Cp4.1LG17g07480 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG17g07480
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionD27 family protein, putative
LocationCp4.1LG17 : 5900950 .. 5904007 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTTATAGTTTAGTTAGTTATCAAAGGAATATTTATCTAATTGCCCTCGCAAAATTGGGATATTCGTTCTAAAAGCCCAAAACAGTGAAGCGTTTCGGTTGTGTGTGGAAAGTGAAAATGAAGCCAGTGGCTCTTCTTCTTCATCCTCCAGCCACCATCTCTTCAGCTGCTCTTCGTTTCTCCTCCAAATCCCACCTTCGAAAGCGTCCCTTAAACATCTCCTGCTTCGCTGTTCAATCTGAATCGGTAGGGTTTCAATCTTCCCCTCGCCGTTTTTGAATTCAATCGACTTTTTCTTATCTTCATTGTATTTGAATCAATCCATAGACAAAGGTTGAAGTATCTTCAAAGCCCGAATACAAGCCTGGAATGCTCGACGATTTCTTCCTCAACCTCTTCCGAAGCAAAATGGTTCAGGTTGTTTAATTTCACACTTCACTTTCGTTGTTATCACCAATCGAGTTTCTGAGAAAGCAAGTAGTTGAAGTTAATTCTTTAATGTGTGTTTTGACTGCAGGAAGTCGGCTGGGATTCTGAAAAACCTGGATATGATGGACTAATCGAAGTCGCTAACAGGCTCACGATGAAGGGCAAATCCAATTCCGATACCATAGAAGCGTCGGTATTTCTTTTTTAAGAACAATTTGTAGATACAGAACAGAACATCTAAGTTTTTTGTACTCCTTGAACATTTGATTGTAGCTGAAATTGTAATCGCGAGTTAGGTTCGTAGATTTCATTATGGAAATTTGGTTATGGCTGCAGGTTCGAATTTTAATAGCTTTGTTTCCTCCTCTTCTATTGGAACTTTATCGGATGCTGGTATCACCTATAGCTGGTGGCAAAGTGGCTGCGATTATGGTCGGTGAGTTGAGCCCTTCAATCTTTATCTGTATCTAGAATTTGGATATTGTTCCTTTTTATTTGGGAATCAATTACTTTTCATTTGTTTGACTTTGATCCATCTGGTGTAAGATTTTGAAGATTAGTTGAACTGTTCTTCTCTTTTTTTCTTTTTCCTCTGTGTTGAAAGCAAGGGTGACTGCGTTTACTTGTCAATGGCTAATGGGAACTTGTACTGTAAATTCAATTGAATTACCTGATGGATCGTCTTGCCAAAGTGGGGTATGAATTATTGATTACCATGTTCATGAATTTCCGTGGGAGTTGCTGAGATTTTGGATTTTTTAAACATCAATTCAATATTTAAAGCTTACTGATGCAGGTTTTCGTTGAAAAATGCAAGTACTTAGAAGAAAGTAAATGCATAGGAATTTGTCTCAACACTTGCAAGTTTCCTACTCAGGTTTGTTCTTGCCAACCTATATATATCAAGCTCTTTCTTTACATTACTGGTAATTTGGGAACGTCTTGTTCGTTCGAGTCTCTTGATTCTGCACACACTATTCATTTGACTTGACTCGAACAAATCTCGACAACCTTGATTGTGATGTAGAGCTTCTTCAAGAACCAGATGGGAATTCCTCTATTAATGGAGCCAAACTTCAATGACTATAGTTGTCAGGTAATTCTATCACTTAACATTTCTGTTCCACTGTTGGGTAGCTTTGTGGGTAGAACGGATAAGTCCTATTACATGATATTGTTTGTATCGATCTCCTGGAATGTTTGGATCCAAAGTATTGTGACTTGATTGAAATGAAGTTACTGAATTTAGTGTGATTCTCCTTTTAACCTTGACGAACACTGCTATTGACATCTAGACTCTAGTTCTATGAAGATATCATTAGCCAGATTCCCAATTGAATTGAATCAAATAAATCCATAGTTTGGAAATGGTTTTGGGATTAGTGTATGGGACGTGTAGTGTGTTGAAGATTGTTAGGAGGGAGTCCCACGTTGGCTAATTTAAAGAATGATTATGAGTTTATAAGTAAGGAATACATCTACATTAGCATGAGGCCTTTTGGAGAAGCCCAAAGCAAAGCCATGACAGCTTAGGCTCAAAGTAGGACAATATCGTCCCATTGTTATGCTCAAAGTGGATTGTTAAGGTGAGGCTGTTCGAGGGCTACATAGACCTCAGGGAGGATTGTTCGGAGGGAGTCCCACATTGACTAATTTAGGAAATGATCATAGGTTCATAAGTAAGGAATACATCTCCCCTTTAGACTCTAGCTCTATGAAGATGTCATTAGCCACTTATTGAATTGAACCAAATAAATCCATAGTTTGGAAATGCTTTTGGCTTTTGGGACTAGTGTATGGAACTTGTTGTGGCTGTCACTTTCTGTAATTTTGATCAAAGGGCGGTTTAACTTAGCAGAATTGGGAGTGAAATATGCATCCTAGCGTCAACCACAATAGTTTGATTTGTCCATTTTAAGTATAAGCTCTTGTGGCTTTGCTTTTGGTTTTGGTTTCCCCAAAAAGGCCTTGTACCAACGAAAATGTATTCCTGATTTGTCCATTTTAAGTATAAGCTCTTGTGGCTTTGCTTTTGGTTTTGGTTTCCCCAAAAGGCCTTGTACCAACGAAAATGTATTCCTTACTTATAAACTCACGATCACCCCTTAATTAGTCGATGTGAGACTCCTCTCCCAACAATCTTCGCACAACCCACCTGTTTAATGATACCCATATCAGCACCTTGTATGAATCTAATCAACTTCACTTTCCTTTTTTTTCTTCCTTGTGGGGCAACCGAATGTCAAAGTTCAAATTTGGTGTTCTTCCTCCTCTGCCTGAAGAAGACAGCATACTGAAAGAGCCTTGCTTGGAGATATGTCCTCATGCCACAAGAAGAAGAGAAGTTTTGAGTAAGATGAGTGCAACGCAGTGCCCTAAAGCATAGACCGAGCAGCCTATGACGAGCTTGGGATGGTGCTGAATGAGCTGGGATTGCTTGCTAACCGATTGCCTTCCACATCTCTGAATTTTCTTGTACTAAAAAAAAAAAAAAAATTATGAGTTTATTTATTTGAAGGCTTCAAATAATCTCCAAACTTTTGAAAAGTTTATAAACTTTTTCAATTTTATGTCACTAAACTTTAAAAAAATAGTTAATAATAGGTTCTTAAACTCTCAATTTTATGTC

mRNA sequence

AGTTATAGTTTAGTTAGTTATCAAAGGAATATTTATCTAATTGCCCTCGCAAAATTGGGATATTCGTTCTAAAAGCCCAAAACAGTGAAGCGTTTCGGTTGTGTGTGGAAAGTGAAAATGAAGCCAGTGGCTCTTCTTCTTCATCCTCCAGCCACCATCTCTTCAGCTGCTCTTCGTTTCTCCTCCAAATCCCACCTTCGAAAGCGTCCCTTAAACATCTCCTGCTTCGCTGTTCAATCTGAATCGACAAAGGTTGAAGTATCTTCAAAGCCCGAATACAAGCCTGGAATGCTCGACGATTTCTTCCTCAACCTCTTCCGAAGCAAAATGGTTCAGGAAGTCGGCTGGGATTCTGAAAAACCTGGATATGATGGACTAATCGAAGTCGCTAACAGGCTCACGATGAAGGGCAAATCCAATTCCGATACCATAGAAGCGTCGGTTCGAATTTTAATAGCTTTGTTTCCTCCTCTTCTATTGGAACTTTATCGGATGCTGGTATCACCTATAGCTGGTGGCAAAGTGGCTGCGATTATGGTCGCAAGGGTGACTGCGTTTACTTGTCAATGGCTAATGGGAACTTGTACTGTAAATTCAATTGAATTACCTGATGGATCGTCTTGCCAAAGTGGGGTTTTCGTTGAAAAATGCAAGTACTTAGAAGAAAGTAAATGCATAGGAATTTGTCTCAACACTTGCAAGTTTCCTACTCAGAGCTTCTTCAAGAACCAGATGGGAATTCCTCTATTAATGGAGCCAAACTTCAATGACTATAGTTGTCAGTTCAAATTTGGTGTTCTTCCTCCTCTGCCTGAAGAAGACAGCATACTGAAAGAGCCTTGCTTGGAGATATGTCCTCATGCCACAAGAAGAAGAGAAGTTTTGAGTAAGATGAGTGCAACGCAGTGCCCTAAAGCATAGACCGAGCAGCCTATGACGAGCTTGGGATGGTGCTGAATGAGCTGGGATTGCTTGCTAACCGATTGCCTTCCACATCTCTGAATTTTCTTGTACTAAAAAAAAAAAAAAAATTATGAGTTTATTTATTTGAAGGCTTCAAATAATCTCCAAACTTTTGAAAAGTTTATAAACTTTTTCAATTTTATGTCACTAAACTTTAAAAAAATAGTTAATAATAGGTTCTTAAACTCTCAATTTTATGTC

Coding sequence (CDS)

ATGAAGCCAGTGGCTCTTCTTCTTCATCCTCCAGCCACCATCTCTTCAGCTGCTCTTCGTTTCTCCTCCAAATCCCACCTTCGAAAGCGTCCCTTAAACATCTCCTGCTTCGCTGTTCAATCTGAATCGACAAAGGTTGAAGTATCTTCAAAGCCCGAATACAAGCCTGGAATGCTCGACGATTTCTTCCTCAACCTCTTCCGAAGCAAAATGGTTCAGGAAGTCGGCTGGGATTCTGAAAAACCTGGATATGATGGACTAATCGAAGTCGCTAACAGGCTCACGATGAAGGGCAAATCCAATTCCGATACCATAGAAGCGTCGGTTCGAATTTTAATAGCTTTGTTTCCTCCTCTTCTATTGGAACTTTATCGGATGCTGGTATCACCTATAGCTGGTGGCAAAGTGGCTGCGATTATGGTCGCAAGGGTGACTGCGTTTACTTGTCAATGGCTAATGGGAACTTGTACTGTAAATTCAATTGAATTACCTGATGGATCGTCTTGCCAAAGTGGGGTTTTCGTTGAAAAATGCAAGTACTTAGAAGAAAGTAAATGCATAGGAATTTGTCTCAACACTTGCAAGTTTCCTACTCAGAGCTTCTTCAAGAACCAGATGGGAATTCCTCTATTAATGGAGCCAAACTTCAATGACTATAGTTGTCAGTTCAAATTTGGTGTTCTTCCTCCTCTGCCTGAAGAAGACAGCATACTGAAAGAGCCTTGCTTGGAGATATGTCCTCATGCCACAAGAAGAAGAGAAGTTTTGAGTAAGATGAGTGCAACGCAGTGCCCTAAAGCATAG

Protein sequence

MKPVALLLHPPATISSAALRFSSKSHLRKRPLNISCFAVQSESTKVEVSSKPEYKPGMLDDFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPLLLELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKYLEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILKEPCLEICPHATRRREVLSKMSATQCPKA
Homology
[Close]
BLAST of Cp4.1LG17g07480 vs. Swiss-Prot
Match: D27_ARATH (Beta-carotene isomerase D27, chloroplastic OS=Arabidopsis thaliana GN=D27 PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.3e-28
Identity = 79/243 (32.51%), Postives = 126/243 (51.85%), Query Frame = 1 

Query: 13  TISSAALRFSSKSHLRKRPLNISCFAVQSESTKVEVSSKPEYKPGMLDDFFLNL---FRS 72
           T S    R S    L  +P+         E+ ++E S+       + D FF  +   + S
Sbjct: 22  TRSGLDRRSSISPTLCSKPVYSGKLKAAKETARIETSNTKN--ASIEDSFFSKIAINYLS 81

Query: 73  KMVQE---VGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIAL---FPPLLLEL 132
           K +Q+   +   S+   YD L++ A R++     N DT +    +L +L    P ++  L
Sbjct: 82  KNLQDAAGISSSSKSTDYDRLVDTATRVSR----NFDTKQQHEFVLSSLDRALPTVISSL 141

Query: 133 YRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKYLEE 192
            +M   P    KV+  + A  T  +  WL+G   V   E+ +G   +S V++EKC++LE+
Sbjct: 142 IKMAFPP---SKVSRELFALFTTISFAWLVGPSEVRETEV-NGRKEKSVVYIEKCRFLEQ 201

Query: 193 SKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILKEPCL 247
           S C+G+C + CK P+Q F KN +G+P+ MEP+FND SC+  FG  PP  E+D  +K+PC 
Sbjct: 202 SNCVGMCTHICKIPSQIFIKNSLGMPIYMEPDFNDLSCKMMFGREPPEIEDDPAMKQPCF 254

[Close]
BLAST of Cp4.1LG17g07480 vs. Swiss-Prot
Match: D27_ORYSJ (Beta-carotene isomerase D27, chloroplastic OS=Oryza sativa subsp. japonica GN=D27 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.6e-23
Identity = 62/211 (29.38%), Postives = 105/211 (49.76%), Query Frame = 1 

Query: 38  AVQSESTKVEVSSKPE---YKPGMLDDFFLNLFRSKMVQEVGWDSEKPGYDGLIEVA--- 97
           A    + + E ++ P    Y+    D   +      + +  G  +EK GY+ LI+ A   
Sbjct: 61  AAMMSTVQTETAAAPPATVYRDSWFDKLAIGYLSRNLQEASGLKNEKDGYESLIDAALAI 120

Query: 98  NRLTMKGKSNSDTIEASVRILIALFPPLLLELYRMLVSPIAGGKVAAIMVARVTAFTCQW 157
           +R+    K +    +A  R L    P  +L + ++++ P    + +    A  T     W
Sbjct: 121 SRIFSLDKQSEIVTQALERAL----PSYILTMIKVMMPP---SRFSREYFAAFTTIFFPW 180

Query: 158 LMGTCTVNSIELPDGSSCQSGVFVEKCKYLEESKCIGICLNTCKFPTQSFFKNQMGIPLL 217
           L+G C V   E+ +G   ++ V++ KC++LE + C+G+C N CK P Q F ++ +G+ + 
Sbjct: 181 LVGPCEVMESEV-EGRKEKNVVYIPKCRFLESTNCVGMCTNLCKIPCQKFIQDSLGMKVY 240

Query: 218 MEPNFNDYSCQFKFGVLPPLPEEDSILKEPC 243
           M PNF D SC+  FG  P  PE+D  LK+PC
Sbjct: 241 MSPNFEDMSCEMIFGQQP--PEDDPALKQPC 261

[Close]
BLAST of Cp4.1LG17g07480 vs. TrEMBL
Match: A0A0A0K9J2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G407750 PE=4 SV=1)

HSP 1 Score: 467.2 bits (1201), Expect = 1.3e-128
Identity = 234/268 (87.31%), Postives = 247/268 (92.16%), Query Frame = 1 

Query: 1   MKPVALLLHPPATISSAALRF-SSKSHLRKRPLNISCFAVQSESTKVEVSSKPEYKPGML 60
           MKPVALLLHPP TIS A LRF SSKSHLR RP  +SC A+QS S K   SSK EYKPG+L
Sbjct: 1   MKPVALLLHPP-TISPAPLRFTSSKSHLRNRPFILSCSALQSGSIKDGASSKAEYKPGIL 60

Query: 61  DDFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPL 120
           DDFFLN+FRSKMVQEVGWDSEKPGYDGLIEVA+RLTM GK+NS+TIEASVRILIALFPPL
Sbjct: 61  DDFFLNVFRSKMVQEVGWDSEKPGYDGLIEVASRLTMTGKTNSETIEASVRILIALFPPL 120

Query: 121 LLELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCK 180
           LL+LYR+LVSPIAGGKVAAIMVARVTA TCQWLMGTCTVNSIELPDGSSCQSGVFVEKCK
Sbjct: 121 LLKLYRILVSPIAGGKVAAIMVARVTALTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCK 180

Query: 181 YLEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILK 240
           YLEESKCIGIC+NTCK PTQSFFK+QMGIPLLMEPNF DYSCQFKFGVLPPLPEEDSILK
Sbjct: 181 YLEESKCIGICINTCKLPTQSFFKDQMGIPLLMEPNFTDYSCQFKFGVLPPLPEEDSILK 240

Query: 241 EPCLEICPHATRRREVLSKMSATQCPKA 268
           EPCLEICP+ATRRREV  K+SA QCPKA
Sbjct: 241 EPCLEICPNATRRREVSGKISAAQCPKA 267

[Close]
BLAST of Cp4.1LG17g07480 vs. TrEMBL
Match: B9RNC7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1346590 PE=4 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 6.3e-99
Identity = 183/268 (68.28%), Postives = 214/268 (79.85%), Query Frame = 1 

Query: 1   MKPVALLLHPPATISSAALRFSSKSHLRKRPLNISCFAVQSESTKVE-VSSKPEYKPGML 60
           MKP+ALL   P +IS +         L  R   ISC ++QSE  K E V ++ EYKPG  
Sbjct: 20  MKPLALLR--PLSISVSPPSRLKLPRLFNRSFRISCSSLQSEPEKTEDVGTRSEYKPGFF 79

Query: 61  DDFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPL 120
           DDFFL LFR+KMV EVGWDSEK GYDGLIEVANRL + G SN+DT +A+VRIL +LFPPL
Sbjct: 80  DDFFLTLFRNKMVAEVGWDSEKAGYDGLIEVANRLMLTGTSNADTRDAAVRILRSLFPPL 139

Query: 121 LLELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCK 180
           LL+LY++L+SP+  GKVAAIMVARVTA TCQWLMGTCTVNSI+LPDGSSC+SGVFVE+CK
Sbjct: 140 LLDLYKLLISPLGEGKVAAIMVARVTAITCQWLMGTCTVNSIDLPDGSSCESGVFVERCK 199

Query: 181 YLEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILK 240
           YLEESKC+GIC+NTCK PTQ+FFK+ MG+PLLMEPNF DYSCQFKFGVLPP PE+DS LK
Sbjct: 200 YLEESKCVGICVNTCKLPTQAFFKDYMGVPLLMEPNFTDYSCQFKFGVLPPQPEDDSTLK 259

Query: 241 EPCLEICPHATRRREVLSKMSATQCPKA 268
           EPCLE CP A+RR+     ++   CPKA
Sbjct: 260 EPCLEACPIASRRQ---VSLNIAHCPKA 282

[Close]
BLAST of Cp4.1LG17g07480 vs. TrEMBL
Match: A0A059AY03_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01003 PE=4 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 2.0e-97
Identity = 173/268 (64.55%), Postives = 213/268 (79.48%), Query Frame = 1 

Query: 1   MKPVALLLHPPATISSAALRFSSKSHLRKRPLNISCFAVQSESTKVE-VSSKPEYKPGML 60
           MKP+ L    P+ + ++      +   R  P   + F++ S++   +  + + EYKPG+ 
Sbjct: 20  MKPLVL----PSPLPTSPFSLRHRPPRRASPRFPTRFSLHSKTIAADDAAPRAEYKPGVF 79

Query: 61  DDFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPL 120
           DD FLNLFRSKMV+EVGWDSEKPGYDGLIEVA+RL MKG SNSDT +A++RIL +LFPP 
Sbjct: 80  DDLFLNLFRSKMVKEVGWDSEKPGYDGLIEVAHRLMMKGSSNSDTRDAAIRILRSLFPPF 139

Query: 121 LLELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCK 180
           LLELY++L++PI  GK+AA+MVARVTA TCQWLMG CTVNS++L DG+SCQSGVFVE+CK
Sbjct: 140 LLELYQLLIAPIGEGKLAAVMVARVTALTCQWLMGKCTVNSVDLLDGTSCQSGVFVERCK 199

Query: 181 YLEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILK 240
           YLEESKC+GIC+NTCK PTQSFFK+ MG+PLLMEPNF DYSCQFKFG+ PP P+ED+ LK
Sbjct: 200 YLEESKCVGICVNTCKLPTQSFFKDYMGVPLLMEPNFEDYSCQFKFGIHPPQPQEDAALK 259

Query: 241 EPCLEICPHATRRREVLSKMSATQCPKA 268
           EPCLEICP+A RRREV+      QCPKA
Sbjct: 260 EPCLEICPNAIRRREVVQNTELAQCPKA 283

[Close]
BLAST of Cp4.1LG17g07480 vs. TrEMBL
Match: W9QMD1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009732 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 2.7e-97
Identity = 171/218 (78.44%), Postives = 193/218 (88.53%), Query Frame = 1 

Query: 51  KPEYKPGMLDDFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVR 110
           K EYKPG+ DD FLNLFR KMVQEVGWDS+K GY GLIEVAN L MK KSNS+T EA+VR
Sbjct: 56  KLEYKPGVFDDLFLNLFRDKMVQEVGWDSDKAGYGGLIEVANHLVMKSKSNSNTTEAAVR 115

Query: 111 ILIALFPPLLLELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQ 170
           IL +LFPP LLELY+MLV+P+AGGKVAA+MVARVTA TCQWLMG CTVNS++LPDG+SC 
Sbjct: 116 ILRSLFPPWLLELYKMLVAPLAGGKVAAVMVARVTALTCQWLMGRCTVNSVDLPDGTSCA 175

Query: 171 SGVFVEKCKYLEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPP 230
           SGVFVEKCKYLEESKC+GIC+NTC+ PTQSFFK+ MG+PLLMEPNF DYSCQFKFGV PP
Sbjct: 176 SGVFVEKCKYLEESKCVGICINTCRLPTQSFFKDYMGVPLLMEPNFTDYSCQFKFGVNPP 235

Query: 231 LPEEDSILKEPCLEICPHATRRREVLSKMSATQ-CPKA 268
           LP+ D+ILKEPCLEICP+ATRRRE+ S  +A Q CPKA
Sbjct: 236 LPQYDAILKEPCLEICPNATRRRELASNRTADQRCPKA 273

[Close]
BLAST of Cp4.1LG17g07480 vs. TrEMBL
Match: A0A151SMV1_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_002403 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 1.3e-96
Identity = 169/247 (68.42%), Postives = 198/247 (80.16%), Query Frame = 1 

Query: 25  SHLRKRPLNISCFAVQSESTKVE-----VSSKPEYKPGMLDDFFLNLFRSKMVQEVGWDS 84
           S +R     +S  +  S  +K        ++KPEYKPG+ DD FLNLFRSK+VQEVGWDS
Sbjct: 20  SSVRNHRFRVSFSSTSSPGSKTVEQVGIAAAKPEYKPGVFDDLFLNLFRSKLVQEVGWDS 79

Query: 85  EKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPLLLELYRMLVSPIAGGKVAAI 144
           +KPGYDGLIEVAN L  KG +NSDT+E +VRIL +LFPP LLELY+ML++PI GGK+AA+
Sbjct: 80  KKPGYDGLIEVANLLMKKGTTNSDTVETTVRILRSLFPPYLLELYKMLIAPIGGGKIAAM 139

Query: 145 MVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKYLEESKCIGICLNTCKFPTQ 204
           MVARVT  TCQWLMG C VNSI+LPDG+SC SGV+VE+CKYLEESKC GIC NTCKFPTQ
Sbjct: 140 MVARVTVLTCQWLMGPCKVNSIDLPDGTSCSSGVYVERCKYLEESKCAGICTNTCKFPTQ 199

Query: 205 SFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILKEPCLEICPHATRRREVLSKM 264
           +FFK+ MG+PLLMEPNF DYSCQFKFGVLPPLPE+DSILKEPCLE CP+A+ RR     +
Sbjct: 200 TFFKDHMGVPLLMEPNFADYSCQFKFGVLPPLPEDDSILKEPCLEACPNASLRRMAARNI 259

Query: 265 SATQCPK 267
             T CPK
Sbjct: 260 DVTACPK 266

[Close]
BLAST of Cp4.1LG17g07480 vs. TAIR10
Match: AT4G01995.1 (AT4G01995.1 unknown protein)

HSP 1 Score: 298.1 bits (762), Expect = 5.3e-81
Identity = 153/265 (57.74%), Postives = 194/265 (73.21%), Query Frame = 1 

Query: 4   VALLLHPPATISSAALRFSSKSHLRKRPLNISCFAVQSESTKV-EVSSKPEYKPGMLDDF 63
           + +LL PP TI  +   FS+K  L +R   + C    S   K  E + K EYKPG LDDF
Sbjct: 5   IQVLLPPPTTIVFSN-SFSTKLILTRR---LRCRISNSSEVKSDEGAPKLEYKPGPLDDF 64

Query: 64  FLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPLLLE 123
           F+  FR+K+V+EVG DSEKPGY GLIE+   L +KG++ S+T +A+VRIL +LFPPL+LE
Sbjct: 65  FMQSFRNKLVEEVGSDSEKPGYVGLIELVKLLLLKGRTRSETSDAAVRILKSLFPPLILE 124

Query: 124 LYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKYLE 183
           LY++L++PIA GK+AA+MVARVT  TCQWLMG   VN I+LP+G S  SGVFVEKC+YLE
Sbjct: 125 LYKLLIAPIAQGKLAALMVARVTVLTCQWLMGPSKVNIIDLPNGESWDSGVFVEKCQYLE 184

Query: 184 ESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILKEPC 243
           ESKC+G+C+NTCK PTQ+FFK+ MG+PL+MEPNF DYSCQFKFGV P  PE+D  + EPC
Sbjct: 185 ESKCVGVCINTCKLPTQTFFKDYMGVPLVMEPNFKDYSCQFKFGVAP--PEDDGNVNEPC 244

Query: 244 LEICPHATRRREVLSKMSATQCPKA 268
            E C  A RR     K+ + +CP A
Sbjct: 245 FETCSIAGRR-----KLKSGECPLA 258

[Close]
BLAST of Cp4.1LG17g07480 vs. TAIR10
Match: AT1G64680.1 (AT1G64680.1 unknown protein)

HSP 1 Score: 141.7 bits (356), Expect = 6.4e-34
Identity = 89/259 (34.36%), Postives = 136/259 (52.51%), Query Frame = 1 

Query: 17  AALRFSSKSHLRKRPLNISCFAVQSESTKVEVSSKPEYKPGMLDDFFLNLFRSKMVQ--- 76
           AA+      +L  R  +  C   +       +  K  Y+ G+++  F+ LF  KM +   
Sbjct: 2   AAIASLQAVNLTFRRRSTRCGIAEPSGEPAPMGLKTRYEDGLVERVFMGLFARKMDKFGS 61

Query: 77  EVGWDSEKPG-----YDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPLLLELYRMLV 136
           +   D+++ G     Y+  +EV+ R+ M+G+S     EA   +L+++ PP   E +R L 
Sbjct: 62  KKKKDTKEKGFWEYDYESFVEVSKRV-MQGRSRVQQQEAVREVLLSMLPPGAPEQFRKLF 121

Query: 137 SPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKYLEESKCIG 196
            P    K AA   A +T     WL+G   V  +E+ +G   +SGV ++KC+YLE S C+G
Sbjct: 122 PPT---KWAAEFNAALTVPFFHWLVGPSQVIEVEV-NGVKQRSGVRIKKCRYLENSGCVG 181

Query: 197 ICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILKEPCL-EICP 256
           +C+N CK PTQ FF N+ G+PL M PN+ D SC+  +G  PP  EED   K+PCL +IC 
Sbjct: 182 MCVNMCKIPTQDFFTNEFGLPLTMNPNYEDMSCEMIYGQAPPAFEEDVATKQPCLADICS 241

Query: 257 HATRRREVLSKMSATQCPK 267
                   +S  S+  CPK
Sbjct: 242 --------MSNPSSPICPK 247

[Close]
BLAST of Cp4.1LG17g07480 vs. TAIR10
Match: AT1G03055.1 (AT1G03055.1 unknown protein)

HSP 1 Score: 128.3 bits (321), Expect = 7.3e-30
Identity = 79/243 (32.51%), Postives = 126/243 (51.85%), Query Frame = 1 

Query: 13  TISSAALRFSSKSHLRKRPLNISCFAVQSESTKVEVSSKPEYKPGMLDDFFLNL---FRS 72
           T S    R S    L  +P+         E+ ++E S+       + D FF  +   + S
Sbjct: 22  TRSGLDRRSSISPTLCSKPVYSGKLKAAKETARIETSNTKN--ASIEDSFFSKIAINYLS 81

Query: 73  KMVQE---VGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIAL---FPPLLLEL 132
           K +Q+   +   S+   YD L++ A R++     N DT +    +L +L    P ++  L
Sbjct: 82  KNLQDAAGISSSSKSTDYDRLVDTATRVSR----NFDTKQQHEFVLSSLDRALPTVISSL 141

Query: 133 YRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKYLEE 192
            +M   P    KV+  + A  T  +  WL+G   V   E+ +G   +S V++EKC++LE+
Sbjct: 142 IKMAFPP---SKVSRELFALFTTISFAWLVGPSEVRETEV-NGRKEKSVVYIEKCRFLEQ 201

Query: 193 SKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILKEPCL 247
           S C+G+C + CK P+Q F KN +G+P+ MEP+FND SC+  FG  PP  E+D  +K+PC 
Sbjct: 202 SNCVGMCTHICKIPSQIFIKNSLGMPIYMEPDFNDLSCKMMFGREPPEIEDDPAMKQPCF 254

[Close]
BLAST of Cp4.1LG17g07480 vs. NCBI nr
Match: gi|449436415|ref|XP_004135988.1| (PREDICTED: beta-carotene isomerase D27, chloroplastic [Cucumis sativus])

HSP 1 Score: 467.2 bits (1201), Expect = 1.9e-128
Identity = 234/268 (87.31%), Postives = 247/268 (92.16%), Query Frame = 1 

Query: 1   MKPVALLLHPPATISSAALRF-SSKSHLRKRPLNISCFAVQSESTKVEVSSKPEYKPGML 60
           MKPVALLLHPP TIS A LRF SSKSHLR RP  +SC A+QS S K   SSK EYKPG+L
Sbjct: 1   MKPVALLLHPP-TISPAPLRFTSSKSHLRNRPFILSCSALQSGSIKDGASSKAEYKPGIL 60

Query: 61  DDFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPL 120
           DDFFLN+FRSKMVQEVGWDSEKPGYDGLIEVA+RLTM GK+NS+TIEASVRILIALFPPL
Sbjct: 61  DDFFLNVFRSKMVQEVGWDSEKPGYDGLIEVASRLTMTGKTNSETIEASVRILIALFPPL 120

Query: 121 LLELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCK 180
           LL+LYR+LVSPIAGGKVAAIMVARVTA TCQWLMGTCTVNSIELPDGSSCQSGVFVEKCK
Sbjct: 121 LLKLYRILVSPIAGGKVAAIMVARVTALTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCK 180

Query: 181 YLEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILK 240
           YLEESKCIGIC+NTCK PTQSFFK+QMGIPLLMEPNF DYSCQFKFGVLPPLPEEDSILK
Sbjct: 181 YLEESKCIGICINTCKLPTQSFFKDQMGIPLLMEPNFTDYSCQFKFGVLPPLPEEDSILK 240

Query: 241 EPCLEICPHATRRREVLSKMSATQCPKA 268
           EPCLEICP+ATRRREV  K+SA QCPKA
Sbjct: 241 EPCLEICPNATRRREVSGKISAAQCPKA 267

[Close]
BLAST of Cp4.1LG17g07480 vs. NCBI nr
Match: gi|659101188|ref|XP_008451473.1| (PREDICTED: beta-carotene isomerase D27, chloroplastic [Cucumis melo])

HSP 1 Score: 466.1 bits (1198), Expect = 4.2e-128
Identity = 233/268 (86.94%), Postives = 247/268 (92.16%), Query Frame = 1 

Query: 1   MKPVALLLHPPATISSAALRF-SSKSHLRKRPLNISCFAVQSESTKVEVSSKPEYKPGML 60
           MKP+ALLLHPP TISSA LRF SSKSHLR RP  +SC A+QS S K   SSK EYKPG+L
Sbjct: 1   MKPLALLLHPP-TISSAPLRFNSSKSHLRNRPFILSCSALQSGSIKDGTSSKSEYKPGIL 60

Query: 61  DDFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPL 120
           DDFFLN+FRSKMVQEVGWDSEKPGY GLIEVA+RLTM G++NS+TIEASVRIL ALFPPL
Sbjct: 61  DDFFLNVFRSKMVQEVGWDSEKPGYGGLIEVASRLTMTGRTNSETIEASVRILTALFPPL 120

Query: 121 LLELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCK 180
           LL+LYR+LVSPIAGGKVAAIMVARVTA TCQWLMGTCTVNSIELPDGSSCQSGVFVEKCK
Sbjct: 121 LLKLYRILVSPIAGGKVAAIMVARVTALTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCK 180

Query: 181 YLEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILK 240
           YLEESKCIGIC+NTCK PTQSFFK+QMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILK
Sbjct: 181 YLEESKCIGICINTCKLPTQSFFKDQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILK 240

Query: 241 EPCLEICPHATRRREVLSKMSATQCPKA 268
           EPCLEICP+ATRRREV  KMSA QCPKA
Sbjct: 241 EPCLEICPNATRRREVSGKMSAAQCPKA 267

[Close]
BLAST of Cp4.1LG17g07480 vs. NCBI nr
Match: gi|720038383|ref|XP_010267970.1| (PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X2 [Nelumbo nucifera])

HSP 1 Score: 369.4 bits (947), Expect = 5.3e-99
Identity = 179/268 (66.79%), Postives = 219/268 (81.72%), Query Frame = 1 

Query: 1   MKPVAL-LLHPPATISSAALRFSSKSHLRKRPLNISCFAVQSESTKV-EVSSKPEYKPGM 60
           M+P+AL  L   +  S  +LR  SKS L+    ++    +QS++T+      K EYKPG+
Sbjct: 1   MRPLALPRLLTFSFPSQCSLR--SKSRLKSPGFSVLSSPIQSQATEATNTDLKSEYKPGI 60

Query: 61  LDDFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPP 120
            D+ FL LFR+KMVQEVGWDSEKPGYDGLIEVANRL M G+SN++T EA+VRIL +LFPP
Sbjct: 61  FDNLFLALFRNKMVQEVGWDSEKPGYDGLIEVANRLMMNGRSNAETAEAAVRILRSLFPP 120

Query: 121 LLLELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKC 180
            LLEL++ML++PI GGKVA++MVARVTA +CQWLMG+CTVNS++LPDGSSC +GVFVE+C
Sbjct: 121 FLLELFKMLIAPIDGGKVASMMVARVTALSCQWLMGSCTVNSVDLPDGSSCTTGVFVERC 180

Query: 181 KYLEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSIL 240
           KYLEESKCIGIC+NTCK PTQ+FFK+ MG+PLLMEPNF+DYSCQFKFGV PPLP ED  L
Sbjct: 181 KYLEESKCIGICINTCKLPTQAFFKDYMGVPLLMEPNFSDYSCQFKFGVSPPLPTEDKTL 240

Query: 241 KEPCLEICPHATRRREVLSKMSATQCPK 267
           KEPCL+ICP+ATRRR++L K    QCPK
Sbjct: 241 KEPCLDICPNATRRRQILEKCETVQCPK 266

[Close]
BLAST of Cp4.1LG17g07480 vs. NCBI nr
Match: gi|255548419|ref|XP_002515266.1| (PREDICTED: beta-carotene isomerase D27, chloroplastic [Ricinus communis])

HSP 1 Score: 368.6 bits (945), Expect = 9.1e-99
Identity = 183/268 (68.28%), Postives = 214/268 (79.85%), Query Frame = 1 

Query: 1   MKPVALLLHPPATISSAALRFSSKSHLRKRPLNISCFAVQSESTKVE-VSSKPEYKPGML 60
           MKP+ALL   P +IS +         L  R   ISC ++QSE  K E V ++ EYKPG  
Sbjct: 20  MKPLALLR--PLSISVSPPSRLKLPRLFNRSFRISCSSLQSEPEKTEDVGTRSEYKPGFF 79

Query: 61  DDFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPL 120
           DDFFL LFR+KMV EVGWDSEK GYDGLIEVANRL + G SN+DT +A+VRIL +LFPPL
Sbjct: 80  DDFFLTLFRNKMVAEVGWDSEKAGYDGLIEVANRLMLTGTSNADTRDAAVRILRSLFPPL 139

Query: 121 LLELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCK 180
           LL+LY++L+SP+  GKVAAIMVARVTA TCQWLMGTCTVNSI+LPDGSSC+SGVFVE+CK
Sbjct: 140 LLDLYKLLISPLGEGKVAAIMVARVTAITCQWLMGTCTVNSIDLPDGSSCESGVFVERCK 199

Query: 181 YLEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILK 240
           YLEESKC+GIC+NTCK PTQ+FFK+ MG+PLLMEPNF DYSCQFKFGVLPP PE+DS LK
Sbjct: 200 YLEESKCVGICVNTCKLPTQAFFKDYMGVPLLMEPNFTDYSCQFKFGVLPPQPEDDSTLK 259

Query: 241 EPCLEICPHATRRREVLSKMSATQCPKA 268
           EPCLE CP A+RR+     ++   CPKA
Sbjct: 260 EPCLEACPIASRRQ---VSLNIAHCPKA 282

[Close]
BLAST of Cp4.1LG17g07480 vs. NCBI nr
Match: gi|1009148017|ref|XP_015891720.1| (PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Ziziphus jujuba])

HSP 1 Score: 367.5 bits (942), Expect = 2.0e-98
Identity = 184/274 (67.15%), Postives = 217/274 (79.20%), Query Frame = 1 

Query: 1   MKPVALLLHPPATISSAALRFSSKSHLRKRPLNISCFAVQSESTKVEVSSKPE------- 60
           MKP+A+L   P TIS+ A   +  S  ++R + +  F V S ST      +PE       
Sbjct: 1   MKPMAVLR--PPTISTCAPYPNLPSQTKRRRIKLPGFRVLSSSTSPPEPIRPESKASQLE 60

Query: 61  -YKPGMLDDFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRIL 120
            YKPG+LDD FLNLFRSKMV+EVGWDS KPGYDGLIEVA+RL MK K+NSDT +A+VRIL
Sbjct: 61  EYKPGVLDDLFLNLFRSKMVKEVGWDSNKPGYDGLIEVASRLIMKNKNNSDTQDAAVRIL 120

Query: 121 IALFPPLLLELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSG 180
            +LFPP LLELY+ML++PIA GKVA++MVARVTA TCQWLMG CTVNS++LPDG+S  SG
Sbjct: 121 RSLFPPFLLELYKMLIAPIAEGKVASLMVARVTAVTCQWLMGRCTVNSVDLPDGASWSSG 180

Query: 181 VFVEKCKYLEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLP 240
           VFVEKCKYL+ESKC+GIC+NTCK PTQSFF + MG+PLLMEPNF+DYSCQFKFGVLPP P
Sbjct: 181 VFVEKCKYLKESKCVGICVNTCKLPTQSFFNDYMGVPLLMEPNFSDYSCQFKFGVLPPQP 240

Query: 241 EEDSILKEPCLEICPHATRRREVLSKMSATQCPK 267
           E+DS LKEPCLE+CPHA  RREV S M+  QC K
Sbjct: 241 EDDSALKEPCLELCPHAAHRREV-SGMNVEQCQK 271

The following BLAST results are available for this feature:
BLAST of Cp4.1LG17g07480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
D27_ARATH1.3e-2832.51Beta-carotene isomerase D27, chloroplastic OS=Arabidopsis thaliana GN=D27 PE=1 S... [more]
D27_ORYSJ3.6e-2329.38Beta-carotene isomerase D27, chloroplastic OS=Oryza sativa subsp. japonica GN=D2... [more]
BLAST of Cp4.1LG17g07480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9J2_CUCSA1.3e-12887.31Uncharacterized protein OS=Cucumis sativus GN=Csa_7G407750 PE=4 SV=1[more]
B9RNC7_RICCO6.3e-9968.28Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1346590 PE=4 SV=1[more]
A0A059AY03_EUCGR2.0e-9764.55Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01003 PE=4 SV=1[more]
W9QMD1_9ROSA2.7e-9778.44Uncharacterized protein OS=Morus notabilis GN=L484_009732 PE=4 SV=1[more]
A0A151SMV1_CAJCA1.3e-9668.42Uncharacterized protein OS=Cajanus cajan GN=KK1_002403 PE=4 SV=1[more]
BLAST of Cp4.1LG17g07480 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G01995.15.3e-8157.74 unknown protein[more]
AT1G64680.16.4e-3434.36 unknown protein[more]
AT1G03055.17.3e-3032.51 unknown protein[more]
BLAST of Cp4.1LG17g07480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449436415|ref|XP_004135988.1|1.9e-12887.31PREDICTED: beta-carotene isomerase D27, chloroplastic [Cucumis sativus][more]
gi|659101188|ref|XP_008451473.1|4.2e-12886.94PREDICTED: beta-carotene isomerase D27, chloroplastic [Cucumis melo][more]
gi|720038383|ref|XP_010267970.1|5.3e-9966.79PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X2 [Nelumbo nucife... [more]
gi|255548419|ref|XP_002515266.1|9.1e-9968.28PREDICTED: beta-carotene isomerase D27, chloroplastic [Ricinus communis][more]
gi|1009148017|ref|XP_015891720.1|2.0e-9867.15PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Ziziphus jujub... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR025114DUF4033
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006270 DNA replication initiation
biological_process GO:0010182 sugar mediated signaling pathway
biological_process GO:0006268 DNA unwinding involved in DNA replication
biological_process GO:0051567 histone H3-K9 methylation
biological_process GO:0006306 DNA methylation
biological_process GO:0006342 chromatin silencing
biological_process GO:0008283 cell proliferation
cellular_component GO:0005575 cellular_component
cellular_component GO:0005737 cytoplasm
cellular_component GO:0042555 MCM complex
cellular_component GO:0005657 replication fork
cellular_component GO:0000347 THO complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003678 DNA helicase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g07480.1Cp4.1LG17g07480.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025114Domain of unknown function DUF4033PFAMPF13225DUF4033coord: 151..232
score: 2.1
NoneNo IPR availablePANTHERPTHR33591FAMILY NOT NAMEDcoord: 11..267
score: 1.4E
NoneNo IPR availablePANTHERPTHR33591:SF2SUBFAMILY NOT NAMEDcoord: 11..267
score: 1.4E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG17g07480CmaCh08G004720Cucurbita maxima (Rimu)cmacpeB917
Cp4.1LG17g07480ClCG09G005020Watermelon (Charleston Gray)cpewcgB280
Cp4.1LG17g07480Carg13384Silver-seed gourdcarcpeB0632
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG17g07480Wax gourdcpewgoB0376
Cp4.1LG17g07480Wax gourdcpewgoB0414
Cp4.1LG17g07480Cucurbita pepo (Zucchini)cpecpeB157
Cp4.1LG17g07480Cucurbita pepo (Zucchini)cpecpeB332
Cp4.1LG17g07480Cucurbita pepo (Zucchini)cpecpeB336
Cp4.1LG17g07480Cucumber (Gy14) v1cgycpeB0580
Cp4.1LG17g07480Cucurbita maxima (Rimu)cmacpeB269
Cp4.1LG17g07480Cucurbita maxima (Rimu)cmacpeB376
Cp4.1LG17g07480Cucurbita maxima (Rimu)cmacpeB472
Cp4.1LG17g07480Cucurbita moschata (Rifu)cmocpeB232
Cp4.1LG17g07480Cucurbita moschata (Rifu)cmocpeB339
Cp4.1LG17g07480Cucurbita moschata (Rifu)cmocpeB430
Cp4.1LG17g07480Cucurbita moschata (Rifu)cmocpeB853
Cp4.1LG17g07480Wild cucumber (PI 183967)cpecpiB344
Cp4.1LG17g07480Cucumber (Chinese Long) v2cpecuB343
Cp4.1LG17g07480Bottle gourd (USVL1VR-Ls)cpelsiB262
Cp4.1LG17g07480Bottle gourd (USVL1VR-Ls)cpelsiB266
Cp4.1LG17g07480Watermelon (Charleston Gray)cpewcgB290
Cp4.1LG17g07480Watermelon (97103) v1cpewmB311
Cp4.1LG17g07480Watermelon (97103) v1cpewmB322
Cp4.1LG17g07480Melon (DHL92) v3.5.1cpemeB293
Cp4.1LG17g07480Cucumber (Gy14) v2cgybcpeB931
Cp4.1LG17g07480Melon (DHL92) v3.6.1cpemedB341
Cp4.1LG17g07480Silver-seed gourdcarcpeB0161
Cp4.1LG17g07480Silver-seed gourdcarcpeB1071
Cp4.1LG17g07480Silver-seed gourdcarcpeB1145
Cp4.1LG17g07480Cucumber (Chinese Long) v3cpecucB0422