Cp4.1LG17g07420.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG17g07420.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	CP12
Location	Cp4.1LG17 : 5912115 .. 5912492 (-)
Sequence length	378

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCGATTTCCGGCACGACGGTGGCAGCCTTAAAAGCGGTGGCTGACTCGCAGAAACCCGAATCGCCGGTCCTCCGATTCACCCGGCTCAGCTACAAGTGGAAGCGGTGGACTGCCGGTCGGATTAGTGTAGTTGGACCGGTGGCGGCCGCCCCGGACCGGATATCGGAGAAGGTGGTGGAGAGCATAAAGAACGCGGAGGAGACGTGCTCGGATGATCCAGAGAGTGGGGAGTGTGCGGCGGCGTGGGATGAGGTGGAGGAGCTCAGCGCCGCCGCTAGCCACGCACGTGACCGGCTGAAGGATGCGGACCCACTCGAGGAGTTCTGTAAGGATAATCCCGAGACGGAGGAGTGTCGCACGTACGAGGACTAA

mRNA sequence

ATGGCAGCGATTTCCGGCACGACGGTGGCAGCCTTAAAAGCGGTGGCTGACTCGCAGAAACCCGAATCGCCGGTCCTCCGATTCACCCGGCTCAGCTACAAGTGGAAGCGGTGGACTGCCGGTCGGATTAGTGTAGTTGGACCGGTGGCGGCCGCCCCGGACCGGATATCGGAGAAGGTGGTGGAGAGCATAAAGAACGCGGAGGAGACGTGCTCGGATGATCCAGAGAGTGGGGAGTGTGCGGCGGCGTGGGATGAGGTGGAGGAGCTCAGCGCCGCCGCTAGCCACGCACGTGACCGGCTGAAGGATGCGGACCCACTCGAGGAGTTCTGTAAGGATAATCCCGAGACGGAGGAGTGTCGCACGTACGAGGACTAA

Coding sequence (CDS)

ATGGCAGCGATTTCCGGCACGACGGTGGCAGCCTTAAAAGCGGTGGCTGACTCGCAGAAACCCGAATCGCCGGTCCTCCGATTCACCCGGCTCAGCTACAAGTGGAAGCGGTGGACTGCCGGTCGGATTAGTGTAGTTGGACCGGTGGCGGCCGCCCCGGACCGGATATCGGAGAAGGTGGTGGAGAGCATAAAGAACGCGGAGGAGACGTGCTCGGATGATCCAGAGAGTGGGGAGTGTGCGGCGGCGTGGGATGAGGTGGAGGAGCTCAGCGCCGCCGCTAGCCACGCACGTGACCGGCTGAAGGATGCGGACCCACTCGAGGAGTTCTGTAAGGATAATCCCGAGACGGAGGAGTGTCGCACGTACGAGGACTAA

Protein sequence

MAAISGTTVAALKAVADSQKPESPVLRFTRLSYKWKRWTAGRISVVGPVAAAPDRISEKVVESIKNAEETCSDDPESGECAAAWDEVEELSAAASHARDRLKDADPLEEFCKDNPETEECRTYED

Homology

[Close]

BLAST of Cp4.1LG17g07420.1 vs. Swiss-Prot
Match: CP121_ARATH (Calvin cycle protein CP12-1, chloroplastic OS=Arabidopsis thaliana GN=CP12-1 PE=1 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.8e-26
Identity = 70/125 (56.00%), Postives = 88/125 (70.40%), Query Frame = 1


Query: 3   AISGTTVAALKAVADSQKPESPVLRFTRLSYKWKRWTAGRISVVGPVAAAPDRISEKVVE 62
           A +G  VA  + V    +P + VL   RL+Y WK  +  R+ VV   A +   ISEKV +
Sbjct: 5   AAAGLNVATPRVVV---RPVARVLGPVRLNYPWKFGSMKRMVVVK--ATSEGEISEKVEK 64

Query: 63  SIKNAEETCSDDPESGECAAAWDEVEELSAAASHARDRLK--DADPLEEFCKDNPETEEC 122
           SI+ A+ETC+DDP SGEC AAWDEVEELSAAASHARD+ K   +DPLEE+C DNPET+EC
Sbjct: 65  SIQEAKETCADDPVSGECVAAWDEVEELSAAASHARDKKKAGGSDPLEEYCNDNPETDEC 124

Query: 123 RTYED 126
           RTY++
Sbjct: 125 RTYDN 124

[Close]

BLAST of Cp4.1LG17g07420.1 vs. Swiss-Prot
Match: CP122_ARATH (Calvin cycle protein CP12-2, chloroplastic OS=Arabidopsis thaliana GN=CP12-2 PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 5.0e-23
Identity = 66/131 (50.38%), Postives = 85/131 (64.89%), Query Frame = 1


Query: 1   MAAIS-GTTVAALKAVADSQKPESPVLRFTRLSYKWKRW--TAGRISVVGPVAAAPDR-I 60
           MA I+ G  +A  +    S+     +     L+  W     T  R+  + P+ AAP+  I
Sbjct: 1   MATIATGLNIATQRVFVTSENRPVCLAGPVHLNNSWNLGSRTTNRMMKLQPIKAAPEGGI 60

Query: 61  SEKVVESIKNAEETCSDDPESGECAAAWDEVEELSAAASHARDRLK--DADPLEEFCKDN 120
           S+ V +SIK A+ETC+ DP SGEC AAWDEVEELSAAASHARD+ K   +DPLEE+CKDN
Sbjct: 61  SDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDKKKADGSDPLEEYCKDN 120

Query: 121 PETEECRTYED 126
           PET ECRTY++
Sbjct: 121 PETNECRTYDN 131

[Close]

BLAST of Cp4.1LG17g07420.1 vs. Swiss-Prot
Match: CP123_ARATH (Calvin cycle protein CP12-3, chloroplastic OS=Arabidopsis thaliana GN=CP12-3 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.7e-13
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 1


Query: 54  DRISEKVVESIKNAEETCSDDPESGECAAAWDEVEELSAAASHARDRLK--DADPLEEFC 113
           +++SE + E +K A E C  +  S EC  AWDEVEE+S A +  R +LK  + DPLE FC
Sbjct: 61  EKLSEMIEEKVKEATEVCEAEEMSEECRVAWDEVEEVSQARADLRIKLKLLNQDPLESFC 120

Query: 114 KDNPETEECRTYED 126
           ++NPET+ECR YED
Sbjct: 121 QENPETDECRIYED 134

[Close]

BLAST of Cp4.1LG17g07420.1 vs. Swiss-Prot
Match: CP12_CHLRE (Calvin cycle protein CP12, chloroplastic OS=Chlamydomonas reinhardtii GN=CP12 PE=1 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 2.3e-12
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 1


Query: 56  ISEKVVESIKNAEETCSDDPESGECAAAWDEVEELSAAASHARDRLKD----ADPLEEFC 115
           +++KV +++K AE+ C+    S +CA AWD VEELSAA SH +D +K      DPLE FC
Sbjct: 35  LNKKVQDAVKEAEDACAKGT-SADCAVAWDTVEELSAAVSHKKDAVKADVTLTDPLEAFC 94

Query: 116 KDNPETEECRTYED 126
           KD P+ +ECR YED
Sbjct: 95  KDAPDADECRVYED 107

[Close]

BLAST of Cp4.1LG17g07420.1 vs. TrEMBL
Match: A0A0A0K832_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G407670 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.4e-48
Identity = 102/125 (81.60%), Postives = 112/125 (89.60%), Query Frame = 1


Query: 1   MAAISGTTVAALKAVADSQKPESPVLRFTRLSYKWKRWTAGRISVVGPVAAAPDRISEKV 60
           MAAI+G+++AA KAV DS K E PVLR +RLSY WKRWT+GR+S VG VAAAPDRISEKV
Sbjct: 57  MAAITGSSMAASKAVTDSPKIELPVLRSSRLSYPWKRWTSGRMSAVGTVAAAPDRISEKV 116

Query: 61  VESIKNAEETCSDDPESGECAAAWDEVEELSAAASHARDRLKDADPLEEFCKDNPETEEC 120
           VESIKNAE TCS+DP SGECAAAWDEVEELSAAASHARDRL  +DPLE+FCKDNPETEEC
Sbjct: 117 VESIKNAEVTCSEDPASGECAAAWDEVEELSAAASHARDRLSHSDPLEDFCKDNPETEEC 176

Query: 121 RTYED 126
           RTYED
Sbjct: 177 RTYED 181

[Close]

BLAST of Cp4.1LG17g07420.1 vs. TrEMBL
Match: F6HPR1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02480 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.8e-33
Identity = 85/128 (66.41%), Postives = 97/128 (75.78%), Query Frame = 1


Query: 1   MAAISGTTVAALKAVADSQKPESPVLRFTRLSYKWKR---WTAGRISVVGPVAAAPDRIS 60
           +A +S +T   L   ADS  P+S  ++   LS  WKR   + AGR+ V  PVAAAPD IS
Sbjct: 73  IAGVSLSTPRVLARAADS--PKSQTIQSPWLSNPWKRPSRFGAGRMCV-RPVAAAPDSIS 132

Query: 61  EKVVESIKNAEETCSDDPESGECAAAWDEVEELSAAASHARDRLKDADPLEEFCKDNPET 120
           EKVVESIKNAEE CSDDP SGEC AAWDEVEELSAAASHARD+ K++DPLE +CKDNPE 
Sbjct: 133 EKVVESIKNAEEKCSDDPASGECVAAWDEVEELSAAASHARDKKKESDPLETYCKDNPED 192

Query: 121 EECRTYED 126
           EECRTYED
Sbjct: 193 EECRTYED 197

[Close]

BLAST of Cp4.1LG17g07420.1 vs. TrEMBL
Match: B7XB92_FAGCR (Chloroplast protein 12 OS=Fagus crenata GN=CP12 PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.1e-32
Identity = 79/130 (60.77%), Postives = 98/130 (75.38%), Query Frame = 1


Query: 1   MAAISGTTVAALKAVADS-QKPESPVLRFTRLSYKWKRWT----AGRISVVGPVAAAPDR 60
           MA I+G  ++  + +A S   P++  ++   LS+ WKR T    AGR   V PV+AAP++
Sbjct: 1   MATIAGLNLSTPRVLAKSADSPKAQTIKSPWLSHSWKRPTLFGYAGRSMQVRPVSAAPEK 60

Query: 61  ISEKVVESIKNAEETCSDDPESGECAAAWDEVEELSAAASHARDRLKDADPLEEFCKDNP 120
           IS+KV ESIK+AEE C+ DP SGEC AAWDEVEELSAAASHARD+ K +DPLEE+CKDNP
Sbjct: 61  ISDKVAESIKDAEEACAGDPASGECVAAWDEVEELSAAASHARDKKKGSDPLEEYCKDNP 120

Query: 121 ETEECRTYED 126
           ETEECRTYED
Sbjct: 121 ETEECRTYED 130

[Close]

BLAST of Cp4.1LG17g07420.1 vs. TrEMBL
Match: A0A0D2TDJ0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G122700 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.0e-30
Identity = 77/129 (59.69%), Postives = 95/129 (73.64%), Query Frame = 1


Query: 1   MAAISGTTVAALKAVAD--SQKPESPVLRFTRLSYKWKRWTAG--RISVVGPVAAAPDRI 60
           MA +S  ++ +L+AVA+    K   PV +   LS  WKR +    R+ V+ PV AAPD I
Sbjct: 1   MATLSSVSLVSLRAVANVRDSKKGGPV-KVATLSQPWKRVSQSQRRMQVMKPVRAAPDSI 60

Query: 61  SEKVVESIKNAEETCSDDPESGECAAAWDEVEELSAAASHARDRLKDADPLEEFCKDNPE 120
           SEKV +S+K A+E CSDDP SGEC AAWDEVEELSAAASHARD+ KD DPLE +CKDNPE
Sbjct: 61  SEKVEKSVKEAQEACSDDPASGECVAAWDEVEELSAAASHARDKKKDNDPLENYCKDNPE 120

Query: 121 TEECRTYED 126
           T+ECRTY++
Sbjct: 121 TDECRTYDN 128

[Close]

BLAST of Cp4.1LG17g07420.1 vs. TrEMBL
Match: A0A0D2T0A5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G139400 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.2e-30
Identity = 74/125 (59.20%), Postives = 92/125 (73.60%), Query Frame = 1


Query: 1   MAAISGTTVAALKAVADSQKPESPVLRFTRLSYKWKRWTAGRISVVGPVAAAPDRISEKV 60
           MA +S   +   + +A+   P+ P L+   L+  WKR +  ++ V GPV AAPD ISEKV
Sbjct: 1   MATLSSVNLVTPRTIANG--PDVPTLKVPCLNRPWKRVSPMKLRV-GPVRAAPDGISEKV 60

Query: 61  VESIKNAEETCSDDPESGECAAAWDEVEELSAAASHARDRLKDADPLEEFCKDNPETEEC 120
            +SIK A+E CSDDP SGEC AAWDEVEELSAAASHARD+ KD DPLE +CKDNPET+EC
Sbjct: 61  EKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDEC 120

Query: 121 RTYED 126
           RTY++
Sbjct: 121 RTYDN 122

[Close]

BLAST of Cp4.1LG17g07420.1 vs. TAIR10
Match: AT2G47400.1 (AT2G47400.1 CP12 domain-containing protein 1)

HSP 1 Score: 119.4 bits (298), Expect = 1.6e-27
Identity = 70/125 (56.00%), Postives = 88/125 (70.40%), Query Frame = 1


Query: 3   AISGTTVAALKAVADSQKPESPVLRFTRLSYKWKRWTAGRISVVGPVAAAPDRISEKVVE 62
           A +G  VA  + V    +P + VL   RL+Y WK  +  R+ VV   A +   ISEKV +
Sbjct: 5   AAAGLNVATPRVVV---RPVARVLGPVRLNYPWKFGSMKRMVVVK--ATSEGEISEKVEK 64

Query: 63  SIKNAEETCSDDPESGECAAAWDEVEELSAAASHARDRLK--DADPLEEFCKDNPETEEC 122
           SI+ A+ETC+DDP SGEC AAWDEVEELSAAASHARD+ K   +DPLEE+C DNPET+EC
Sbjct: 65  SIQEAKETCADDPVSGECVAAWDEVEELSAAASHARDKKKAGGSDPLEEYCNDNPETDEC 124

Query: 123 RTYED 126
           RTY++
Sbjct: 125 RTYDN 124

[Close]

BLAST of Cp4.1LG17g07420.1 vs. TAIR10
Match: AT3G62410.1 (AT3G62410.1 CP12 domain-containing protein 2)

HSP 1 Score: 108.6 bits (270), Expect = 2.8e-24
Identity = 66/131 (50.38%), Postives = 85/131 (64.89%), Query Frame = 1


Query: 1   MAAIS-GTTVAALKAVADSQKPESPVLRFTRLSYKWKRW--TAGRISVVGPVAAAPDR-I 60
           MA I+ G  +A  +    S+     +     L+  W     T  R+  + P+ AAP+  I
Sbjct: 1   MATIATGLNIATQRVFVTSENRPVCLAGPVHLNNSWNLGSRTTNRMMKLQPIKAAPEGGI 60

Query: 61  SEKVVESIKNAEETCSDDPESGECAAAWDEVEELSAAASHARDRLK--DADPLEEFCKDN 120
           S+ V +SIK A+ETC+ DP SGEC AAWDEVEELSAAASHARD+ K   +DPLEE+CKDN
Sbjct: 61  SDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDKKKADGSDPLEEYCKDN 120

Query: 121 PETEECRTYED 126
           PET ECRTY++
Sbjct: 121 PETNECRTYDN 131

[Close]

BLAST of Cp4.1LG17g07420.1 vs. TAIR10
Match: AT1G76560.1 (AT1G76560.1 CP12 domain-containing protein 3)

HSP 1 Score: 75.5 bits (184), Expect = 2.6e-14
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 1


Query: 54  DRISEKVVESIKNAEETCSDDPESGECAAAWDEVEELSAAASHARDRLK--DADPLEEFC 113
           +++SE + E +K A E C  +  S EC  AWDEVEE+S A +  R +LK  + DPLE FC
Sbjct: 61  EKLSEMIEEKVKEATEVCEAEEMSEECRVAWDEVEEVSQARADLRIKLKLLNQDPLESFC 120

Query: 114 KDNPETEECRTYED 126
           ++NPET+ECR YED
Sbjct: 121 QENPETDECRIYED 134

[Close]

BLAST of Cp4.1LG17g07420.1 vs. NCBI nr
Match: gi|659101204|ref|XP_008451482.1| (PREDICTED: calvin cycle protein CP12-1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 209.1 bits (531), Expect = 4.3e-51
Identity = 106/125 (84.80%), Postives = 115/125 (92.00%), Query Frame = 1


Query: 1   MAAISGTTVAALKAVADSQKPESPVLRFTRLSYKWKRWTAGRISVVGPVAAAPDRISEKV 60
           MAAI+G+++AA KAV DS K ESPV R +RLSY WKRWT+GR+S VGPVAAAPDRISEKV
Sbjct: 1   MAAITGSSMAATKAVTDSPKIESPVHRSSRLSYPWKRWTSGRMSAVGPVAAAPDRISEKV 60

Query: 61  VESIKNAEETCSDDPESGECAAAWDEVEELSAAASHARDRLKDADPLEEFCKDNPETEEC 120
           VESIKNAE TCS+DP SGECAAAWDEVEELSAAASHARDRLKDADPLE+FCKDNPETEEC
Sbjct: 61  VESIKNAEVTCSEDPASGECAAAWDEVEELSAAASHARDRLKDADPLEDFCKDNPETEEC 120

Query: 121 RTYED 126
           RTYED
Sbjct: 121 RTYED 125

[Close]

BLAST of Cp4.1LG17g07420.1 vs. NCBI nr
Match: gi|700189781|gb|KGN45014.1| (hypothetical protein Csa_7G407670 [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 2.0e-48
Identity = 102/125 (81.60%), Postives = 112/125 (89.60%), Query Frame = 1


Query: 1   MAAISGTTVAALKAVADSQKPESPVLRFTRLSYKWKRWTAGRISVVGPVAAAPDRISEKV 60
           MAAI+G+++AA KAV DS K E PVLR +RLSY WKRWT+GR+S VG VAAAPDRISEKV
Sbjct: 57  MAAITGSSMAASKAVTDSPKIELPVLRSSRLSYPWKRWTSGRMSAVGTVAAAPDRISEKV 116

Query: 61  VESIKNAEETCSDDPESGECAAAWDEVEELSAAASHARDRLKDADPLEEFCKDNPETEEC 120
           VESIKNAE TCS+DP SGECAAAWDEVEELSAAASHARDRL  +DPLE+FCKDNPETEEC
Sbjct: 117 VESIKNAEVTCSEDPASGECAAAWDEVEELSAAASHARDRLSHSDPLEDFCKDNPETEEC 176

Query: 121 RTYED 126
           RTYED
Sbjct: 177 RTYED 181

[Close]

BLAST of Cp4.1LG17g07420.1 vs. NCBI nr
Match: gi|778730422|ref|XP_004135995.2| (PREDICTED: calvin cycle protein CP12-1, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 9.3e-46
Identity = 97/117 (82.91%), Postives = 104/117 (88.89%), Query Frame = 1


Query: 9   VAALKAVADSQKPESPVLRFTRLSYKWKRWTAGRISVVGPVAAAPDRISEKVVESIKNAE 68
           +AA KAV DS K E PVLR +RLSY WKRWT+GR+S VG VAAAPDRISEKVVESIKNAE
Sbjct: 1   MAASKAVTDSPKIELPVLRSSRLSYPWKRWTSGRMSAVGTVAAAPDRISEKVVESIKNAE 60

Query: 69  ETCSDDPESGECAAAWDEVEELSAAASHARDRLKDADPLEEFCKDNPETEECRTYED 126
            TCS+DP SGECAAAWDEVEELSAAASHARDRL  +DPLE+FCKDNPETEECRTYED
Sbjct: 61  VTCSEDPASGECAAAWDEVEELSAAASHARDRLSHSDPLEDFCKDNPETEECRTYED 117

[Close]

BLAST of Cp4.1LG17g07420.1 vs. NCBI nr
Match: gi|225425676|ref|XP_002275043.1| (PREDICTED: calvin cycle protein CP12-1, chloroplastic [Vitis vinifera])

HSP 1 Score: 148.7 bits (374), Expect = 6.9e-33
Identity = 85/128 (66.41%), Postives = 97/128 (75.78%), Query Frame = 1


Query: 1   MAAISGTTVAALKAVADSQKPESPVLRFTRLSYKWKR---WTAGRISVVGPVAAAPDRIS 60
           +A +S +T   L   ADS  P+S  ++   LS  WKR   + AGR+ V  PVAAAPD IS
Sbjct: 4   IAGVSLSTPRVLARAADS--PKSQTIQSPWLSNPWKRPSRFGAGRMCV-RPVAAAPDSIS 63

Query: 61  EKVVESIKNAEETCSDDPESGECAAAWDEVEELSAAASHARDRLKDADPLEEFCKDNPET 120
           EKVVESIKNAEE CSDDP SGEC AAWDEVEELSAAASHARD+ K++DPLE +CKDNPE 
Sbjct: 64  EKVVESIKNAEEKCSDDPASGECVAAWDEVEELSAAASHARDKKKESDPLETYCKDNPED 123

Query: 121 EECRTYED 126
           EECRTYED
Sbjct: 124 EECRTYED 128

[Close]

BLAST of Cp4.1LG17g07420.1 vs. NCBI nr
Match: gi|747065799|ref|XP_011079555.1| (PREDICTED: calvin cycle protein CP12-1, chloroplastic-like [Sesamum indicum])

HSP 1 Score: 148.7 bits (374), Expect = 6.9e-33
Identity = 82/132 (62.12%), Postives = 102/132 (77.27%), Query Frame = 1


Query: 1   MAAISGTTVAALKAVA---DSQKPESPVLRFTRLSYKWKRWTA----GRISVVGPVAAAP 60
           MAA++G ++   K  A   DS KP +  ++F+ L+  WKR T     GR+  V PVAAAP
Sbjct: 1   MAAVAGVSITTPKVFAKLSDSSKPHA--VKFSLLNSPWKRCTTQFSHGRM-YVRPVAAAP 60

Query: 61  DRISEKVVESIKNAEETCSDDPESGECAAAWDEVEELSAAASHARDRLKDADPLEEFCKD 120
           D+IS+KV +SIKNA+E CSDDP SGECAAAWDEVEELSAAASHARD+ K++DPLE FCKD
Sbjct: 61  DQISDKVEQSIKNAQEACSDDPVSGECAAAWDEVEELSAAASHARDKQKESDPLENFCKD 120

Query: 121 NPETEECRTYED 126
           NPET+ECRTY++
Sbjct: 121 NPETDECRTYDN 129

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g07420.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CP121_ARATH	2.8e-26	56.00	Calvin cycle protein CP12-1, chloroplastic OS=Arabidopsis thaliana GN=CP12-1 PE=...	[more]
CP122_ARATH	5.0e-23	50.38	Calvin cycle protein CP12-2, chloroplastic OS=Arabidopsis thaliana GN=CP12-2 PE=...	[more]
CP123_ARATH	4.7e-13	51.35	Calvin cycle protein CP12-3, chloroplastic OS=Arabidopsis thaliana GN=CP12-3 PE=...	[more]
CP12_CHLRE	2.3e-12	51.35	Calvin cycle protein CP12, chloroplastic OS=Chlamydomonas reinhardtii GN=CP12 PE...	[more]

BLAST of Cp4.1LG17g07420.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K832_CUCSA	1.4e-48	81.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G407670 PE=4 SV=1	[more]
F6HPR1_VITVI	4.8e-33	66.41	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02480 PE=4 SV=...	[more]
B7XB92_FAGCR	1.1e-32	60.77	Chloroplast protein 12 OS=Fagus crenata GN=CP12 PE=2 SV=1	[more]
A0A0D2TDJ0_GOSRA	1.0e-30	59.69	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G122700 PE=4 SV=1	[more]
A0A0D2T0A5_GOSRA	2.2e-30	59.20	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G139400 PE=4 SV=1	[more]

BLAST of Cp4.1LG17g07420.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G47400.1	1.6e-27	56.00	CP12 domain-containing protein 1	[more]
AT3G62410.1	2.8e-24	50.38	CP12 domain-containing protein 2	[more]
AT1G76560.1	2.6e-14	51.35	CP12 domain-containing protein 3	[more]

BLAST of Cp4.1LG17g07420.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659101204\|ref\|XP_008451482.1\|	4.3e-51	84.80	PREDICTED: calvin cycle protein CP12-1, chloroplastic-like [Cucumis melo]	[more]
gi\|700189781\|gb\|KGN45014.1\|	2.0e-48	81.60	hypothetical protein Csa_7G407670 [Cucumis sativus]	[more]
gi\|778730422\|ref\|XP_004135995.2\|	9.3e-46	82.91	PREDICTED: calvin cycle protein CP12-1, chloroplastic-like [Cucumis sativus]	[more]
gi\|225425676\|ref\|XP_002275043.1\|	6.9e-33	66.41	PREDICTED: calvin cycle protein CP12-1, chloroplastic [Vitis vinifera]	[more]
gi\|747065799\|ref\|XP_011079555.1\|	6.9e-33	62.12	PREDICTED: calvin cycle protein CP12-1, chloroplastic-like [Sesamum indicum]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003823	DUF_CP12

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG17g07420	Cp4.1LG17g07420	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG17g07420.1:cds:001	Cp4.1LG17g07420.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG17g07420.1	Cp4.1LG17g07420.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003823	Domain of unknown function CP12	PFAM	PF02672	CP12	coord: 56..124 score: 3.1
IPR003823	Domain of unknown function CP12	SMART	SM01093	CP12_2	coord: 56..125 score: 4.1
None	No IPR available	PANTHER	PTHR33921	FAMILY NOT NAMED	coord: 2..125 score: 2.1
None	No IPR available	PANTHER	PTHR33921:SF2	CALVIN CYCLE PROTEIN CP12-1, CHLOROPLASTIC-RELATED	coord: 2..125 score: 2.1