Cp4.1LG15g06860 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG15g06860
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRING zinc finger protein
LocationCp4.1LG15 : 7360788 .. 7362269 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCTTGGAAATAAAAAATGGTGGAGGCACGTGAGTTAGAGAGACGAGGTTCCTCCGATCGCCTATATAGATGGCCGAAGAACACTGAATCAGTCGAATCAAGATGAACTGATCATCATTTTTTTACCATCTCAAACAGTTCCACGATTTCTCTCTAGTTGTTCTTCTTTTTGCTACCGTTTTCGATCGTACCTTCTCTGTTTCCGTTCGTTCTCGAAGATCGAAGGCATTGAAGTAAGTTTCTGGTCGCTCCTTTTCGTGCTTCGTTTCTTTCTGAAGAAATGTTCACTTTCCATTAATGTGTTTTGTTATGTGGTTTCTGAATTTGGTAAAGGCGGAATCGATTTTATGGCCATTTCAGATTCTTCATTTTCTGCTCATTTCATTGGTCGATTGTGAACTTTTGCCTTCAGTGGATTATTGTCTGTTATTCTGGTTGATGATGATGATTGAGGGTTTCCATTTTCACTAAAATTGGGGTGTTTTGATTTCCTTACGAGTGTTTTGTGGAATGTTATGAAGACTTTTGTTCTTGGATTTTTTAGATTGTTGAAATTTCTCCGTGTCGTTCATGATCACTATAACTGTGAAGATTTTGAAATTGGAACTTCAGCTGTAGGGTTTATTGTTACAGAAATCCGTTCTTGAATGGTAGCTTTCGACCTATGGATCATGATTCCTGTAATTTCATATGATTTAATGGAACAAAACGAATCCTCTTCTGTTTTCCTTCAGATTCTGCCTTTAGGGATCTCTATTTCTTCGTCTAGTTCATATTTTGGTTGTTGAATTTTCATTAATCAGTTGCATAGTTTTTTTTCATTCCCGATGATTTATTCCTGAAATTTGTTCTTCATTACGTGGTAGTGAAAGGTTCTTAGTTATTTGGTAACTTGTTTCAGGTCTGATATGAAGAAAGGCTTGCTTTCAACCTCTTAATCATTGTGTATTTCCGATTAGTCTGCTAGTTTTTCTCCGCTTGTACTGACTGAGCTTGAGAAGTTCACTTCAACCACGATGGGCCTCTCCAGTCTTCCAGCTCCATCTGAAGGAGTCCTAAACGCAATTCTCATAAACGCTGCACTATCCATTTCCATCTTCAAATGCATTGTTCGTTTGATCCTTCACATTTTAGGAATCCGTTTCTCATCGCCATCATCCTTAGTCCCATCTACAGATTCCTTTGAAAATTCCTCAGAGTTGGGAGATTCCAACTTTGGCTCCTCTTGGAGTTACCTCGAGATGTTTCGGAACAGATATCCAAGTATTAGGTTTGATAAAGTACAGGGCTCCGAACGTCTCGAACACGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCAGAGATAAATCACTTATCTTGTGGCCATCTTTTTCACACAGAATGCTTGGAGAAGTGGCTAGATTACTGGAACATCACATGTCCTCTTTGCAGAACTCCTCTAATGTCAGAAGAAGAGAAATCGTGCTTTTGGTGA

mRNA sequence

ATTCTTGGAAATAAAAAATGGTGGAGGCACGTGAGTTAGAGAGACGAGGTTCCTCCGATCGCCTATATAGATGGCCGAAGAACACTGAATCAGTCGAATCAAGATGAACTGATCATCATTTTTTTACCATCTCAAACAGTTCCACGATTTCTCTCTAGTTGTTCTTCTTTTTGCTACCGTTTTCGATCGTACCTTCTCTGTTTCCGTTCGTTCTCGAAGATCGAAGGCATTGAAATTGTTGAAATTTCTCCGTGTCGTTCATGATCACTATAACTGTGAAGATTTTGAAATTGGAACTTCAGCTTCTGCTAGTTTTTCTCCGCTTGTACTGACTGAGCTTGAGAAGTTCACTTCAACCACGATGGGCCTCTCCAGTCTTCCAGCTCCATCTGAAGGAGTCCTAAACGCAATTCTCATAAACGCTGCACTATCCATTTCCATCTTCAAATGCATTGTTCGTTTGATCCTTCACATTTTAGGAATCCGTTTCTCATCGCCATCATCCTTAGTCCCATCTACAGATTCCTTTGAAAATTCCTCAGAGTTGGGAGATTCCAACTTTGGCTCCTCTTGGAGTTACCTCGAGATGTTTCGGAACAGATATCCAAGTATTAGGTTTGATAAAGTACAGGGCTCCGAACGTCTCGAACACGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCAGAGATAAATCACTTATCTTGTGGCCATCTTTTTCACACAGAATGCTTGGAGAAGTGGCTAGATTACTGGAACATCACATGTCCTCTTTGCAGAACTCCTCTAATGTCAGAAGAAGAGAAATCGTGCTTTTGGTGA

Coding sequence (CDS)

ATGGGCCTCTCCAGTCTTCCAGCTCCATCTGAAGGAGTCCTAAACGCAATTCTCATAAACGCTGCACTATCCATTTCCATCTTCAAATGCATTGTTCGTTTGATCCTTCACATTTTAGGAATCCGTTTCTCATCGCCATCATCCTTAGTCCCATCTACAGATTCCTTTGAAAATTCCTCAGAGTTGGGAGATTCCAACTTTGGCTCCTCTTGGAGTTACCTCGAGATGTTTCGGAACAGATATCCAAGTATTAGGTTTGATAAAGTACAGGGCTCCGAACGTCTCGAACACGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCAGAGATAAATCACTTATCTTGTGGCCATCTTTTTCACACAGAATGCTTGGAGAAGTGGCTAGATTACTGGAACATCACATGTCCTCTTTGCAGAACTCCTCTAATGTCAGAAGAAGAGAAATCGTGCTTTTGGTGA

Protein sequence

MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHILGIRFSSPSSLVPSTDSFENSSELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHLFHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW
Homology
[Close]
BLAST of Cp4.1LG15g06860 vs. Swiss-Prot
Match: XERIC_ARATH (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE=1 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.3e-38
Identity = 90/150 (60.00%), Postives = 109/150 (72.67%), Query Frame = 1 

Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHILGIRFSSPSSLVPS--TDSFEN 60
           MGLSSLP PSEG+L  IL+N ALSISI K IVR  L I+GI  S PSS  PS  T S EN
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLS-PSSSSPSSVTVSSEN 60

Query: 61  SS--ELGDSNFGSSWSYLEMFRNRYPSIRFDKV-QGSERLEHDCSVCLTQFEPESEINHL 120
           SS  E  D       SYLE FRNR P++RF+ + +  ++ +++CSVCL++F+ +SEIN L
Sbjct: 61  SSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKL 120

Query: 121 SCGHLFHTECLEKWLDYWNITCPLCRTPLM 146
            CGHLFH  CLEKW+DYWNITCPLCRTPL+
Sbjct: 121 KCGHLFHKTCLEKWIDYWNITCPLCRTPLV 149

[Close]
BLAST of Cp4.1LG15g06860 vs. Swiss-Prot
Match: RHA2B_ARATH (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2)

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-10
Identity = 29/67 (43.28%), Postives = 40/67 (59.70%), Query Frame = 1 

Query: 79  NRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHLFHTECLEKWLDYWNITCP 138
           NR  S R+     S+    DC VCL++ +   E+  L C H+FH +CLE WL + N  CP
Sbjct: 59  NRLFSYRY-----SDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCP 118

Query: 139 LCRTPLM 146
           LCR+PL+
Sbjct: 119 LCRSPLL 120

[Close]
BLAST of Cp4.1LG15g06860 vs. Swiss-Prot
Match: RHA2A_ARATH (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-10
Identity = 25/51 (49.02%), Postives = 36/51 (70.59%), Query Frame = 1 

Query: 98  DCSVCLTQFEPESEINHLSCGHLFHTECLEKWLDYWNITCPLCRTPLMSEE 149
           DC VCL++ +   E+  L C H+FH +CLE WL  +N TCPLCR+ L+S++
Sbjct: 85  DCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDD 135

[Close]
BLAST of Cp4.1LG15g06860 vs. Swiss-Prot
Match: RING2_ARATH (E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana GN=At1g63170 PE=2 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-08
Identity = 23/44 (52.27%), Postives = 32/44 (72.73%), Query Frame = 1 

Query: 98  DCSVCLTQFEPESEINHLSCGHLFHTECLEKWLDYWNITCPLCR 142
           +C +CL+ +E E+E+  L CGH FH  C++KWL Y N TCPLC+
Sbjct: 324 ECCICLSAYEDETELRELPCGHHFHCGCVDKWL-YINATCPLCK 366

[Close]
BLAST of Cp4.1LG15g06860 vs. Swiss-Prot
Match: ATL18_ARATH (RING-H2 finger protein ATL18 OS=Arabidopsis thaliana GN=ATL18 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.3e-08
Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 1 

Query: 99  CSVCLTQFEPESEINHLS-CGHLFHTECLEKWLDYWNITCPLCRT 143
           C +CL +FE E  + HL  C HLFH  C+E WL   ++TCPLCR+
Sbjct: 62  CPICLVEFEAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLCRS 106

[Close]
BLAST of Cp4.1LG15g06860 vs. TrEMBL
Match: A0A0A0K534_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G031580 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 2.5e-71
Identity = 130/154 (84.42%), Postives = 139/154 (90.26%), Query Frame = 1 

Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHILGIRFSSPSSLVPSTDSFENSS 60
           MGLSSLPAPSEGVLN IL+N ALSIS+ KC VRLILH++GIR S PS++VPS DSFE+SS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIRLSWPSTVVPSPDSFESSS 60

Query: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120
           ELGD NFGSSW+YLEMFRNRYP IRFDKVQ S   EHDCSVCLTQFEPES INHLSCGHL
Sbjct: 61  ELGDPNFGSSWNYLEMFRNRYPRIRFDKVQSSGCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 155
           FHT+CLEKWLDYWNITCPLCRTPLMSEE KSCFW
Sbjct: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 154

[Close]
BLAST of Cp4.1LG15g06860 vs. TrEMBL
Match: A0A0A0K6E0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G031570 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 2.0e-68
Identity = 126/154 (81.82%), Postives = 135/154 (87.66%), Query Frame = 1 

Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHILGIRFSSPSSLVPSTDSFENSS 60
           MGLSSLPAPSEGVLN IL+N ALSIS+ KC VRLILH++GI  S  S++VPS DSF +SS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIHLSWSSTVVPSIDSFGSSS 60

Query: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120
           ELGD NFGSSW+YLEMFRNRYP IRFDKVQ S   EHDCSVCLTQFEPES INHL CGHL
Sbjct: 61  ELGDPNFGSSWNYLEMFRNRYPRIRFDKVQSSGCREHDCSVCLTQFEPESAINHLFCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 155
           FHT+CLEKWLDYWNITCPLCRTPLMSEEEK CFW
Sbjct: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEEKFCFW 154

[Close]
BLAST of Cp4.1LG15g06860 vs. TrEMBL
Match: A0A0A0KAU4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G113550 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 3.6e-54
Identity = 108/155 (69.68%), Postives = 123/155 (79.35%), Query Frame = 1 

Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHILGIRFSSPSSLVPSTDSFENSS 60
           MGLSSLPAPSEGVL  IL+N ALSISIFK IVR ILH++GI  SS  +L  S DS EN+ 
Sbjct: 1   MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPDSMENAP 60

Query: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120
           E  + +   + SY+E FR+R P+I FDKV+  + LEHDCSVCLTQFEPESEINHLSCGHL
Sbjct: 61  ESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEE-KSCFW 155
           FH  CLEKWLDYWN+TCPLCRTPLM EE+  SCFW
Sbjct: 121 FHRVCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW 155

[Close]
BLAST of Cp4.1LG15g06860 vs. TrEMBL
Match: A0A061DMB3_THECC (RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_002456 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 7.5e-52
Identity = 106/154 (68.83%), Postives = 121/154 (78.57%), Query Frame = 1 

Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHILGIRFSSPSSLVPSTDSFENSS 60
           MGLSSLPAPSEGVL  +L+N ALSISI K I+R ILHI+GI  SS SS   ++DS EN S
Sbjct: 1   MGLSSLPAPSEGVLCILLVNTALSISIVKGIIRSILHIVGIHLSSSSS---ASDSVENPS 60

Query: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120
           E  D +  +S SY++ FR+R P+IRFD V   +R EHDCSVCLTQFEPESEIN LSCGHL
Sbjct: 61  ESFDFHLSTSDSYIDEFRSRTPAIRFDAVCSCKRPEHDCSVCLTQFEPESEINRLSCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 155
           FH  CLEKWL YWN+TCPLCRTPL+ EEE SCFW
Sbjct: 121 FHKVCLEKWLKYWNVTCPLCRTPLLPEEEASCFW 151

[Close]
BLAST of Cp4.1LG15g06860 vs. TrEMBL
Match: B9IAV8_POPTR (Putative RING zinc finger family protein OS=Populus trichocarpa GN=POPTR_0014s16830g PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.7e-51
Identity = 104/154 (67.53%), Postives = 122/154 (79.22%), Query Frame = 1 

Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHILGIRFSSPSSLVPSTDSFENSS 60
           MGLSSLPAPSEGVL  +L+N ALSISI K IVR ILHI+GIR S PS+ +PS+D+ E++ 
Sbjct: 1   MGLSSLPAPSEGVLCVLLVNTALSISIVKGIVRSILHIVGIRLS-PSASLPSSDNAEDTR 60

Query: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120
           E  +       +Y+E FR+R PSIRF+ V   E+ EHDCSVCLTQFEPESEIN LSCGH+
Sbjct: 61  ESLEFRLSPPENYIEEFRSRMPSIRFNTVCSCEQPEHDCSVCLTQFEPESEINSLSCGHI 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 155
           FH  CLEKWLDYWNITCPLCRTPL+ EE+ SCFW
Sbjct: 121 FHKMCLEKWLDYWNITCPLCRTPLLPEEDASCFW 153

[Close]
BLAST of Cp4.1LG15g06860 vs. TAIR10
Match: AT2G04240.1 (AT2G04240.1 RING/U-box superfamily protein)

HSP 1 Score: 159.8 bits (403), Expect = 1.3e-39
Identity = 90/150 (60.00%), Postives = 109/150 (72.67%), Query Frame = 1 

Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHILGIRFSSPSSLVPS--TDSFEN 60
           MGLSSLP PSEG+L  IL+N ALSISI K IVR  L I+GI  S PSS  PS  T S EN
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLS-PSSSSPSSVTVSSEN 60

Query: 61  SS--ELGDSNFGSSWSYLEMFRNRYPSIRFDKV-QGSERLEHDCSVCLTQFEPESEINHL 120
           SS  E  D       SYLE FRNR P++RF+ + +  ++ +++CSVCL++F+ +SEIN L
Sbjct: 61  SSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKL 120

Query: 121 SCGHLFHTECLEKWLDYWNITCPLCRTPLM 146
            CGHLFH  CLEKW+DYWNITCPLCRTPL+
Sbjct: 121 KCGHLFHKTCLEKWIDYWNITCPLCRTPLV 149

[Close]
BLAST of Cp4.1LG15g06860 vs. TAIR10
Match: AT3G61460.1 (AT3G61460.1 brassinosteroid-responsive RING-H2)

HSP 1 Score: 77.4 bits (189), Expect = 8.5e-15
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 1 

Query: 76  MFRNRYPSIRFDKVQGS-ERLEHDCSVCLTQFEPESEINHL-SCGHLFHTECLEKWLDYW 135
           + R   P I+F+++  S E L  +C+VCL +FE E EI  L +C H+FH  CL++W+D+ 
Sbjct: 70  LIREILPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRWMDHD 129

Query: 136 NITCPLCRTPLMSEEEKSCF 154
             TCPLCRTP + +E +  F
Sbjct: 130 QKTCPLCRTPFVPDEMQEEF 149

[Close]
BLAST of Cp4.1LG15g06860 vs. TAIR10
Match: AT1G67856.1 (AT1G67856.1 RING/U-box superfamily protein)

HSP 1 Score: 75.5 bits (184), Expect = 3.2e-14
Identity = 45/145 (31.03%), Postives = 79/145 (54.48%), Query Frame = 1 

Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHILGIRFSSPSSLVPSTDSFENSS 60
           MG+S  P  SEGV+  +++N  +S+S+ K +VR +++++            S+++ E  +
Sbjct: 1   MGISHYPTASEGVMPMLVMNTVVSVSLVKNMVRSVVNMV------------SSETNEARN 60

Query: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINH-LSCGH 120
           +  D +   S     +    + S+  ++   +ER   DC VCL  F+ E E++  +SC H
Sbjct: 61  KEDDQDHEDSKRRRRISITHFESLCENRGSRNEREAMDCCVCLCGFKEEEEVSELVSCKH 120

Query: 121 LFHTECLEKWLDYWNITCPLCRTPL 145
            FH+ CL+KW    + TCPLCR+ L
Sbjct: 121 YFHSACLDKWFGNNHTTCPLCRSIL 133

[Close]
BLAST of Cp4.1LG15g06860 vs. TAIR10
Match: AT2G01150.1 (AT2G01150.1 RING-H2 finger protein 2B)

HSP 1 Score: 67.4 bits (163), Expect = 8.8e-12
Identity = 29/67 (43.28%), Postives = 40/67 (59.70%), Query Frame = 1 

Query: 79  NRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHLFHTECLEKWLDYWNITCP 138
           NR  S R+     S+    DC VCL++ +   E+  L C H+FH +CLE WL + N  CP
Sbjct: 59  NRLFSYRY-----SDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCP 118

Query: 139 LCRTPLM 146
           LCR+PL+
Sbjct: 119 LCRSPLL 120

[Close]
BLAST of Cp4.1LG15g06860 vs. TAIR10
Match: AT1G15100.1 (AT1G15100.1 RING-H2 finger A2A)

HSP 1 Score: 67.4 bits (163), Expect = 8.8e-12
Identity = 25/51 (49.02%), Postives = 36/51 (70.59%), Query Frame = 1 

Query: 98  DCSVCLTQFEPESEINHLSCGHLFHTECLEKWLDYWNITCPLCRTPLMSEE 149
           DC VCL++ +   E+  L C H+FH +CLE WL  +N TCPLCR+ L+S++
Sbjct: 85  DCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDD 135

[Close]
BLAST of Cp4.1LG15g06860 vs. NCBI nr
Match: gi|659124198|ref|XP_008462031.1| (PREDICTED: E3 ubiquitin-protein ligase ATL4-like isoform X1 [Cucumis melo])

HSP 1 Score: 285.8 bits (730), Expect = 4.5e-74
Identity = 135/154 (87.66%), Postives = 143/154 (92.86%), Query Frame = 1 

Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHILGIRFSSPSSLVPSTDSFENSS 60
           MGLSSLPAPSEGVLN IL+N ALSIS+ KCIVRLILH++GIR S PSS+V STDSFENSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCIVRLILHMVGIRLSWPSSVVSSTDSFENSS 60

Query: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120
           ELGDSNFGSSW+YLEMFRNRYP IRFDKV+ S+  EHDCSVCLTQFEPES INHLSCGHL
Sbjct: 61  ELGDSNFGSSWNYLEMFRNRYPRIRFDKVKSSDCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 155
           FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]
BLAST of Cp4.1LG15g06860 vs. NCBI nr
Match: gi|659124202|ref|XP_008462033.1| (PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Cucumis melo])

HSP 1 Score: 284.3 bits (726), Expect = 1.3e-73
Identity = 135/153 (88.24%), Postives = 143/153 (93.46%), Query Frame = 1 

Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHILGIRFSSPSSLVPSTDSFENSS 60
           MGLSSLPAPSEGVLN IL+N ALSIS+FKCIVRLILH++GIR S PSS+VPSTDSFE+SS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISLFKCIVRLILHMVGIRLSWPSSVVPSTDSFESSS 60

Query: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120
           ELGD  FGSSW+YL+MFRNRYP IRFDKVQ SER EHDCSVCLTQFEPES INHLSCGHL
Sbjct: 61  ELGDPIFGSSWNYLDMFRNRYPRIRFDKVQSSERREHDCSVCLTQFEPESVINHLSCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCF 154
           FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCF
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCF 153

[Close]
BLAST of Cp4.1LG15g06860 vs. NCBI nr
Match: gi|659124200|ref|XP_008462032.1| (PREDICTED: E3 ubiquitin-protein ligase ATL4-like isoform X2 [Cucumis melo])

HSP 1 Score: 281.6 bits (719), Expect = 8.4e-73
Identity = 134/153 (87.58%), Postives = 142/153 (92.81%), Query Frame = 1 

Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHILGIRFSSPSSLVPSTDSFENSS 60
           MGLSSLPAPSEGVLN IL+N ALSIS+ KCIVRLILH++GIR S PSS+V STDSFENSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCIVRLILHMVGIRLSWPSSVVSSTDSFENSS 60

Query: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120
           ELGDSNFGSSW+YLEMFRNRYP IRFDKV+ S+  EHDCSVCLTQFEPES INHLSCGHL
Sbjct: 61  ELGDSNFGSSWNYLEMFRNRYPRIRFDKVKSSDCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCF 154
           FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCF
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCF 153

[Close]
BLAST of Cp4.1LG15g06860 vs. NCBI nr
Match: gi|778723425|ref|XP_004144555.2| (PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X2 [Cucumis sativus])

HSP 1 Score: 276.2 bits (705), Expect = 3.5e-71
Identity = 130/154 (84.42%), Postives = 139/154 (90.26%), Query Frame = 1 

Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHILGIRFSSPSSLVPSTDSFENSS 60
           MGLSSLPAPSEGVLN IL+N ALSIS+ KC VRLILH++GIR S PS++VPS DSFE+SS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIRLSWPSTVVPSPDSFESSS 60

Query: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120
           ELGD NFGSSW+YLEMFRNRYP IRFDKVQ S   EHDCSVCLTQFEPES INHLSCGHL
Sbjct: 61  ELGDPNFGSSWNYLEMFRNRYPRIRFDKVQSSGCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 155
           FHT+CLEKWLDYWNITCPLCRTPLMSEE KSCFW
Sbjct: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 154

[Close]
BLAST of Cp4.1LG15g06860 vs. NCBI nr
Match: gi|778723422|ref|XP_011658651.1| (PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X1 [Cucumis sativus])

HSP 1 Score: 271.9 bits (694), Expect = 6.7e-70
Identity = 129/153 (84.31%), Postives = 138/153 (90.20%), Query Frame = 1 

Query: 1   MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHILGIRFSSPSSLVPSTDSFENSS 60
           MGLSSLPAPSEGVLN IL+N ALSIS+ KC VRLILH++GIR S PS++VPS DSFE+SS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIRLSWPSTVVPSPDSFESSS 60

Query: 61  ELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHL 120
           ELGD NFGSSW+YLEMFRNRYP IRFDKVQ S   EHDCSVCLTQFEPES INHLSCGHL
Sbjct: 61  ELGDPNFGSSWNYLEMFRNRYPRIRFDKVQSSGCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCF 154
           FHT+CLEKWLDYWNITCPLCRTPLMSEE KSCF
Sbjct: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCF 153

The following BLAST results are available for this feature:
BLAST of Cp4.1LG15g06860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
XERIC_ARATH2.3e-3860.00Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE... [more]
RHA2B_ARATH1.6e-1043.28E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2[more]
RHA2A_ARATH1.6e-1049.02E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1[more]
RING2_ARATH1.5e-0852.27E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana GN=At1g63170 PE=2 ... [more]
ATL18_ARATH3.3e-0851.11RING-H2 finger protein ATL18 OS=Arabidopsis thaliana GN=ATL18 PE=2 SV=1[more]
BLAST of Cp4.1LG15g06860 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K534_CUCSA2.5e-7184.42Uncharacterized protein OS=Cucumis sativus GN=Csa_7G031580 PE=4 SV=1[more]
A0A0A0K6E0_CUCSA2.0e-6881.82Uncharacterized protein OS=Cucumis sativus GN=Csa_7G031570 PE=4 SV=1[more]
A0A0A0KAU4_CUCSA3.6e-5469.68Uncharacterized protein OS=Cucumis sativus GN=Csa_6G113550 PE=4 SV=1[more]
A0A061DMB3_THECC7.5e-5268.83RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_002456 PE=4 S... [more]
B9IAV8_POPTR1.7e-5167.53Putative RING zinc finger family protein OS=Populus trichocarpa GN=POPTR_0014s16... [more]
BLAST of Cp4.1LG15g06860 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G04240.11.3e-3960.00 RING/U-box superfamily protein[more]
AT3G61460.18.5e-1543.75 brassinosteroid-responsive RING-H2[more]
AT1G67856.13.2e-1431.03 RING/U-box superfamily protein[more]
AT2G01150.18.8e-1243.28 RING-H2 finger protein 2B[more]
AT1G15100.18.8e-1249.02 RING-H2 finger A2A[more]
BLAST of Cp4.1LG15g06860 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659124198|ref|XP_008462031.1|4.5e-7487.66PREDICTED: E3 ubiquitin-protein ligase ATL4-like isoform X1 [Cucumis melo][more]
gi|659124202|ref|XP_008462033.1|1.3e-7388.24PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Cucumis melo][more]
gi|659124200|ref|XP_008462032.1|8.4e-7387.58PREDICTED: E3 ubiquitin-protein ligase ATL4-like isoform X2 [Cucumis melo][more]
gi|778723425|ref|XP_004144555.2|3.5e-7184.42PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X2 [Cucumis sativ... [more]
gi|778723422|ref|XP_011658651.1|6.7e-7084.31PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X1 [Cucumis sativ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009687 abscisic acid metabolic process
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0008150 biological_process
biological_process GO:0016567 protein ubiquitination
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0006396 RNA processing
biological_process GO:0090501 RNA phosphodiester bond hydrolysis
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016874 ligase activity
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0004540 ribonuclease activity
molecular_function GO:0003723 RNA binding
molecular_function GO:2001070 starch binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0061630 ubiquitin protein ligase activity
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g06860.1Cp4.1LG15g06860.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 98..141
score: 2.7
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 99..140
score: 1.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 99..141
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 96..144
score: 1.1
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 88..145
score: 2.5E-18coord: 13..45
score: 2.5
NoneNo IPR availablePANTHERPTHR14155:SF184SUBFAMILY NOT NAMEDcoord: 88..145
score: 2.5E-18coord: 13..45
score: 2.5
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 83..145
score: 3.53

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG15g06860Cucsa.100150Cucumber (Gy14) v1cgycpeB0206
Cp4.1LG15g06860Cucsa.120170Cucumber (Gy14) v1cgycpeB0287
Cp4.1LG15g06860CmaCh11G013060Cucurbita maxima (Rimu)cmacpeB117
Cp4.1LG15g06860CmaCh19G008400Cucurbita maxima (Rimu)cmacpeB522
Cp4.1LG15g06860CmoCh11G018160Cucurbita moschata (Rifu)cmocpeB098
Cp4.1LG15g06860CmoCh19G008560Cucurbita moschata (Rifu)cmocpeB481
Cp4.1LG15g06860Cla015704Watermelon (97103) v1cpewmB268
Cp4.1LG15g06860Csa6G113550Cucumber (Chinese Long) v2cpecuB250
Cp4.1LG15g06860Csa7G031570Cucumber (Chinese Long) v2cpecuB257
Cp4.1LG15g06860MELO3C013454Melon (DHL92) v3.5.1cpemeB213
Cp4.1LG15g06860MELO3C024183Melon (DHL92) v3.5.1cpemeB223
Cp4.1LG15g06860ClCG02G003020Watermelon (Charleston Gray)cpewcgB233
Cp4.1LG15g06860CSPI07G02540Wild cucumber (PI 183967)cpecpiB257
Cp4.1LG15g06860CSPI06G09350Wild cucumber (PI 183967)cpecpiB251
Cp4.1LG15g06860Lsi10G000360Bottle gourd (USVL1VR-Ls)cpelsiB194
Cp4.1LG15g06860Lsi11G013330Bottle gourd (USVL1VR-Ls)cpelsiB199
Cp4.1LG15g06860MELO3C024183.2Melon (DHL92) v3.6.1cpemedB261
Cp4.1LG15g06860CsaV3_7G002390Cucumber (Chinese Long) v3cpecucB0322
Cp4.1LG15g06860CsaV3_6G009740Cucumber (Chinese Long) v3cpecucB0316
Cp4.1LG15g06860Bhi10G001001Wax gourdcpewgoB0336
Cp4.1LG15g06860Bhi05G001312Wax gourdcpewgoB0326
Cp4.1LG15g06860CsGy7G002210Cucumber (Gy14) v2cgybcpeB910
Cp4.1LG15g06860CsGy6G009420Cucumber (Gy14) v2cgybcpeB751
Cp4.1LG15g06860Carg04133Silver-seed gourdcarcpeB0281
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG15g06860Cp4.1LG04g04230Cucurbita pepo (Zucchini)cpecpeB267
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG15g06860Cucurbita pepo (Zucchini)cpecpeB255
Cp4.1LG15g06860Cucurbita pepo (Zucchini)cpecpeB272
Cp4.1LG15g06860Cucurbita maxima (Rimu)cmacpeB118
Cp4.1LG15g06860Cucurbita maxima (Rimu)cmacpeB560
Cp4.1LG15g06860Cucurbita moschata (Rifu)cmocpeB093
Cp4.1LG15g06860Cucurbita moschata (Rifu)cmocpeB513
Cp4.1LG15g06860Silver-seed gourdcarcpeB0484
Cp4.1LG15g06860Silver-seed gourdcarcpeB1480
Cp4.1LG15g06860Silver-seed gourdcarcpeB1481