Cp4.1LG16g04570 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG16g04570
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG16 : 5718712 .. 5718954 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATCGTATCTTTATACGATAAGCAGAGCTAAAGAATGCTTTTACTCGGAGAGGATTCTTAGCCAAAACGAGACCCTGTTGCCAATTAATGCACGCATCCGATTTGACGCCCAAAAGCTGTTCAACAACATGGTGCTGGTTGCGCCGATGAGTCCATCAATCACTGTTGACCGATGCTTACAACTACGAGCAGTTCTCCGACAATGTTCACCAAACCACAACTGTTACGGAACAGACTAA

mRNA sequence

ATGTCATCGTATCTTTATACGATAAGCAGAGCTAAAGAATGCTTTTACTCGGAGAGGATTCTTAGCCAAAACGAGACCCTGTTGCCAATTAATGCACGCATCCGATTTGACGCCCAAAAGCTGTTCAACAACATGGTGCTGGTTGCGCCGATGAGTCCATCAATCACTGTTGACCGATGCTTACAACTACGAGCAGTTCTCCGACAATGTTCACCAAACCACAACTGTTACGGAACAGACTAA

Coding sequence (CDS)

ATGTCATCGTATCTTTATACGATAAGCAGAGCTAAAGAATGCTTTTACTCGGAGAGGATTCTTAGCCAAAACGAGACCCTGTTGCCAATTAATGCACGCATCCGATTTGACGCCCAAAAGCTGTTCAACAACATGGTGCTGGTTGCGCCGATGAGTCCATCAATCACTGTTGACCGATGCTTACAACTACGAGCAGTTCTCCGACAATGTTCACCAAACCACAACTGTTACGGAACAGACTAA

Protein sequence

MSSYLYTISRAKECFYSERILSQNETLLPINARIRFDAQKLFNNMVLVAPMSPSITVDRCLQLRAVLRQCSPNHNCYGTD
Homology
[Close]
BLAST of Cp4.1LG16g04570 vs. TrEMBL
Match: A0A0A0LMW2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G418900 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.2e-22
Identity = 54/65 (83.08%), Postives = 56/65 (86.15%), Query Frame = 1 

Query: 16 YSERILSQNETLLPINARIRFDAQKLFNNMVLVAPMSPSITVDRCLQLRAVLRQCSPNHN 75
          YSERILSQN TL PINA IRFDA KLFNN+V+VAPM PSI VDRCLQLRAVLRQC PNH 
Sbjct: 6  YSERILSQNRTLFPINACIRFDALKLFNNVVMVAPMIPSIIVDRCLQLRAVLRQCPPNHY 65

Query: 76 CYGTD 81
          CY TD
Sbjct: 66 CYRTD 70

[Close]
BLAST of Cp4.1LG16g04570 vs. NCBI nr
Match: gi|700208136|gb|KGN63255.1| (hypothetical protein Csa_2G418900 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 6.0e-22
Identity = 54/65 (83.08%), Postives = 56/65 (86.15%), Query Frame = 1 

Query: 16 YSERILSQNETLLPINARIRFDAQKLFNNMVLVAPMSPSITVDRCLQLRAVLRQCSPNHN 75
          YSERILSQN TL PINA IRFDA KLFNN+V+VAPM PSI VDRCLQLRAVLRQC PNH 
Sbjct: 6  YSERILSQNRTLFPINACIRFDALKLFNNVVMVAPMIPSIIVDRCLQLRAVLRQCPPNHY 65

Query: 76 CYGTD 81
          CY TD
Sbjct: 66 CYRTD 70

The following BLAST results are available for this feature:
BLAST of Cp4.1LG16g04570 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG16g04570 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LMW2_CUCSA4.2e-2283.08Uncharacterized protein OS=Cucumis sativus GN=Csa_2G418900 PE=4 SV=1[more]
BLAST of Cp4.1LG16g04570 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG16g04570 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208136|gb|KGN63255.1|6.0e-2283.08hypothetical protein Csa_2G418900 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG16g04570.1Cp4.1LG16g04570.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG16g04570Csa2G418900Cucumber (Chinese Long) v2cpecuB269
Cp4.1LG16g04570ClCG02G008660Watermelon (Charleston Gray)cpewcgB269
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG16g04570Cucurbita pepo (Zucchini)cpecpeB255
Cp4.1LG16g04570Cucurbita pepo (Zucchini)cpecpeB291
Cp4.1LG16g04570Cucurbita pepo (Zucchini)cpecpeB304
Cp4.1LG16g04570Cucurbita pepo (Zucchini)cpecpeB311
Cp4.1LG16g04570Cucumber (Gy14) v1cgycpeB0110
Cp4.1LG16g04570Cucumber (Gy14) v1cgycpeB0393
Cp4.1LG16g04570Cucurbita maxima (Rimu)cmacpeB122
Cp4.1LG16g04570Cucurbita maxima (Rimu)cmacpeB525
Cp4.1LG16g04570Cucurbita maxima (Rimu)cmacpeB562
Cp4.1LG16g04570Cucurbita maxima (Rimu)cmacpeB628
Cp4.1LG16g04570Cucurbita moschata (Rifu)cmocpeB100
Cp4.1LG16g04570Cucurbita moschata (Rifu)cmocpeB483
Cp4.1LG16g04570Cucurbita moschata (Rifu)cmocpeB517
Cp4.1LG16g04570Cucurbita moschata (Rifu)cmocpeB577
Cp4.1LG16g04570Wild cucumber (PI 183967)cpecpiB271
Cp4.1LG16g04570Wild cucumber (PI 183967)cpecpiB301
Cp4.1LG16g04570Cucumber (Chinese Long) v2cpecuB298
Cp4.1LG16g04570Bottle gourd (USVL1VR-Ls)cpelsiB221
Cp4.1LG16g04570Bottle gourd (USVL1VR-Ls)cpelsiB233
Cp4.1LG16g04570Watermelon (Charleston Gray)cpewcgB267
Cp4.1LG16g04570Watermelon (97103) v1cpewmB291
Cp4.1LG16g04570Watermelon (97103) v1cpewmB295
Cp4.1LG16g04570Melon (DHL92) v3.5.1cpemeB257
Cp4.1LG16g04570Melon (DHL92) v3.5.1cpemeB273
Cp4.1LG16g04570Cucumber (Gy14) v2cgybcpeB195
Cp4.1LG16g04570Cucumber (Gy14) v2cgybcpeB765
Cp4.1LG16g04570Cucumber (Gy14) v2cgybcpeB919
Cp4.1LG16g04570Melon (DHL92) v3.6.1cpemedB302
Cp4.1LG16g04570Melon (DHL92) v3.6.1cpemedB317
Cp4.1LG16g04570Silver-seed gourdcarcpeB0043
Cp4.1LG16g04570Silver-seed gourdcarcpeB0465
Cp4.1LG16g04570Silver-seed gourdcarcpeB1221
Cp4.1LG16g04570Silver-seed gourdcarcpeB1253
Cp4.1LG16g04570Cucumber (Chinese Long) v3cpecucB0336
Cp4.1LG16g04570Cucumber (Chinese Long) v3cpecucB0367
Cp4.1LG16g04570Wax gourdcpewgoB0351
Cp4.1LG16g04570Wax gourdcpewgoB0355
Cp4.1LG16g04570Wax gourdcpewgoB0371