---FRS 72
           T S    R S    L  +P+         E+ ++E S+       + D FF  +   + S
Sbjct: 22  TRSGLDRRSSISPTLCSKPVYSGKLKAAKETARIETSNTKN--ASIEDSFFSKIAINYLS 81

Query: 73  KMVQE---VGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIAL---FPPLLLEL 132
           K +Q+   +   S+   YD L++ A R++     N DT +    +L +L    P ++  L
Sbjct: 82  KNLQDAAGISSSSKSTDYDRLVDTATRVSR----NFDTKQQHEFVLSSLDRALPTVISSL 141

Query: 133 YRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKYLEE 192
            +M   P    KV+  + A  T  +  WL+G   V   E+ +G   +S V++EKC++LE+
Sbjct: 142 IKMAFPP---SKVSRELFALFTTISFAWLVGPSEVRETEV-NGRKEKSVVYIEKCRFLEQ 201

Query: 193 SKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILKEPCL 247
           S C+G+C + CK P+Q F KN +G+P+ MEP+FND SC+  FG  PP  E+D  +K+PC 
Sbjct: 202 SNCVGMCTHICKIPSQIFIKNSLGMPIYMEPDFNDLSCKMMFGREPPEIEDDPAMKQPCF 254

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BLAST of Cp4.1LG17g07480.1 vs. Swiss-Prot
Match: D27_ORYSJ (Beta-carotene isomerase D27, chloroplastic OS=Oryza sativa subsp. japonica GN=D27 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.6e-23
Identity = 62/211 (29.38%), Postives = 105/211 (49.76%), Query Frame = 1


Query: 38  AVQSESTKVEVSSKPE---YKPGMLDDFFLNLFRSKMVQEVGWDSEKPGYDGLIEVA--- 97
           A    + + E ++ P    Y+    D   +      + +  G  +EK GY+ LI+ A   
Sbjct: 61  AAMMSTVQTETAAAPPATVYRDSWFDKLAIGYLSRNLQEASGLKNEKDGYESLIDAALAI 120

Query: 98  NRLTMKGKSNSDTIEASVRILIALFPPLLLELYRMLVSPIAGGKVAAIMVARVTAFTCQW 157
           +R+    K +    +A  R L    P  +L + ++++ P    + +    A  T     W
Sbjct: 121 SRIFSLDKQSEIVTQALERAL----PSYILTMIKVMMPP---SRFSREYFAAFTTIFFPW 180

Query: 158 LMGTCTVNSIELPDGSSCQSGVFVEKCKYLEESKCIGICLNTCKFPTQSFFKNQMGIPLL 217
           L+G C V   E+ +G   ++ V++ KC++LE + C+G+C N CK P Q F ++ +G+ + 
Sbjct: 181 LVGPCEVMESEV-EGRKEKNVVYIPKCRFLESTNCVGMCTNLCKIPCQKFIQDSLGMKVY 240

Query: 218 MEPNFNDYSCQFKFGVLPPLPEEDSILKEPC 243
           M PNF D SC+  FG  P  PE+D  LK+PC
Sbjct: 241 MSPNFEDMSCEMIFGQQP--PEDDPALKQPC 261

[Close]

BLAST of Cp4.1LG17g07480.1 vs. TrEMBL
Match: A0A0A0K9J2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G407750 PE=4 SV=1)

HSP 1 Score: 467.2 bits (1201), Expect = 1.3e-128
Identity = 234/268 (87.31%), Postives = 247/268 (92.16%), Query Frame = 1


Query: 1   MKPVALLLHPPATISSAALRF-SSKSHLRKRPLNISCFAVQSESTKVEVSSKPEYKPGML 60
           MKPVALLLHPP TIS A LRF SSKSHLR RP  +SC A+QS S K   SSK EYKPG+L
Sbjct: 1   MKPVALLLHPP-TISPAPLRFTSSKSHLRNRPFILSCSALQSGSIKDGASSKAEYKPGIL 60

Query: 61  DDFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPL 120
           DDFFLN+FRSKMVQEVGWDSEKPGYDGLIEVA+RLTM GK+NS+TIEASVRILIALFPPL
Sbjct: 61  DDFFLNVFRSKMVQEVGWDSEKPGYDGLIEVASRLTMTGKTNSETIEASVRILIALFPPL 120

Query: 121 LLELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCK 180
           LL+LYR+LVSPIAGGKVAAIMVARVTA TCQWLMGTCTVNSIELPDGSSCQSGVFVEKCK
Sbjct: 121 LLKLYRILVSPIAGGKVAAIMVARVTALTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCK 180

Query: 181 YLEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILK 240
           YLEESKCIGIC+NTCK PTQSFFK+QMGIPLLMEPNF DYSCQFKFGVLPPLPEEDSILK
Sbjct: 181 YLEESKCIGICINTCKLPTQSFFKDQMGIPLLMEPNFTDYSCQFKFGVLPPLPEEDSILK 240

Query: 241 EPCLEICPHATRRREVLSKMSATQCPKA 268
           EPCLEICP+ATRRREV  K+SA QCPKA
Sbjct: 241 EPCLEICPNATRRREVSGKISAAQCPKA 267

[Close]

BLAST of Cp4.1LG17g07480.1 vs. TrEMBL
Match: B9RNC7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1346590 PE=4 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 6.3e-99
Identity = 183/268 (68.28%), Postives = 214/268 (79.85%), Query Frame = 1


Query: 1   MKPVALLLHPPATISSAALRFSSKSHLRKRPLNISCFAVQSESTKVE-VSSKPEYKPGML 60
           MKP+ALL   P +IS +         L  R   ISC ++QSE  K E V ++ EYKPG  
Sbjct: 20  MKPLALLR--PLSISVSPPSRLKLPRLFNRSFRISCSSLQSEPEKTEDVGTRSEYKPGFF 79

Query: 61  DDFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPL 120
           DDFFL LFR+KMV EVGWDSEK GYDGLIEVANRL + G SN+DT +A+VRIL +LFPPL
Sbjct: 80  DDFFLTLFRNKMVAEVGWDSEKAGYDGLIEVANRLMLTGTSNADTRDAAVRILRSLFPPL 139

Query: 121 LLELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCK 180
           LL+LY++L+SP+  GKVAAIMVARVTA TCQWLMGTCTVNSI+LPDGSSC+SGVFVE+CK
Sbjct: 140 LLDLYKLLISPLGEGKVAAIMVARVTAITCQWLMGTCTVNSIDLPDGSSCESGVFVERCK 199

Query: 181 YLEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILK 240
           YLEESKC+GIC+NTCK PTQ+FFK+ MG+PLLMEPNF DYSCQFKFGVLPP PE+DS LK
Sbjct: 200 YLEESKCVGICVNTCKLPTQAFFKDYMGVPLLMEPNFTDYSCQFKFGVLPPQPEDDSTLK 259

Query: 241 EPCLEICPHATRRREVLSKMSATQCPKA 268
           EPCLE CP A+RR+     ++   CPKA
Sbjct: 260 EPCLEACPIASRRQ---VSLNIAHCPKA 282

[Close]

BLAST of Cp4.1LG17g07480.1 vs. TrEMBL
Match: A0A059AY03_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01003 PE=4 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 2.0e-97
Identity = 173/268 (64.55%), Postives = 213/268 (79.48%), Query Frame = 1


Query: 1   MKPVALLLHPPATISSAALRFSSKSHLRKRPLNISCFAVQSESTKVE-VSSKPEYKPGML 60
           MKP+ L    P+ + ++      +   R  P   + F++ S++   +  + + EYKPG+ 
Sbjct: 20  MKPLVL----PSPLPTSPFSLRHRPPRRASPRFPTRFSLHSKTIAADDAAPRAEYKPGVF 79

Query: 61  DDFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPL 120
           DD FLNLFRSKMV+EVGWDSEKPGYDGLIEVA+RL MKG SNSDT +A++RIL +LFPP 
Sbjct: 80  DDLFLNLFRSKMVKEVGWDSEKPGYDGLIEVAHRLMMKGSSNSDTRDAAIRILRSLFPPF 139

Query: 121 LLELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCK 180
           LLELY++L++PI  GK+AA+MVARVTA TCQWLMG CTVNS++L DG+SCQSGVFVE+CK
Sbjct: 140 LLELYQLLIAPIGEGKLAAVMVARVTALTCQWLMGKCTVNSVDLLDGTSCQSGVFVERCK 199

Query: 181 YLEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILK 240
           YLEESKC+GIC+NTCK PTQSFFK+ MG+PLLMEPNF DYSCQFKFG+ PP P+ED+ LK
Sbjct: 200 YLEESKCVGICVNTCKLPTQSFFKDYMGVPLLMEPNFEDYSCQFKFGIHPPQPQEDAALK 259

Query: 241 EPCLEICPHATRRREVLSKMSATQCPKA 268
           EPCLEICP+A RRREV+      QCPKA
Sbjct: 260 EPCLEICPNAIRRREVVQNTELAQCPKA 283

[Close]

BLAST of Cp4.1LG17g07480.1 vs. TrEMBL
Match: W9QMD1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009732 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 2.7e-97
Identity = 171/218 (78.44%), Postives = 193/218 (88.53%), Query Frame = 1


Query: 51  KPEYKPGMLDDFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVR 110
           K EYKPG+ DD FLNLFR KMVQEVGWDS+K GY GLIEVAN L MK KSNS+T EA+VR
Sbjct: 56  KLEYKPGVFDDLFLNLFRDKMVQEVGWDSDKAGYGGLIEVANHLVMKSKSNSNTTEAAVR 115

Query: 111 ILIALFPPLLLELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQ 170
           IL +LFPP LLELY+MLV+P+AGGKVAA+MVARVTA TCQWLMG CTVNS++LPDG+SC 
Sbjct: 116 ILRSLFPPWLLELYKMLVAPLAGGKVAAVMVARVTALTCQWLMGRCTVNSVDLPDGTSCA 175

Query: 171 SGVFVEKCKYLEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPP 230
           SGVFVEKCKYLEESKC+GIC+NTC+ PTQSFFK+ MG+PLLMEPNF DYSCQFKFGV PP
Sbjct: 176 SGVFVEKCKYLEESKCVGICINTCRLPTQSFFKDYMGVPLLMEPNFTDYSCQFKFGVNPP 235

Query: 231 LPEEDSILKEPCLEICPHATRRREVLSKMSATQ-CPKA 268
           LP+ D+ILKEPCLEICP+ATRRRE+ S  +A Q CPKA
Sbjct: 236 LPQYDAILKEPCLEICPNATRRRELASNRTADQRCPKA 273

[Close]

BLAST of Cp4.1LG17g07480.1 vs. TrEMBL
Match: A0A151SMV1_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_002403 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 1.3e-96
Identity = 169/247 (68.42%), Postives = 198/247 (80.16%), Query Frame = 1


Query: 25  SHLRKRPLNISCFAVQSESTKVE-----VSSKPEYKPGMLDDFFLNLFRSKMVQEVGWDS 84
           S +R     +S  +  S  +K        ++KPEYKPG+ DD FLNLFRSK+VQEVGWDS
Sbjct: 20  SSVRNHRFRVSFSSTSSPGSKTVEQVGIAAAKPEYKPGVFDDLFLNLFRSKLVQEVGWDS 79

Query: 85  EKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPLLLELYRMLVSPIAGGKVAAI 144
           +KPGYDGLIEVAN L  KG +NSDT+E +VRIL +LFPP LLELY+ML++PI GGK+AA+
Sbjct: 80  KKPGYDGLIEVANLLMKKGTTNSDTVETTVRILRSLFPPYLLELYKMLIAPIGGGKIAAM 139

Query: 145 MVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKYLEESKCIGICLNTCKFPTQ 204
           MVARVT  TCQWLMG C VNSI+LPDG+SC SGV+VE+CKYLEESKC GIC NTCKFPTQ
Sbjct: 140 MVARVTVLTCQWLMGPCKVNSIDLPDGTSCSSGVYVERCKYLEESKCAGICTNTCKFPTQ 199

Query: 205 SFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILKEPCLEICPHATRRREVLSKM 264
           +FFK+ MG+PLLMEPNF DYSCQFKFGVLPPLPE+DSILKEPCLE CP+A+ RR     +
Sbjct: 200 TFFKDHMGVPLLMEPNFADYSCQFKFGVLPPLPEDDSILKEPCLEACPNASLRRMAARNI 259

Query: 265 SATQCPK 267
             T CPK
Sbjct: 260 DVTACPK 266

[Close]

BLAST of Cp4.1LG17g07480.1 vs. TAIR10
Match: AT4G01995.1 (AT4G01995.1 unknown protein)

HSP 1 Score: 298.1 bits (762), Expect = 5.3e-81
Identity = 153/265 (57.74%), Postives = 194/265 (73.21%), Query Frame = 1


Query: 4   VALLLHPPATISSAALRFSSKSHLRKRPLNISCFAVQSESTKV-EVSSKPEYKPGMLDDF 63
           + +LL PP TI  +   FS+K  L +R   + C    S   K  E + K EYKPG LDDF
Sbjct: 5   IQVLLPPPTTIVFSN-SFSTKLILTRR---LRCRISNSSEVKSDEGAPKLEYKPGPLDDF 64

Query: 64  FLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPLLLE 123
           F+  FR+K+V+EVG DSEKPGY GLIE+   L +KG++ S+T +A+VRIL +LFPPL+LE
Sbjct: 65  FMQSFRNKLVEEVGSDSEKPGYVGLIELVKLLLLKGRTRSETSDAAVRILKSLFPPLILE 124

Query: 124 LYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKYLE 183
           LY++L++PIA GK+AA+MVARVT  TCQWLMG   VN I+LP+G S  SGVFVEKC+YLE
Sbjct: 125 LYKLLIAPIAQGKLAALMVARVTVLTCQWLMGPSKVNIIDLPNGESWDSGVFVEKCQYLE 184

Query: 184 ESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILKEPC 243
           ESKC+G+C+NTCK PTQ+FFK+ MG+PL+MEPNF DYSCQFKFGV P  PE+D  + EPC
Sbjct: 185 ESKCVGVCINTCKLPTQTFFKDYMGVPLVMEPNFKDYSCQFKFGVAP--PEDDGNVNEPC 244

Query: 244 LEICPHATRRREVLSKMSATQCPKA 268
            E C  A RR     K+ + +CP A
Sbjct: 245 FETCSIAGRR-----KLKSGECPLA 258

[Close]

BLAST of Cp4.1LG17g07480.1 vs. TAIR10
Match: AT1G64680.1 (AT1G64680.1 unknown protein)

HSP 1 Score: 141.7 bits (356), Expect = 6.4e-34
Identity = 89/259 (34.36%), Postives = 136/259 (52.51%), Query Frame = 1


Query: 17  AALRFSSKSHLRKRPLNISCFAVQSESTKVEVSSKPEYKPGMLDDFFLNLFRSKMVQ--- 76
           AA+      +L  R  +  C   +       +  K  Y+ G+++  F+ LF  KM +   
Sbjct: 2   AAIASLQAVNLTFRRRSTRCGIAEPSGEPAPMGLKTRYEDGLVERVFMGLFARKMDKFGS 61

Query: 77  EVGWDSEKPG-----YDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPLLLELYRMLV 136
           +   D+++ G     Y+  +EV+ R+ M+G+S     EA   +L+++ PP   E +R L 
Sbjct: 62  KKKKDTKEKGFWEYDYESFVEVSKRV-MQGRSRVQQQEAVREVLLSMLPPGAPEQFRKLF 121

Query: 137 SPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKYLEESKCIG 196
            P    K AA   A +T     WL+G   V  +E+ +G   +SGV ++KC+YLE S C+G
Sbjct: 122 PPT---KWAAEFNAALTVPFFHWLVGPSQVIEVEV-NGVKQRSGVRIKKCRYLENSGCVG 181

Query: 197 ICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILKEPCL-EICP 256
           +C+N CK PTQ FF N+ G+PL M PN+ D SC+  +G  PP  EED   K+PCL +IC 
Sbjct: 182 MCVNMCKIPTQDFFTNEFGLPLTMNPNYEDMSCEMIYGQAPPAFEEDVATKQPCLADICS 241

Query: 257 HATRRREVLSKMSATQCPK 267
                   +S  S+  CPK
Sbjct: 242 --------MSNPSSPICPK 247

[Close]

BLAST of Cp4.1LG17g07480.1 vs. TAIR10
Match: AT1G03055.1 (AT1G03055.1 unknown protein)

HSP 1 Score: 128.3 bits (321), Expect = 7.3e-30
Identity = 79/243 (32.51%), Postives = 126/243 (51.85%), Query Frame = 1


Query: 13  TISSAALRFSSKSHLRKRPLNISCFAVQSESTKVEVSSKPEYKPGMLDDFFLNL---FRS 72
           T S    R S    L  +P+         E+ ++E S+       + D FF  +   + S
Sbjct: 22  TRSGLDRRSSISPTLCSKPVYSGKLKAAKETARIETSNTKN--ASIEDSFFSKIAINYLS 81

Query: 73  KMVQE---VGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIAL---FPPLLLEL 132
           K +Q+   +   S+   YD L++ A R++     N DT +    +L +L    P ++  L
Sbjct: 82  KNLQDAAGISSSSKSTDYDRLVDTATRVSR----NFDTKQQHEFVLSSLDRALPTVISSL 141

Query: 133 YRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKYLEE 192
            +M   P    KV+  + A  T  +  WL+G   V   E+ +G   +S V++EKC++LE+
Sbjct: 142 IKMAFPP---SKVSRELFALFTTISFAWLVGPSEVRETEV-NGRKEKSVVYIEKCRFLEQ 201

Query: 193 SKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILKEPCL 247
           S C+G+C + CK P+Q F KN +G+P+ MEP+FND SC+  FG  PP  E+D  +K+PC 
Sbjct: 202 SNCVGMCTHICKIPSQIFIKNSLGMPIYMEPDFNDLSCKMMFGREPPEIEDDPAMKQPCF 254

[Close]

BLAST of Cp4.1LG17g07480.1 vs. NCBI nr
Match: gi|449436415|ref|XP_004135988.1| (PREDICTED: beta-carotene isomerase D27, chloroplastic [Cucumis sativus])

HSP 1 Score: 467.2 bits (1201), Expect = 1.9e-128
Identity = 234/268 (87.31%), Postives = 247/268 (92.16%), Query Frame = 1


Query: 1   MKPVALLLHPPATISSAALRF-SSKSHLRKRPLNISCFAVQSESTKVEVSSKPEYKPGML 60
           MKPVALLLHPP TIS A LRF SSKSHLR RP  +SC A+QS S K   SSK EYKPG+L
Sbjct: 1   MKPVALLLHPP-TISPAPLRFTSSKSHLRNRPFILSCSALQSGSIKDGASSKAEYKPGIL 60

Query: 61  DDFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPL 120
           DDFFLN+FRSKMVQEVGWDSEKPGYDGLIEVA+RLTM GK+NS+TIEASVRILIALFPPL
Sbjct: 61  DDFFLNVFRSKMVQEVGWDSEKPGYDGLIEVASRLTMTGKTNSETIEASVRILIALFPPL 120

Query: 121 LLELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCK 180
           LL+LYR+LVSPIAGGKVAAIMVARVTA TCQWLMGTCTVNSIELPDGSSCQSGVFVEKCK
Sbjct: 121 LLKLYRILVSPIAGGKVAAIMVARVTALTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCK 180

Query: 181 YLEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILK 240
           YLEESKCIGIC+NTCK PTQSFFK+QMGIPLLMEPNF DYSCQFKFGVLPPLPEEDSILK
Sbjct: 181 YLEESKCIGICINTCKLPTQSFFKDQMGIPLLMEPNFTDYSCQFKFGVLPPLPEEDSILK 240

Query: 241 EPCLEICPHATRRREVLSKMSATQCPKA 268
           EPCLEICP+ATRRREV  K+SA QCPKA
Sbjct: 241 EPCLEICPNATRRREVSGKISAAQCPKA 267

[Close]

BLAST of Cp4.1LG17g07480.1 vs. NCBI nr
Match: gi|659101188|ref|XP_008451473.1| (PREDICTED: beta-carotene isomerase D27, chloroplastic [Cucumis melo])

HSP 1 Score: 466.1 bits (1198), Expect = 4.2e-128
Identity = 233/268 (86.94%), Postives = 247/268 (92.16%), Query Frame = 1


Query: 1   MKPVALLLHPPATISSAALRF-SSKSHLRKRPLNISCFAVQSESTKVEVSSKPEYKPGML 60
           MKP+ALLLHPP TISSA LRF SSKSHLR RP  +SC A+QS S K   SSK EYKPG+L
Sbjct: 1   MKPLALLLHPP-TISSAPLRFNSSKSHLRNRPFILSCSALQSGSIKDGTSSKSEYKPGIL 60

Query: 61  DDFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPL 120
           DDFFLN+FRSKMVQEVGWDSEKPGY GLIEVA+RLTM G++NS+TIEASVRIL ALFPPL
Sbjct: 61  DDFFLNVFRSKMVQEVGWDSEKPGYGGLIEVASRLTMTGRTNSETIEASVRILTALFPPL 120

Query: 121 LLELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCK 180
           LL+LYR+LVSPIAGGKVAAIMVARVTA TCQWLMGTCTVNSIELPDGSSCQSGVFVEKCK
Sbjct: 121 LLKLYRILVSPIAGGKVAAIMVARVTALTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCK 180

Query: 181 YLEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILK 240
           YLEESKCIGIC+NTCK PTQSFFK+QMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILK
Sbjct: 181 YLEESKCIGICINTCKLPTQSFFKDQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILK 240

Query: 241 EPCLEICPHATRRREVLSKMSATQCPKA 268
           EPCLEICP+ATRRREV  KMSA QCPKA
Sbjct: 241 EPCLEICPNATRRREVSGKMSAAQCPKA 267

[Close]

BLAST of Cp4.1LG17g07480.1 vs. NCBI nr
Match: gi|720038383|ref|XP_010267970.1| (PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X2 [Nelumbo nucifera])

HSP 1 Score: 369.4 bits (947), Expect = 5.3e-99
Identity = 179/268 (66.79%), Postives = 219/268 (81.72%), Query Frame = 1


Query: 1   MKPVAL-LLHPPATISSAALRFSSKSHLRKRPLNISCFAVQSESTKV-EVSSKPEYKPGM 60
           M+P+AL  L   +  S  +LR  SKS L+    ++    +QS++T+      K EYKPG+
Sbjct: 1   MRPLALPRLLTFSFPSQCSLR--SKSRLKSPGFSVLSSPIQSQATEATNTDLKSEYKPGI 60

Query: 61  LDDFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPP 120
            D+ FL LFR+KMVQEVGWDSEKPGYDGLIEVANRL M G+SN++T EA+VRIL +LFPP
Sbjct: 61  FDNLFLALFRNKMVQEVGWDSEKPGYDGLIEVANRLMMNGRSNAETAEAAVRILRSLFPP 120

Query: 121 LLLELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKC 180
            LLEL++ML++PI GGKVA++MVARVTA +CQWLMG+CTVNS++LPDGSSC +GVFVE+C
Sbjct: 121 FLLELFKMLIAPIDGGKVASMMVARVTALSCQWLMGSCTVNSVDLPDGSSCTTGVFVERC 180

Query: 181 KYLEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSIL 240
           KYLEESKCIGIC+NTCK PTQ+FFK+ MG+PLLMEPNF+DYSCQFKFGV PPLP ED  L
Sbjct: 181 KYLEESKCIGICINTCKLPTQAFFKDYMGVPLLMEPNFSDYSCQFKFGVSPPLPTEDKTL 240

Query: 241 KEPCLEICPHATRRREVLSKMSATQCPK 267
           KEPCL+ICP+ATRRR++L K    QCPK
Sbjct: 241 KEPCLDICPNATRRRQILEKCETVQCPK 266

[Close]

BLAST of Cp4.1LG17g07480.1 vs. NCBI nr
Match: gi|255548419|ref|XP_002515266.1| (PREDICTED: beta-carotene isomerase D27, chloroplastic [Ricinus communis])

HSP 1 Score: 368.6 bits (945), Expect = 9.1e-99
Identity = 183/268 (68.28%), Postives = 214/268 (79.85%), Query Frame = 1


Query: 1   MKPVALLLHPPATISSAALRFSSKSHLRKRPLNISCFAVQSESTKVE-VSSKPEYKPGML 60
           MKP+ALL   P +IS +         L  R   ISC ++QSE  K E V ++ EYKPG  
Sbjct: 20  MKPLALLR--PLSISVSPPSRLKLPRLFNRSFRISCSSLQSEPEKTEDVGTRSEYKPGFF 79

Query: 61  DDFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPL 120
           DDFFL LFR+KMV EVGWDSEK GYDGLIEVANRL + G SN+DT +A+VRIL +LFPPL
Sbjct: 80  DDFFLTLFRNKMVAEVGWDSEKAGYDGLIEVANRLMLTGTSNADTRDAAVRILRSLFPPL 139

Query: 121 LLELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCK 180
           LL+LY++L+SP+  GKVAAIMVARVTA TCQWLMGTCTVNSI+LPDGSSC+SGVFVE+CK
Sbjct: 140 LLDLYKLLISPLGEGKVAAIMVARVTAITCQWLMGTCTVNSIDLPDGSSCESGVFVERCK 199

Query: 181 YLEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILK 240
           YLEESKC+GIC+NTCK PTQ+FFK+ MG+PLLMEPNF DYSCQFKFGVLPP PE+DS LK
Sbjct: 200 YLEESKCVGICVNTCKLPTQAFFKDYMGVPLLMEPNFTDYSCQFKFGVLPPQPEDDSTLK 259

Query: 241 EPCLEICPHATRRREVLSKMSATQCPKA 268
           EPCLE CP A+RR+     ++   CPKA
Sbjct: 260 EPCLEACPIASRRQ---VSLNIAHCPKA 282

[Close]

BLAST of Cp4.1LG17g07480.1 vs. NCBI nr
Match: gi|1009148017|ref|XP_015891720.1| (PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Ziziphus jujuba])

HSP 1 Score: 367.5 bits (942), Expect = 2.0e-98
Identity = 184/274 (67.15%), Postives = 217/274 (79.20%), Query Frame = 1


Query: 1   MKPVALLLHPPATISSAALRFSSKSHLRKRPLNISCFAVQSESTKVEVSSKPE------- 60
           MKP+A+L   P TIS+ A   +  S  ++R + +  F V S ST      +PE       
Sbjct: 1   MKPMAVLR--PPTISTCAPYPNLPSQTKRRRIKLPGFRVLSSSTSPPEPIRPESKASQLE 60

Query: 61  -YKPGMLDDFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRIL 120
            YKPG+LDD FLNLFRSKMV+EVGWDS KPGYDGLIEVA+RL MK K+NSDT +A+VRIL
Sbjct: 61  EYKPGVLDDLFLNLFRSKMVKEVGWDSNKPGYDGLIEVASRLIMKNKNNSDTQDAAVRIL 120

Query: 121 IALFPPLLLELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSG 180
            +LFPP LLELY+ML++PIA GKVA++MVARVTA TCQWLMG CTVNS++LPDG+S  SG
Sbjct: 121 RSLFPPFLLELYKMLIAPIAEGKVASLMVARVTAVTCQWLMGRCTVNSVDLPDGASWSSG 180

Query: 181 VFVEKCKYLEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLP 240
           VFVEKCKYL+ESKC+GIC+NTCK PTQSFF + MG+PLLMEPNF+DYSCQFKFGVLPP P
Sbjct: 181 VFVEKCKYLKESKCVGICVNTCKLPTQSFFNDYMGVPLLMEPNFSDYSCQFKFGVLPPQP 240

Query: 241 EEDSILKEPCLEICPHATRRREVLSKMSATQCPK 267
           E+DS LKEPCLE+CPHA  RREV S M+  QC K
Sbjct: 241 EDDSALKEPCLELCPHAAHRREV-SGMNVEQCQK 271

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g07480.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
D27_ARATH	1.3e-28	32.51	Beta-carotene isomerase D27, chloroplastic OS=Arabidopsis thaliana GN=D27 PE=1 S...	[more]
D27_ORYSJ	3.6e-23	29.38	Beta-carotene isomerase D27, chloroplastic OS=Oryza sativa subsp. japonica GN=D2...	[more]

BLAST of Cp4.1LG17g07480.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9J2_CUCSA	1.3e-128	87.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G407750 PE=4 SV=1	[more]
B9RNC7_RICCO	6.3e-99	68.28	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1346590 PE=4 SV=1	[more]
A0A059AY03_EUCGR	2.0e-97	64.55	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01003 PE=4 SV=1	[more]
W9QMD1_9ROSA	2.7e-97	78.44	Uncharacterized protein OS=Morus notabilis GN=L484_009732 PE=4 SV=1	[more]
A0A151SMV1_CAJCA	1.3e-96	68.42	Uncharacterized protein OS=Cajanus cajan GN=KK1_002403 PE=4 SV=1	[more]

BLAST of Cp4.1LG17g07480.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G01995.1	5.3e-81	57.74	unknown protein	[more]
AT1G64680.1	6.4e-34	34.36	unknown protein	[more]
AT1G03055.1	7.3e-30	32.51	unknown protein	[more]

BLAST of Cp4.1LG17g07480.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449436415\|ref\|XP_004135988.1\|	1.9e-128	87.31	PREDICTED: beta-carotene isomerase D27, chloroplastic [Cucumis sativus]	[more]
gi\|659101188\|ref\|XP_008451473.1\|	4.2e-128	86.94	PREDICTED: beta-carotene isomerase D27, chloroplastic [Cucumis melo]	[more]
gi\|720038383\|ref\|XP_010267970.1\|	5.3e-99	66.79	PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X2 [Nelumbo nucife...	[more]
gi\|255548419\|ref\|XP_002515266.1\|	9.1e-99	68.28	PREDICTED: beta-carotene isomerase D27, chloroplastic [Ricinus communis]	[more]
gi\|1009148017\|ref\|XP_015891720.1\|	2.0e-98	67.15	PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Ziziphus jujub...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR025114	DUF4033

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG17g07480	Cp4.1LG17g07480	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG17g07480.1	Cp4.1LG17g07480.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG17g07480.1:five_prime_utr:001	Cp4.1LG17g07480.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG17g07480.1:cds:001	Cp4.1LG17g07480.1:cds:001	CDS
Cp4.1LG17g07480.1:cds:002	Cp4.1LG17g07480.1:cds:002	CDS
Cp4.1LG17g07480.1:cds:003	Cp4.1LG17g07480.1:cds:003	CDS
Cp4.1LG17g07480.1:cds:004	Cp4.1LG17g07480.1:cds:004	CDS
Cp4.1LG17g07480.1:cds:005	Cp4.1LG17g07480.1:cds:005	CDS
Cp4.1LG17g07480.1:cds:006	Cp4.1LG17g07480.1:cds:006	CDS
Cp4.1LG17g07480.1:cds:007	Cp4.1LG17g07480.1:cds:007	CDS
Cp4.1LG17g07480.1:cds:008	Cp4.1LG17g07480.1:cds:008	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG17g07480.1:three_prime_utr:001	Cp4.1LG17g07480.1:three_prime_utr:001	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025114	Domain of unknown function DUF4033	PFAM	PF13225	DUF4033	coord: 151..232 score: 2.1
None	No IPR available	PANTHER	PTHR33591	FAMILY NOT NAMED	coord: 11..267 score: 1.4E
None	No IPR available	PANTHER	PTHR33591:SF2	SUBFAMILY NOT NAMED	coord: 11..267 score: 1.4E