Cp4.1LG15g06860.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG15g06860.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	RING zinc finger protein
Location	Cp4.1LG15 : 7360788 .. 7362269 (+)
Sequence length	826

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCTTGGAAATAAAAAATGGTGGAGGCACGTGAGTTAGAGAGACGAGGTTCCTCCGATCGCCTATATAGATGGCCGAAGAACACTGAATCAGTCGAATCAAGATGAACTGATCATCATTTTTTTACCATCTCAAACAGTTCCACGATTTCTCTCTAGTTGTTCTTCTTTTTGCTACCGTTTTCGATCGTACCTTCTCTGTTTCCGTTCGTTCTCGAAGATCGAAGGCATTGAAGTAAGTTTCTGGTCGCTCCTTTTCGTGCTTCGTTTCTTTCTGAAGAAATGTTCACTTTCCATTAATGTGTTTTGTTATGTGGTTTCTGAATTTGGTAAAGGCGGAATCGATTTTATGGCCATTTCAGATTCTTCATTTTCTGCTCATTTCATTGGTCGATTGTGAACTTTTGCCTTCAGTGGATTATTGTCTGTTATTCTGGTTGATGATGATGATTGAGGGTTTCCATTTTCACTAAAATTGGGGTGTTTTGATTTCCTTACGAGTGTTTTGTGGAATGTTATGAAGACTTTTGTTCTTGGATTTTTTAGATTGTTGAAATTTCTCCGTGTCGTTCATGATCACTATAACTGTGAAGATTTTGAAATTGGAACTTCAGCTGTAGGGTTTATTGTTACAGAAATCCGTTCTTGAATGGTAGCTTTCGACCTATGGATCATGATTCCTGTAATTTCATATGATTTAATGGAACAAAACGAATCCTCTTCTGTTTTCCTTCAGATTCTGCCTTTAGGGATCTCTATTTCTTCGTCTAGTTCATATTTTGGTTGTTGAATTTTCATTAATCAGTTGCATAGTTTTTTTTCATTCCCGATGATTTATTCCTGAAATTTGTTCTTCATTACGTGGTAGTGAAAGGTTCTTAGTTATTTGGTAACTTGTTTCAGGTCTGATATGAAGAAAGGCTTGCTTTCAACCTCTTAATCATTGTGTATTTCCGATTAGTCTGCTAGTTTTTCTCCGCTTGTACTGACTGAGCTTGAGAAGTTCACTTCAACCACGATGGGCCTCTCCAGTCTTCCAGCTCCATCTGAAGGAGTCCTAAACGCAATTCTCATAAACGCTGCACTATCCATTTCCATCTTCAAATGCATTGTTCGTTTGATCCTTCACATTTTAGGAATCCGTTTCTCATCGCCATCATCCTTAGTCCCATCTACAGATTCCTTTGAAAATTCCTCAGAGTTGGGAGATTCCAACTTTGGCTCCTCTTGGAGTTACCTCGAGATGTTTCGGAACAGATATCCAAGTATTAGGTTTGATAAAGTACAGGGCTCCGAACGTCTCGAACACGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCAGAGATAAATCACTTATCTTGTGGCCATCTTTTTCACACAGAATGCTTGGAGAAGTGGCTAGATTACTGGAACATCACATGTCCTCTTTGCAGAACTCCTCTAATGTCAGAAGAAGAGAAATCGTGCTTTTGGTGA

mRNA sequence

ATTCTTGGAAATAAAAAATGGTGGAGGCACGTGAGTTAGAGAGACGAGGTTCCTCCGATCGCCTATATAGATGGCCGAAGAACACTGAATCAGTCGAATCAAGATGAACTGATCATCATTTTTTTACCATCTCAAACAGTTCCACGATTTCTCTCTAGTTGTTCTTCTTTTTGCTACCGTTTTCGATCGTACCTTCTCTGTTTCCGTTCGTTCTCGAAGATCGAAGGCATTGAAATTGTTGAAATTTCTCCGTGTCGTTCATGATCACTATAACTGTGAAGATTTTGAAATTGGAACTTCAGCTTCTGCTAGTTTTTCTCCGCTTGTACTGACTGAGCTTGAGAAGTTCACTTCAACCACGATGGGCCTCTCCAGTCTTCCAGCTCCATCTGAAGGAGTCCTAAACGCAATTCTCATAAACGCTGCACTATCCATTTCCATCTTCAAATGCATTGTTCGTTTGATCCTTCACATTTTAGGAATCCGTTTCTCATCGCCATCATCCTTAGTCCCATCTACAGATTCCTTTGAAAATTCCTCAGAGTTGGGAGATTCCAACTTTGGCTCCTCTTGGAGTTACCTCGAGATGTTTCGGAACAGATATCCAAGTATTAGGTTTGATAAAGTACAGGGCTCCGAACGTCTCGAACACGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCAGAGATAAATCACTTATCTTGTGGCCATCTTTTTCACACAGAATGCTTGGAGAAGTGGCTAGATTACTGGAACATCACATGTCCTCTTTGCAGAACTCCTCTAATGTCAGAAGAAGAGAAATCGTGCTTTTGGTGA

Coding sequence (CDS)

ATGGGCCTCTCCAGTCTTCCAGCTCCATCTGAAGGAGTCCTAAACGCAATTCTCATAAACGCTGCACTATCCATTTCCATCTTCAAATGCATTGTTCGTTTGATCCTTCACATTTTAGGAATCCGTTTCTCATCGCCATCATCCTTAGTCCCATCTACAGATTCCTTTGAAAATTCCTCAGAGTTGGGAGATTCCAACTTTGGCTCCTCTTGGAGTTACCTCGAGATGTTTCGGAACAGATATCCAAGTATTAGGTTTGATAAAGTACAGGGCTCCGAACGTCTCGAACACGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCAGAGATAAATCACTTATCTTGTGGCCATCTTTTTCACACAGAATGCTTGGAGAAGTGGCTAGATTACTGGAACATCACATGTCCTCTTTGCAGAACTCCTCTAATGTCAGAAGAAGAGAAATCGTGCTTTTGGTGA

Protein sequence

MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHILGIRFSSPSSLVPSTDSFENSSELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHLFHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW

Homology

[Close]

BLAST of Cp4.1LG15g06860.1 vs. Swiss-Prot
Match: XERIC_ARATH (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE=1 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.3e-38
Identity = 90/150 (60.00%), Postives = 109/150 (72.67%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHILGIRFSSPSSLVPS--TDSFEN 60
           MGLSSLP PSEG+L  IL+N ALSISI K IVR  L I+GI  S PSS  PS  T S EN
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLS-PSSSSPSSVTVSSEN 60

Query: 61  SS--ELGDSNFGSSWSYLEMFRNRYPSIRFDKV-QGSERLEHDCSVCLTQFEPESEINHL 120
           SS  E  D       SYLE FRNR P++RF+ + +  ++ +++CSVCL++F+ +SEIN L
Sbjct: 61  SSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKL 120

Query: 121 SCGHLFHTECLEKWLDYWNITCPLCRTPLM 146
            CGHLFH  CLEKW+DYWNITCPLCRTPL+
Sbjct: 121 KCGHLFHKTCLEKWIDYWNITCPLCRTPLV 149

[Close]

BLAST of Cp4.1LG15g06860.1 vs. Swiss-Prot
Match: RHA2B_ARATH (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2)

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-10
Identity = 29/67 (43.28%), Postives = 40/67 (59.70%), Query Frame = 1


Query: 79  NRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHLFHTECLEKWLDYWNITCP 138
           NR  S R+     S+    DC VCL++ +   E+  L C H+FH +CLE WL + N  CP
Sbjct: 59  NRLFSYRY-----SDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCP 118

Query: 139 LCRTPLM 146
           LCR+PL+
Sbjct: 119 LCRSPLL 120

[Close]

BLAST of Cp4.1LG15g06860.1 vs. Swiss-Prot
Match: RHA2A_ARATH (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-10
Identity = 25/51 (49.02%), Postives = 36/51 (70.59%), Query Frame = 1


Query: 98  DCSVCLTQFEPESEINHLSCGHLFHTECLEKWLDYWNITCPLCRTPLMSEE 149
           DC VCL++ +   E+  L C H+FH +CLE WL  +N TCPLCR+ L+S++
Sbjct: 85  DCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDD 135

[Close]

BLAST of Cp4.1LG15g06860.1 vs. Swiss-Prot
Match: RING2_ARATH (E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana GN=At1g63170 PE=2 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-08
Identity = 23/44 (52.27%), Postives = 32/44 (72.73%), Query Frame = 1


Query: 98  DCSVCLTQFEPESEINHLSCGHLFHTECLEKWLDYWNITCPLCR 142
           +C +CL+ +E E+E+  L CGH FH  C++KWL Y N TCPLC+
Sbjct: 324 ECCICLSAYEDETELRELPCGHHFHCGCVDKWL-YINATCPLCK 366

[Close]

BLAST of Cp4.1LG15g06860.1 vs. Swiss-Prot
Match: ATL18_ARATH (RING-H2 finger protein ATL18 OS=Arabidopsis thaliana GN=ATL18 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.3e-08
Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 1


Query: 99  CSVCLTQFEPESEINHLS-CGHLFHTECLEKWLDYWNITCPLCRT 143
           C +CL +FE E  + HL  C HLFH  C+E WL   ++TCPLCR+
Sbjct: 62  CPICLVEFEAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLCRS 106

[Close]

BLAST of Cp4.1LG15g06860.1 vs. TrEMBL
Match: A0A0A0K534_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G031580 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 2.5e-71
Identity = 130/154 (84.42%), Postives = 139/154 (90.26%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHILGIRFSSPSSLVPSTDSFENSS 60
           MGLSSLPAPSEGVLN IL+N ALSIS+ KC VRLILH++GIR S PS++VPS DSFE+SS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIRLSWPSTVVPSPDSFESSS 60

Query: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120
           ELGD NFGSSW+YLEMFRNRYP IRFDKVQ S   EHDCSVCLTQFEPES INHLSCGHL
Sbjct: 61  ELGDPNFGSSWNYLEMFRNRYPRIRFDKVQSSGCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 155
           FHT+CLEKWLDYWNITCPLCRTPLMSEE KSCFW
Sbjct: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 154

[Close]

BLAST of Cp4.1LG15g06860.1 vs. TrEMBL
Match: A0A0A0K6E0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G031570 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 2.0e-68
Identity = 126/154 (81.82%), Postives = 135/154 (87.66%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHILGIRFSSPSSLVPSTDSFENSS 60
           MGLSSLPAPSEGVLN IL+N ALSIS+ KC VRLILH++GI  S  S++VPS DSF +SS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIHLSWSSTVVPSIDSFGSSS 60

Query: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120
           ELGD NFGSSW+YLEMFRNRYP IRFDKVQ S   EHDCSVCLTQFEPES INHL CGHL
Sbjct: 61  ELGDPNFGSSWNYLEMFRNRYPRIRFDKVQSSGCREHDCSVCLTQFEPESAINHLFCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 155
           FHT+CLEKWLDYWNITCPLCRTPLMSEEEK CFW
Sbjct: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEEKFCFW 154

[Close]

BLAST of Cp4.1LG15g06860.1 vs. TrEMBL
Match: A0A0A0KAU4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G113550 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 3.6e-54
Identity = 108/155 (69.68%), Postives = 123/155 (79.35%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHILGIRFSSPSSLVPSTDSFENSS 60
           MGLSSLPAPSEGVL  IL+N ALSISIFK IVR ILH++GI  SS  +L  S DS EN+ 
Sbjct: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPDSMENAP 60

Query: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120
           E  + +   + SY+E FR+R P+I FDKV+  + LEHDCSVCLTQFEPESEINHLSCGHL
Sbjct: 61  ESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEE-KSCFW 155
           FH  CLEKWLDYWN+TCPLCRTPLM EE+  SCFW
Sbjct: 121 FHRVCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW 155

[Close]

BLAST of Cp4.1LG15g06860.1 vs. TrEMBL
Match: A0A061DMB3_THECC (RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_002456 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 7.5e-52
Identity = 106/154 (68.83%), Postives = 121/154 (78.57%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHILGIRFSSPSSLVPSTDSFENSS 60
           MGLSSLPAPSEGVL  +L+N ALSISI K I+R ILHI+GI  SS SS   ++DS EN S
Sbjct: 1   MGLSSLPAPSEGVLCILLVNTALSISIVKGIIRSILHIVGIHLSSSSS---ASDSVENPS 60

Query: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120
           E  D +  +S SY++ FR+R P+IRFD V   +R EHDCSVCLTQFEPESEIN LSCGHL
Sbjct: 61  ESFDFHLSTSDSYIDEFRSRTPAIRFDAVCSCKRPEHDCSVCLTQFEPESEINRLSCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 155
           FH  CLEKWL YWN+TCPLCRTPL+ EEE SCFW
Sbjct: 121 FHKVCLEKWLKYWNVTCPLCRTPLLPEEEASCFW 151

[Close]

BLAST of Cp4.1LG15g06860.1 vs. TrEMBL
Match: B9IAV8_POPTR (Putative RING zinc finger family protein OS=Populus trichocarpa GN=POPTR_0014s16830g PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.7e-51
Identity = 104/154 (67.53%), Postives = 122/154 (79.22%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHILGIRFSSPSSLVPSTDSFENSS 60
           MGLSSLPAPSEGVL  +L+N ALSISI K IVR ILHI+GIR S PS+ +PS+D+ E++ 
Sbjct: 1   MGLSSLPAPSEGVLCVLLVNTALSISIVKGIVRSILHIVGIRLS-PSASLPSSDNAEDTR 60

Query: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120
           E  +       +Y+E FR+R PSIRF+ V   E+ EHDCSVCLTQFEPESEIN LSCGH+
Sbjct: 61  ESLEFRLSPPENYIEEFRSRMPSIRFNTVCSCEQPEHDCSVCLTQFEPESEINSLSCGHI 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 155
           FH  CLEKWLDYWNITCPLCRTPL+ EE+ SCFW
Sbjct: 121 FHKMCLEKWLDYWNITCPLCRTPLLPEEDASCFW 153

[Close]

BLAST of Cp4.1LG15g06860.1 vs. TAIR10
Match: AT2G04240.1 (AT2G04240.1 RING/U-box superfamily protein)

HSP 1 Score: 159.8 bits (403), Expect = 1.3e-39
Identity = 90/150 (60.00%), Postives = 109/150 (72.67%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHILGIRFSSPSSLVPS--TDSFEN 60
           MGLSSLP PSEG+L  IL+N ALSISI K IVR  L I+GI  S PSS  PS  T S EN
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLS-PSSSSPSSVTVSSEN 60

Query: 61  SS--ELGDSNFGSSWSYLEMFRNRYPSIRFDKV-QGSERLEHDCSVCLTQFEPESEINHL 120
           SS  E  D       SYLE FRNR P++RF+ + +  ++ +++CSVCL++F+ +SEIN L
Sbjct: 61  SSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKL 120

Query: 121 SCGHLFHTECLEKWLDYWNITCPLCRTPLM 146
            CGHLFH  CLEKW+DYWNITCPLCRTPL+
Sbjct: 121 KCGHLFHKTCLEKWIDYWNITCPLCRTPLV 149

[Close]

BLAST of Cp4.1LG15g06860.1 vs. TAIR10
Match: AT3G61460.1 (AT3G61460.1 brassinosteroid-responsive RING-H2)

HSP 1 Score: 77.4 bits (189), Expect = 8.5e-15
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 1


Query: 76  MFRNRYPSIRFDKVQGS-ERLEHDCSVCLTQFEPESEINHL-SCGHLFHTECLEKWLDYW 135
           + R   P I+F+++  S E L  +C+VCL +FE E EI  L +C H+FH  CL++W+D+ 
Sbjct: 70  LIREILPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRWMDHD 129

Query: 136 NITCPLCRTPLMSEEEKSCF 154
             TCPLCRTP + +E +  F
Sbjct: 130 QKTCPLCRTPFVPDEMQEEF 149

[Close]

BLAST of Cp4.1LG15g06860.1 vs. TAIR10
Match: AT1G67856.1 (AT1G67856.1 RING/U-box superfamily protein)

HSP 1 Score: 75.5 bits (184), Expect = 3.2e-14
Identity = 45/145 (31.03%), Postives = 79/145 (54.48%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHILGIRFSSPSSLVPSTDSFENSS 60
           MG+S  P  SEGV+  +++N  +S+S+ K +VR +++++            S+++ E  +
Sbjct: 1   MGISHYPTASEGVMPMLVMNTVVSVSLVKNMVRSVVNMV------------SSETNEARN 60

Query: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINH-LSCGH 120
           +  D +   S     +    + S+  ++   +ER   DC VCL  F+ E E++  +SC H
Sbjct: 61  KEDDQDHEDSKRRRRISITHFESLCENRGSRNEREAMDCCVCLCGFKEEEEVSELVSCKH 120

Query: 121 LFHTECLEKWLDYWNITCPLCRTPL 145
            FH+ CL+KW    + TCPLCR+ L
Sbjct: 121 YFHSACLDKWFGNNHTTCPLCRSIL 133

[Close]

BLAST of Cp4.1LG15g06860.1 vs. TAIR10
Match: AT2G01150.1 (AT2G01150.1 RING-H2 finger protein 2B)

HSP 1 Score: 67.4 bits (163), Expect = 8.8e-12
Identity = 29/67 (43.28%), Postives = 40/67 (59.70%), Query Frame = 1


Query: 79  NRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHLFHTECLEKWLDYWNITCP 138
           NR  S R+     S+    DC VCL++ +   E+  L C H+FH +CLE WL + N  CP
Sbjct: 59  NRLFSYRY-----SDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCP 118

Query: 139 LCRTPLM 146
           LCR+PL+
Sbjct: 119 LCRSPLL 120

[Close]

BLAST of Cp4.1LG15g06860.1 vs. TAIR10
Match: AT1G15100.1 (AT1G15100.1 RING-H2 finger A2A)

HSP 1 Score: 67.4 bits (163), Expect = 8.8e-12
Identity = 25/51 (49.02%), Postives = 36/51 (70.59%), Query Frame = 1


Query: 98  DCSVCLTQFEPESEINHLSCGHLFHTECLEKWLDYWNITCPLCRTPLMSEE 149
           DC VCL++ +   E+  L C H+FH +CLE WL  +N TCPLCR+ L+S++
Sbjct: 85  DCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDD 135

[Close]

BLAST of Cp4.1LG15g06860.1 vs. NCBI nr
Match: gi|659124198|ref|XP_008462031.1| (PREDICTED: E3 ubiquitin-protein ligase ATL4-like isoform X1 [Cucumis melo])

HSP 1 Score: 285.8 bits (730), Expect = 4.5e-74
Identity = 135/154 (87.66%), Postives = 143/154 (92.86%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHILGIRFSSPSSLVPSTDSFENSS 60
           MGLSSLPAPSEGVLN IL+N ALSIS+ KCIVRLILH++GIR S PSS+V STDSFENSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCIVRLILHMVGIRLSWPSSVVSSTDSFENSS 60

Query: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120
           ELGDSNFGSSW+YLEMFRNRYP IRFDKV+ S+  EHDCSVCLTQFEPES INHLSCGHL
Sbjct: 61  ELGDSNFGSSWNYLEMFRNRYPRIRFDKVKSSDCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 155
           FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of Cp4.1LG15g06860.1 vs. NCBI nr
Match: gi|659124202|ref|XP_008462033.1| (PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Cucumis melo])

HSP 1 Score: 284.3 bits (726), Expect = 1.3e-73
Identity = 135/153 (88.24%), Postives = 143/153 (93.46%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHILGIRFSSPSSLVPSTDSFENSS 60
           MGLSSLPAPSEGVLN IL+N ALSIS+FKCIVRLILH++GIR S PSS+VPSTDSFE+SS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISLFKCIVRLILHMVGIRLSWPSSVVPSTDSFESSS 60

Query: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120
           ELGD  FGSSW+YL+MFRNRYP IRFDKVQ SER EHDCSVCLTQFEPES INHLSCGHL
Sbjct: 61  ELGDPIFGSSWNYLDMFRNRYPRIRFDKVQSSERREHDCSVCLTQFEPESVINHLSCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCF 154
           FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCF
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCF 153

[Close]

BLAST of Cp4.1LG15g06860.1 vs. NCBI nr
Match: gi|659124200|ref|XP_008462032.1| (PREDICTED: E3 ubiquitin-protein ligase ATL4-like isoform X2 [Cucumis melo])

HSP 1 Score: 281.6 bits (719), Expect = 8.4e-73
Identity = 134/153 (87.58%), Postives = 142/153 (92.81%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHILGIRFSSPSSLVPSTDSFENSS 60
           MGLSSLPAPSEGVLN IL+N ALSIS+ KCIVRLILH++GIR S PSS+V STDSFENSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCIVRLILHMVGIRLSWPSSVVSSTDSFENSS 60

Query: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120
           ELGDSNFGSSW+YLEMFRNRYP IRFDKV+ S+  EHDCSVCLTQFEPES INHLSCGHL
Sbjct: 61  ELGDSNFGSSWNYLEMFRNRYPRIRFDKVKSSDCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCF 154
           FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCF
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCF 153

[Close]

BLAST of Cp4.1LG15g06860.1 vs. NCBI nr
Match: gi|778723425|ref|XP_004144555.2| (PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X2 [Cucumis sativus])

HSP 1 Score: 276.2 bits (705), Expect = 3.5e-71
Identity = 130/154 (84.42%), Postives = 139/154 (90.26%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHILGIRFSSPSSLVPSTDSFENSS 60
           MGLSSLPAPSEGVLN IL+N ALSIS+ KC VRLILH++GIR S PS++VPS DSFE+SS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIRLSWPSTVVPSPDSFESSS 60

Query: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120
           ELGD NFGSSW+YLEMFRNRYP IRFDKVQ S   EHDCSVCLTQFEPES INHLSCGHL
Sbjct: 61  ELGDPNFGSSWNYLEMFRNRYPRIRFDKVQSSGCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 155
           FHT+CLEKWLDYWNITCPLCRTPLMSEE KSCFW
Sbjct: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 154

[Close]

BLAST of Cp4.1LG15g06860.1 vs. NCBI nr
Match: gi|778723422|ref|XP_011658651.1| (PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X1 [Cucumis sativus])

HSP 1 Score: 271.9 bits (694), Expect = 6.7e-70
Identity = 129/153 (84.31%), Postives = 138/153 (90.20%), Query Frame = 1


Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHILGIRFSSPSSLVPSTDSFENSS 60
           MGLSSLPAPSEGVLN IL+N ALSIS+ KC VRLILH++GIR S PS++VPS DSFE+SS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIRLSWPSTVVPSPDSFESSS 60

Query: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120
           ELGD NFGSSW+YLEMFRNRYP IRFDKVQ S   EHDCSVCLTQFEPES INHLSCGHL
Sbjct: 61  ELGDPNFGSSWNYLEMFRNRYPRIRFDKVQSSGCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCF 154
           FHT+CLEKWLDYWNITCPLCRTPLMSEE KSCF
Sbjct: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCF 153

The following BLAST results are available for this feature:

BLAST of Cp4.1LG15g06860.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
XERIC_ARATH	2.3e-38	60.00	Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE...	[more]
RHA2B_ARATH	1.6e-10	43.28	E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2	[more]
RHA2A_ARATH	1.6e-10	49.02	E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1	[more]
RING2_ARATH	1.5e-08	52.27	E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana GN=At1g63170 PE=2 ...	[more]
ATL18_ARATH	3.3e-08	51.11	RING-H2 finger protein ATL18 OS=Arabidopsis thaliana GN=ATL18 PE=2 SV=1	[more]

BLAST of Cp4.1LG15g06860.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K534_CUCSA	2.5e-71	84.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G031580 PE=4 SV=1	[more]
A0A0A0K6E0_CUCSA	2.0e-68	81.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G031570 PE=4 SV=1	[more]
A0A0A0KAU4_CUCSA	3.6e-54	69.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G113550 PE=4 SV=1	[more]
A0A061DMB3_THECC	7.5e-52	68.83	RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_002456 PE=4 S...	[more]
B9IAV8_POPTR	1.7e-51	67.53	Putative RING zinc finger family protein OS=Populus trichocarpa GN=POPTR_0014s16...	[more]

BLAST of Cp4.1LG15g06860.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G04240.1	1.3e-39	60.00	RING/U-box superfamily protein	[more]
AT3G61460.1	8.5e-15	43.75	brassinosteroid-responsive RING-H2	[more]
AT1G67856.1	3.2e-14	31.03	RING/U-box superfamily protein	[more]
AT2G01150.1	8.8e-12	43.28	RING-H2 finger protein 2B	[more]
AT1G15100.1	8.8e-12	49.02	RING-H2 finger A2A	[more]

BLAST of Cp4.1LG15g06860.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659124198\|ref\|XP_008462031.1\|	4.5e-74	87.66	PREDICTED: E3 ubiquitin-protein ligase ATL4-like isoform X1 [Cucumis melo]	[more]
gi\|659124202\|ref\|XP_008462033.1\|	1.3e-73	88.24	PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Cucumis melo]	[more]
gi\|659124200\|ref\|XP_008462032.1\|	8.4e-73	87.58	PREDICTED: E3 ubiquitin-protein ligase ATL4-like isoform X2 [Cucumis melo]	[more]
gi\|778723425\|ref\|XP_004144555.2\|	3.5e-71	84.42	PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X2 [Cucumis sativ...	[more]
gi\|778723422\|ref\|XP_011658651.1\|	6.7e-70	84.31	PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X1 [Cucumis sativ...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009687	abscisic acid metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003824	catalytic activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG15g06860	Cp4.1LG15g06860	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG15g06860.1:five_prime_utr:001	Cp4.1LG15g06860.1:five_prime_utr:001	five_prime_UTR
Cp4.1LG15g06860.1:five_prime_utr:002	Cp4.1LG15g06860.1:five_prime_utr:002	five_prime_UTR
Cp4.1LG15g06860.1:five_prime_utr:003	Cp4.1LG15g06860.1:five_prime_utr:003	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG15g06860.1:cds:001	Cp4.1LG15g06860.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG15g06860.1	Cp4.1LG15g06860.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 98..141 score: 2.7
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 99..140 score: 1.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 99..141 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 96..144 score: 1.1
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 88..145 score: 2.5E-18coord: 13..45 score: 2.5
None	No IPR available	PANTHER	PTHR14155:SF184	SUBFAMILY NOT NAMED	coord: 88..145 score: 2.5E-18coord: 13..45 score: 2.5
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 83..145 score: 3.53