Cp4.1LG17g06070 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG17g06070
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionAuxin-responsive protein
LocationCp4.1LG17 : 6875414 .. 6875617 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTTTCTGATGACCGAGATCTCAACCTCCAAGCCACCGAGCTCCGCCTCGGCCTCCCTGGCTCCGACCAGCCCGACCGCCGCTGCGGATCGCAGCCTAACAAGAGACCCTTTTCAGAGATTGATAAGGAAAATGACAGCCGTGTCTCGGATGCCGAGAATGGCTCCGATCAGAGCTCGCAACCTCCTCCCTCCAAGTAA

mRNA sequence

ATGGCTGTTTCTGATGACCGAGATCTCAACCTCCAAGCCACCGAGCTCCGCCTCGGCCTCCCTGGCTCCGACCAGCCCGACCGCCGCTGCGGATCGCAGCCTAACAAGAGACCCTTTTCAGAGATTGATAAGGAAAATGACAGCCGTGTCTCGGATGCCGAGAATGGCTCCGATCAGAGCTCGCAACCTCCTCCCTCCAAGTAA

Coding sequence (CDS)

ATGGCTGTTTCTGATGACCGAGATCTCAACCTCCAAGCCACCGAGCTCCGCCTCGGCCTCCCTGGCTCCGACCAGCCCGACCGCCGCTGCGGATCGCAGCCTAACAAGAGACCCTTTTCAGAGATTGATAAGGAAAATGACAGCCGTGTCTCGGATGCCGAGAATGGCTCCGATCAGAGCTCGCAACCTCCTCCCTCCAAGTAA

Protein sequence

MAVSDDRDLNLQATELRLGLPGSDQPDRRCGSQPNKRPFSEIDKENDSRVSDAENGSDQSSQPPPSK
Homology
[Close]
BLAST of Cp4.1LG17g06070 vs. TrEMBL
Match: A0A0A0K770_CUCSA (Auxin-responsive protein OS=Cucumis sativus GN=Csa_7G378530 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 9.2e-15
Identity = 48/66 (72.73%), Postives = 52/66 (78.79%), Query Frame = 1 

Query: 2  AVSDDRDLNLQATELRLGLPGSDQPDRRCGSQPNKRPFSEIDKENDSRVSDAENGSDQSS 61
          A SD  DLN QATELRLGLPGSD  +RR  S+ NKRPFSEIDKEN+S VSD  N  DQ+S
Sbjct: 6  ASSDHPDLNFQATELRLGLPGSDDTNRRTESKSNKRPFSEIDKENNSSVSDVGNHIDQTS 65

Query: 62 QPPPSK 68
          QPPPSK
Sbjct: 66 QPPPSK 71

[Close]
BLAST of Cp4.1LG17g06070 vs. NCBI nr
Match: gi|659100794|ref|XP_008451269.1| (PREDICTED: auxin-induced protein 22D-like [Cucumis melo])

HSP 1 Score: 87.4 bits (215), Expect = 1.0e-14
Identity = 47/66 (71.21%), Postives = 54/66 (81.82%), Query Frame = 1 

Query: 2  AVSDDRDLNLQATELRLGLPGSDQPDRRCGSQPNKRPFSEIDKENDSRVSDAENGSDQSS 61
          A SD  DLN QATELRLGLPGSD+PDRR  S+ NKRPFSEIDKE++S +S+  N  DQ+S
Sbjct: 6  ASSDHPDLNFQATELRLGLPGSDEPDRRTESKSNKRPFSEIDKESNSSISNNGNCLDQTS 65

Query: 62 QPPPSK 68
          QPPPSK
Sbjct: 66 QPPPSK 71

[Close]
BLAST of Cp4.1LG17g06070 vs. NCBI nr
Match: gi|449458448|ref|XP_004146959.1| (PREDICTED: auxin-induced protein 22D-like [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 1.3e-14
Identity = 48/66 (72.73%), Postives = 52/66 (78.79%), Query Frame = 1 

Query: 2  AVSDDRDLNLQATELRLGLPGSDQPDRRCGSQPNKRPFSEIDKENDSRVSDAENGSDQSS 61
          A SD  DLN QATELRLGLPGSD  +RR  S+ NKRPFSEIDKEN+S VSD  N  DQ+S
Sbjct: 6  ASSDHPDLNFQATELRLGLPGSDDTNRRTESKSNKRPFSEIDKENNSSVSDVGNHIDQTS 65

Query: 62 QPPPSK 68
          QPPPSK
Sbjct: 66 QPPPSK 71

The following BLAST results are available for this feature:
BLAST of Cp4.1LG17g06070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG17g06070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K770_CUCSA9.2e-1572.73Auxin-responsive protein OS=Cucumis sativus GN=Csa_7G378530 PE=3 SV=1[more]
BLAST of Cp4.1LG17g06070 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG17g06070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659100794|ref|XP_008451269.1|1.0e-1471.21PREDICTED: auxin-induced protein 22D-like [Cucumis melo][more]
gi|449458448|ref|XP_004146959.1|1.3e-1472.73PREDICTED: auxin-induced protein 22D-like [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0050794 regulation of cellular process
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0009734 auxin-activated signaling pathway
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g06070.1Cp4.1LG17g06070.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG17g06070Cucsa.388760Cucumber (Gy14) v1cgycpeB1031
Cp4.1LG17g06070CmaCh08G003040Cucurbita maxima (Rimu)cmacpeB917
Cp4.1LG17g06070CmoCh08G003010Cucurbita moschata (Rifu)cmocpeB853
Cp4.1LG17g06070Cla014808Watermelon (97103) v1cpewmB321
Cp4.1LG17g06070Csa7G378530Cucumber (Chinese Long) v2cpecuB342
Cp4.1LG17g06070ClCG09G007520Watermelon (Charleston Gray)cpewcgB289
Cp4.1LG17g06070CSPI07G15860Wild cucumber (PI 183967)cpecpiB343
Cp4.1LG17g06070Lsi02G022430Bottle gourd (USVL1VR-Ls)cpelsiB261
Cp4.1LG17g06070MELO3C015762.2Melon (DHL92) v3.6.1cpemedB348
Cp4.1LG17g06070CsaV3_7G027610Cucumber (Chinese Long) v3cpecucB0421
Cp4.1LG17g06070Bhi09G000921Wax gourdcpewgoB0426
Cp4.1LG17g06070CsGy7G014390Cucumber (Gy14) v2cgybcpeB930
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG17g06070Cp4.1LG12g11380Cucurbita pepo (Zucchini)cpecpeB176
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG17g06070Cucurbita pepo (Zucchini)cpecpeB157
Cp4.1LG17g06070Cucumber (Gy14) v1cgycpeB1032
Cp4.1LG17g06070Cucurbita maxima (Rimu)cmacpeB376
Cp4.1LG17g06070Cucurbita moschata (Rifu)cmocpeB339
Cp4.1LG17g06070Wild cucumber (PI 183967)cpecpiB345
Cp4.1LG17g06070Cucumber (Chinese Long) v2cpecuB344
Cp4.1LG17g06070Bottle gourd (USVL1VR-Ls)cpelsiB262
Cp4.1LG17g06070Watermelon (Charleston Gray)cpewcgB280
Cp4.1LG17g06070Watermelon (97103) v1cpewmB311
Cp4.1LG17g06070Melon (DHL92) v3.5.1cpemeB300
Cp4.1LG17g06070Cucumber (Gy14) v2cgybcpeB932
Cp4.1LG17g06070Silver-seed gourdcarcpeB0161
Cp4.1LG17g06070Silver-seed gourdcarcpeB1372
Cp4.1LG17g06070Cucumber (Chinese Long) v3cpecucB0423
Cp4.1LG17g06070Wax gourdcpewgoB0416