Cp4.1LG15g04020.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG15g04020.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Major facilitator superfamily protein isoform 1
Location	Cp4.1LG15 : 5188239 .. 5188868 (+)
Sequence length	198

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTATAGCCTACTTCTATCTGACATGACATTAGTAAAGACATAGTGATCCATATTCATCTCAGGATAAAAAGGAGATCGACCTTCCGGAGTATAAAGACCAGCCAATTATAAACTTCACTACGGAGTCAAATTAAGAAAGTTAGAATGTCATGTAATTTTGTATGCATAGTGTAAGGATTGACCAAACCCAAAAGCCTAAGCTAATGTGTTAGTCTATATTTAATATTTTTGTATCTATTCTTTAGCTAATTACTTCTCTTGTTGCAGAGGGTCCGATAAACTTCGTGTGCCTACATTGCATGATGACTAGTCTAAGGCCGCTTTCTATAGCTATGTTCACAGTCGCAATTCACATCTCCCGATAAACTTCGTGTGCCTACATTGCGTGACGCCTAGTCTAAGGCCGCTTTCTATCGCTATGTCCACAGTTGCAATTCACATCTCCCGGTAAACTTCGTGTGTCTACATTGCGTGACGCCTAGTCTAAGGCCGCTTTCTATGTCTATGTCGACAATTGCAATTCAAATTTTTGGAGATGTGCCATCTTCGCCTCTGGTTGGAGTTGTCGAGGTTAGTTGTTTAGAAGTTAAGTCTATTCTATATATTTTTAGTTAAAAGTTTTAA

mRNA sequence

ATGAATCGCAATTCACATCTCCCGATAAACTTCGTGTGCCTACATTGCGTGACGCCTAGTCTAAGGCCGCTTTCTATCGCTATGTCCACAGTTGCAATTCACATCTCCCGGCCGCTTTCTATGTCTATGTCGACAATTGCAATTCAAATTTTTGGAGATGTGCCATCTTCGCCTCTGGTTGGAGTTGTCGAGTTTTAA

Coding sequence (CDS)

ATGAATCGCAATTCACATCTCCCGATAAACTTCGTGTGCCTACATTGCGTGACGCCTAGTCTAAGGCCGCTTTCTATCGCTATGTCCACAGTTGCAATTCACATCTCCCGGCCGCTTTCTATGTCTATGTCGACAATTGCAATTCAAATTTTTGGAGATGTGCCATCTTCGCCTCTGGTTGGAGTTGTCGAGTTTTAA

Protein sequence

MNRNSHLPINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVEF

Homology

[Close]

BLAST of Cp4.1LG15g04020.1 vs. Swiss-Prot
Match: SPNS3_ARATH (Probable sphingolipid transporter spinster homolog 3 OS=Arabidopsis thaliana GN=At2g22730 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.6e-11
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+N+VCLHCV PSLRPLS+A+STVAIH               IFGDVPSSPLVG+V+
Sbjct: 410 PVNYVCLHCVKPSLRPLSMAISTVAIH---------------IFGDVPSSPLVGIVQ 451

[Close]

BLAST of Cp4.1LG15g04020.1 vs. Swiss-Prot
Match: SPNS2_ARATH (Probable sphingolipid transporter spinster homolog 2 OS=Arabidopsis thaliana GN=At5g64500 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-09
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 1


Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+NF+ LHCV PSLRPL++AMSTV+IH               IFGDVPSSPLVGV++
Sbjct: 385 PVNFIVLHCVKPSLRPLAMAMSTVSIH---------------IFGDVPSSPLVGVLQ 426

[Close]

BLAST of Cp4.1LG15g04020.1 vs. Swiss-Prot
Match: SPNS1_ARATH (Probable sphingolipid transporter spinster homolog 1 OS=Arabidopsis thaliana GN=At5g65687 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 6.8e-08
Identity = 31/57 (54.39%), Postives = 36/57 (63.16%), Query Frame = 1


Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+NFVCLHCV P+LRPLS+A STV IH               I GDVPSSPL G ++
Sbjct: 391 PVNFVCLHCVRPNLRPLSMASSTVLIH---------------ILGDVPSSPLYGKMQ 432

[Close]

BLAST of Cp4.1LG15g04020.1 vs. TrEMBL
Match: G7JTZ9_MEDTR (Sphingolipid transporter spinster-like protein, putative OS=Medicago truncatula GN=MTR_4g092770 PE=4 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 1.9e-09
Identity = 37/57 (64.91%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+NFVCLHCV PSLRPLS+AMSTVAIH               IFGDVPS+PLVGVV+
Sbjct: 420 PVNFVCLHCVKPSLRPLSMAMSTVAIH---------------IFGDVPSAPLVGVVQ 461

[Close]

BLAST of Cp4.1LG15g04020.1 vs. TrEMBL
Match: G7IFA8_MEDTR (Sphingolipid transporter spinster-like protein, putative OS=Medicago truncatula GN=MTR_2g010350 PE=4 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 3.3e-09
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+N+VCLHCV PSLRPLSIAMSTVAIH               +FGDVPSSPLVGV++
Sbjct: 387 PVNYVCLHCVKPSLRPLSIAMSTVAIH---------------LFGDVPSSPLVGVLQ 428

[Close]

BLAST of Cp4.1LG15g04020.1 vs. TrEMBL
Match: D7U5L7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0282g00040 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.3e-09
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+N+VCLHCV PSLRPLS+AMSTVAIH               IFGDVPSSPLVGV++
Sbjct: 318 PVNYVCLHCVKPSLRPLSMAMSTVAIH---------------IFGDVPSSPLVGVLQ 359

[Close]

BLAST of Cp4.1LG15g04020.1 vs. TrEMBL
Match: V7CM31_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G216300g PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.3e-09
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+N+VCLHCV PSLRPLS+A+STVAIH               IFGDVPSSPLVGVV+
Sbjct: 430 PVNYVCLHCVKPSLRPLSMALSTVAIH---------------IFGDVPSSPLVGVVQ 471

[Close]

BLAST of Cp4.1LG15g04020.1 vs. TrEMBL
Match: A0A151S0Y6_CAJCA (Protein spinster isogeny 1 OS=Cajanus cajan GN=KK1_029859 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.3e-09
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+N+VCLHCV PSLRPLS+AMSTVAIH               IFGDVPSSPLVGV++
Sbjct: 420 PVNYVCLHCVKPSLRPLSMAMSTVAIH---------------IFGDVPSSPLVGVLQ 461

[Close]

BLAST of Cp4.1LG15g04020.1 vs. TAIR10
Match: AT2G22730.1 (AT2G22730.1 Major facilitator superfamily protein)

HSP 1 Score: 67.4 bits (163), Expect = 3.7e-12
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+N+VCLHCV PSLRPLS+A+STVAIH               IFGDVPSSPLVG+V+
Sbjct: 410 PVNYVCLHCVKPSLRPLSMAISTVAIH---------------IFGDVPSSPLVGIVQ 451

[Close]

BLAST of Cp4.1LG15g04020.1 vs. TAIR10
Match: AT5G64500.1 (AT5G64500.1 Major facilitator superfamily protein)

HSP 1 Score: 62.8 bits (151), Expect = 9.2e-11
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 1


Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+NF+ LHCV PSLRPL++AMSTV+IH               IFGDVPSSPLVGV++
Sbjct: 385 PVNFIVLHCVKPSLRPLAMAMSTVSIH---------------IFGDVPSSPLVGVLQ 426

[Close]

BLAST of Cp4.1LG15g04020.1 vs. TAIR10
Match: AT5G65687.1 (AT5G65687.1 Major facilitator superfamily protein)

HSP 1 Score: 57.4 bits (137), Expect = 3.8e-09
Identity = 31/57 (54.39%), Postives = 36/57 (63.16%), Query Frame = 1


Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+NFVCLHCV P+LRPLS+A STV IH               I GDVPSSPL G ++
Sbjct: 391 PVNFVCLHCVRPNLRPLSMASSTVLIH---------------ILGDVPSSPLYGKMQ 432

[Close]

BLAST of Cp4.1LG15g04020.1 vs. NCBI nr
Match: gi|922363434|ref|XP_003608336.2| (sphingolipid transporter spinster-like protein, putative [Medicago truncatula])

HSP 1 Score: 69.3 bits (168), Expect = 2.8e-09
Identity = 37/57 (64.91%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+NFVCLHCV PSLRPLS+AMSTVAIH               IFGDVPS+PLVGVV+
Sbjct: 420 PVNFVCLHCVKPSLRPLSMAMSTVAIH---------------IFGDVPSAPLVGVVQ 461

[Close]

BLAST of Cp4.1LG15g04020.1 vs. NCBI nr
Match: gi|502142281|ref|XP_004504880.1| (PREDICTED: probable sphingolipid transporter spinster homolog 2 [Cicer arietinum])

HSP 1 Score: 69.3 bits (168), Expect = 2.8e-09
Identity = 37/57 (64.91%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+N+VCLHCV PSLRPLS+AMSTVAIH               IFGDVPSSPLVGVV+
Sbjct: 426 PVNYVCLHCVKPSLRPLSMAMSTVAIH---------------IFGDVPSSPLVGVVQ 467

[Close]

BLAST of Cp4.1LG15g04020.1 vs. NCBI nr
Match: gi|922385702|ref|XP_003593335.2| (sphingolipid transporter spinster-like protein, putative [Medicago truncatula])

HSP 1 Score: 68.6 bits (166), Expect = 4.7e-09
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+N+VCLHCV PSLRPLSIAMSTVAIH               +FGDVPSSPLVGV++
Sbjct: 387 PVNYVCLHCVKPSLRPLSIAMSTVAIH---------------LFGDVPSSPLVGVLQ 428

[Close]

BLAST of Cp4.1LG15g04020.1 vs. NCBI nr
Match: gi|296088668|emb|CBI38036.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 68.2 bits (165), Expect = 6.2e-09
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+N+VCLHCV PSLRPLS+AMSTVAIH               IFGDVPSSPLVGV++
Sbjct: 318 PVNYVCLHCVKPSLRPLSMAMSTVAIH---------------IFGDVPSSPLVGVLQ 359

[Close]

BLAST of Cp4.1LG15g04020.1 vs. NCBI nr
Match: gi|593792292|ref|XP_007159185.1| (hypothetical protein PHAVU_002G216300g [Phaseolus vulgaris])

HSP 1 Score: 68.2 bits (165), Expect = 6.2e-09
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+N+VCLHCV PSLRPLS+A+STVAIH               IFGDVPSSPLVGVV+
Sbjct: 430 PVNYVCLHCVKPSLRPLSMALSTVAIH---------------IFGDVPSSPLVGVVQ 471

The following BLAST results are available for this feature:

BLAST of Cp4.1LG15g04020.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SPNS3_ARATH	6.6e-11	61.40	Probable sphingolipid transporter spinster homolog 3 OS=Arabidopsis thaliana GN=...	[more]
SPNS2_ARATH	1.6e-09	57.89	Probable sphingolipid transporter spinster homolog 2 OS=Arabidopsis thaliana GN=...	[more]
SPNS1_ARATH	6.8e-08	54.39	Probable sphingolipid transporter spinster homolog 1 OS=Arabidopsis thaliana GN=...	[more]

BLAST of Cp4.1LG15g04020.1 vs. TrEMBL


Match Name	E-value	Identity	Description
G7JTZ9_MEDTR	1.9e-09	64.91	Sphingolipid transporter spinster-like protein, putative OS=Medicago truncatula ...	[more]
G7IFA8_MEDTR	3.3e-09	63.16	Sphingolipid transporter spinster-like protein, putative OS=Medicago truncatula ...	[more]
D7U5L7_VITVI	4.3e-09	63.16	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0282g00040 PE=4 SV=...	[more]
V7CM31_PHAVU	4.3e-09	63.16	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G216300g PE=4 SV=1	[more]
A0A151S0Y6_CAJCA	4.3e-09	63.16	Protein spinster isogeny 1 OS=Cajanus cajan GN=KK1_029859 PE=4 SV=1	[more]

BLAST of Cp4.1LG15g04020.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G22730.1	3.7e-12	61.40	Major facilitator superfamily protein	[more]
AT5G64500.1	9.2e-11	57.89	Major facilitator superfamily protein	[more]
AT5G65687.1	3.8e-09	54.39	Major facilitator superfamily protein	[more]

BLAST of Cp4.1LG15g04020.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|922363434\|ref\|XP_003608336.2\|	2.8e-09	64.91	sphingolipid transporter spinster-like protein, putative [Medicago truncatula]	[more]
gi\|502142281\|ref\|XP_004504880.1\|	2.8e-09	64.91	PREDICTED: probable sphingolipid transporter spinster homolog 2 [Cicer arietinum...	[more]
gi\|922385702\|ref\|XP_003593335.2\|	4.7e-09	63.16	sphingolipid transporter spinster-like protein, putative [Medicago truncatula]	[more]
gi\|296088668\|emb\|CBI38036.3\|	6.2e-09	63.16	unnamed protein product [Vitis vinifera]	[more]
gi\|593792292\|ref\|XP_007159185.1\|	6.2e-09	63.16	hypothetical protein PHAVU_002G216300g [Phaseolus vulgaris]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006629	lipid metabolic process
biological_process	GO:0044763	single-organism cellular process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG15g04020	Cp4.1LG15g04020	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG15g04020.1:cds:001	Cp4.1LG15g04020.1:cds:001	CDS
Cp4.1LG15g04020.1:cds:002	Cp4.1LG15g04020.1:cds:002	CDS
Cp4.1LG15g04020.1:cds:003	Cp4.1LG15g04020.1:cds:003	CDS
Cp4.1LG15g04020.1:cds:004	Cp4.1LG15g04020.1:cds:004	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG15g04020.1	Cp4.1LG15g04020.1-protein	polypeptide