Cp4.1LG17g06070.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG17g06070.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionAuxin-responsive protein
LocationCp4.1LG17 : 6875414 .. 6875617 (-)
Sequence length204
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTTTCTGATGACCGAGATCTCAACCTCCAAGCCACCGAGCTCCGCCTCGGCCTCCCTGGCTCCGACCAGCCCGACCGCCGCTGCGGATCGCAGCCTAACAAGAGACCCTTTTCAGAGATTGATAAGGAAAATGACAGCCGTGTCTCGGATGCCGAGAATGGCTCCGATCAGAGCTCGCAACCTCCTCCCTCCAAGTAA

mRNA sequence

ATGGCTGTTTCTGATGACCGAGATCTCAACCTCCAAGCCACCGAGCTCCGCCTCGGCCTCCCTGGCTCCGACCAGCCCGACCGCCGCTGCGGATCGCAGCCTAACAAGAGACCCTTTTCAGAGATTGATAAGGAAAATGACAGCCGTGTCTCGGATGCCGAGAATGGCTCCGATCAGAGCTCGCAACCTCCTCCCTCCAAGTAA

Coding sequence (CDS)

ATGGCTGTTTCTGATGACCGAGATCTCAACCTCCAAGCCACCGAGCTCCGCCTCGGCCTCCCTGGCTCCGACCAGCCCGACCGCCGCTGCGGATCGCAGCCTAACAAGAGACCCTTTTCAGAGATTGATAAGGAAAATGACAGCCGTGTCTCGGATGCCGAGAATGGCTCCGATCAGAGCTCGCAACCTCCTCCCTCCAAGTAA

Protein sequence

MAVSDDRDLNLQATELRLGLPGSDQPDRRCGSQPNKRPFSEIDKENDSRVSDAENGSDQSSQPPPSK
Homology
[Close]
BLAST of Cp4.1LG17g06070.1 vs. TrEMBL
Match: A0A0A0K770_CUCSA (Auxin-responsive protein OS=Cucumis sativus GN=Csa_7G378530 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 9.2e-15
Identity = 48/66 (72.73%), Postives = 52/66 (78.79%), Query Frame = 1 

Query: 2  AVSDDRDLNLQATELRLGLPGSDQPDRRCGSQPNKRPFSEIDKENDSRVSDAENGSDQSS 61
          A SD  DLN QATELRLGLPGSD  +RR  S+ NKRPFSEIDKEN+S VSD  N  DQ+S
Sbjct: 6  ASSDHPDLNFQATELRLGLPGSDDTNRRTESKSNKRPFSEIDKENNSSVSDVGNHIDQTS 65

Query: 62 QPPPSK 68
          QPPPSK
Sbjct: 66 QPPPSK 71

[Close]
BLAST of Cp4.1LG17g06070.1 vs. NCBI nr
Match: gi|659100794|ref|XP_008451269.1| (PREDICTED: auxin-induced protein 22D-like [Cucumis melo])

HSP 1 Score: 87.4 bits (215), Expect = 1.0e-14
Identity = 47/66 (71.21%), Postives = 54/66 (81.82%), Query Frame = 1 

Query: 2  AVSDDRDLNLQATELRLGLPGSDQPDRRCGSQPNKRPFSEIDKENDSRVSDAENGSDQSS 61
          A SD  DLN QATELRLGLPGSD+PDRR  S+ NKRPFSEIDKE++S +S+  N  DQ+S
Sbjct: 6  ASSDHPDLNFQATELRLGLPGSDEPDRRTESKSNKRPFSEIDKESNSSISNNGNCLDQTS 65

Query: 62 QPPPSK 68
          QPPPSK
Sbjct: 66 QPPPSK 71

[Close]
BLAST of Cp4.1LG17g06070.1 vs. NCBI nr
Match: gi|449458448|ref|XP_004146959.1| (PREDICTED: auxin-induced protein 22D-like [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 1.3e-14
Identity = 48/66 (72.73%), Postives = 52/66 (78.79%), Query Frame = 1 

Query: 2  AVSDDRDLNLQATELRLGLPGSDQPDRRCGSQPNKRPFSEIDKENDSRVSDAENGSDQSS 61
          A SD  DLN QATELRLGLPGSD  +RR  S+ NKRPFSEIDKEN+S VSD  N  DQ+S
Sbjct: 6  ASSDHPDLNFQATELRLGLPGSDDTNRRTESKSNKRPFSEIDKENNSSVSDVGNHIDQTS 65

Query: 62 QPPPSK 68
          QPPPSK
Sbjct: 66 QPPPSK 71

The following BLAST results are available for this feature:
BLAST of Cp4.1LG17g06070.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG17g06070.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K770_CUCSA9.2e-1572.73Auxin-responsive protein OS=Cucumis sativus GN=Csa_7G378530 PE=3 SV=1[more]
BLAST of Cp4.1LG17g06070.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG17g06070.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659100794|ref|XP_008451269.1|1.0e-1471.21PREDICTED: auxin-induced protein 22D-like [Cucumis melo][more]
gi|449458448|ref|XP_004146959.1|1.3e-1472.73PREDICTED: auxin-induced protein 22D-like [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0050794 regulation of cellular process
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG17g06070Cp4.1LG17g06070gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG17g06070.1:cds:001Cp4.1LG17g06070.1:cds:001CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG17g06070.1Cp4.1LG17g06070.1-proteinpolypeptide