Cp4.1LG16g04570.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG16g04570.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG16 : 5718712 .. 5718954 (-)
Sequence length243
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATCGTATCTTTATACGATAAGCAGAGCTAAAGAATGCTTTTACTCGGAGAGGATTCTTAGCCAAAACGAGACCCTGTTGCCAATTAATGCACGCATCCGATTTGACGCCCAAAAGCTGTTCAACAACATGGTGCTGGTTGCGCCGATGAGTCCATCAATCACTGTTGACCGATGCTTACAACTACGAGCAGTTCTCCGACAATGTTCACCAAACCACAACTGTTACGGAACAGACTAA

mRNA sequence

ATGTCATCGTATCTTTATACGATAAGCAGAGCTAAAGAATGCTTTTACTCGGAGAGGATTCTTAGCCAAAACGAGACCCTGTTGCCAATTAATGCACGCATCCGATTTGACGCCCAAAAGCTGTTCAACAACATGGTGCTGGTTGCGCCGATGAGTCCATCAATCACTGTTGACCGATGCTTACAACTACGAGCAGTTCTCCGACAATGTTCACCAAACCACAACTGTTACGGAACAGACTAA

Coding sequence (CDS)

ATGTCATCGTATCTTTATACGATAAGCAGAGCTAAAGAATGCTTTTACTCGGAGAGGATTCTTAGCCAAAACGAGACCCTGTTGCCAATTAATGCACGCATCCGATTTGACGCCCAAAAGCTGTTCAACAACATGGTGCTGGTTGCGCCGATGAGTCCATCAATCACTGTTGACCGATGCTTACAACTACGAGCAGTTCTCCGACAATGTTCACCAAACCACAACTGTTACGGAACAGACTAA

Protein sequence

MSSYLYTISRAKECFYSERILSQNETLLPINARIRFDAQKLFNNMVLVAPMSPSITVDRCLQLRAVLRQCSPNHNCYGTD
Homology
[Close]
BLAST of Cp4.1LG16g04570.1 vs. TrEMBL
Match: A0A0A0LMW2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G418900 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.2e-22
Identity = 54/65 (83.08%), Postives = 56/65 (86.15%), Query Frame = 1 

Query: 16 YSERILSQNETLLPINARIRFDAQKLFNNMVLVAPMSPSITVDRCLQLRAVLRQCSPNHN 75
          YSERILSQN TL PINA IRFDA KLFNN+V+VAPM PSI VDRCLQLRAVLRQC PNH 
Sbjct: 6  YSERILSQNRTLFPINACIRFDALKLFNNVVMVAPMIPSIIVDRCLQLRAVLRQCPPNHY 65

Query: 76 CYGTD 81
          CY TD
Sbjct: 66 CYRTD 70

[Close]
BLAST of Cp4.1LG16g04570.1 vs. NCBI nr
Match: gi|700208136|gb|KGN63255.1| (hypothetical protein Csa_2G418900 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 6.0e-22
Identity = 54/65 (83.08%), Postives = 56/65 (86.15%), Query Frame = 1 

Query: 16 YSERILSQNETLLPINARIRFDAQKLFNNMVLVAPMSPSITVDRCLQLRAVLRQCSPNHN 75
          YSERILSQN TL PINA IRFDA KLFNN+V+VAPM PSI VDRCLQLRAVLRQC PNH 
Sbjct: 6  YSERILSQNRTLFPINACIRFDALKLFNNVVMVAPMIPSIIVDRCLQLRAVLRQCPPNHY 65

Query: 76 CYGTD 81
          CY TD
Sbjct: 66 CYRTD 70

The following BLAST results are available for this feature:
BLAST of Cp4.1LG16g04570.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG16g04570.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LMW2_CUCSA4.2e-2283.08Uncharacterized protein OS=Cucumis sativus GN=Csa_2G418900 PE=4 SV=1[more]
BLAST of Cp4.1LG16g04570.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG16g04570.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208136|gb|KGN63255.1|6.0e-2283.08hypothetical protein Csa_2G418900 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG16g04570Cp4.1LG16g04570gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG16g04570.1:cds:001Cp4.1LG16g04570.1:cds:001CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG16g04570.1Cp4.1LG16g04570.1-proteinpolypeptide