Cp4.1LG15g04020 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG15g04020
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Major facilitator superfamily protein isoform 1
Location	Cp4.1LG15 : 5188239 .. 5188868 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTATAGCCTACTTCTATCTGACATGACATTAGTAAAGACATAGTGATCCATATTCATCTCAGGATAAAAAGGAGATCGACCTTCCGGAGTATAAAGACCAGCCAATTATAAACTTCACTACGGAGTCAAATTAAGAAAGTTAGAATGTCATGTAATTTTGTATGCATAGTGTAAGGATTGACCAAACCCAAAAGCCTAAGCTAATGTGTTAGTCTATATTTAATATTTTTGTATCTATTCTTTAGCTAATTACTTCTCTTGTTGCAGAGGGTCCGATAAACTTCGTGTGCCTACATTGCATGATGACTAGTCTAAGGCCGCTTTCTATAGCTATGTTCACAGTCGCAATTCACATCTCCCGATAAACTTCGTGTGCCTACATTGCGTGACGCCTAGTCTAAGGCCGCTTTCTATCGCTATGTCCACAGTTGCAATTCACATCTCCCGGTAAACTTCGTGTGTCTACATTGCGTGACGCCTAGTCTAAGGCCGCTTTCTATGTCTATGTCGACAATTGCAATTCAAATTTTTGGAGATGTGCCATCTTCGCCTCTGGTTGGAGTTGTCGAGGTTAGTTGTTTAGAAGTTAAGTCTATTCTATATATTTTTAGTTAAAAGTTTTAA

mRNA sequence

ATGAATCGCAATTCACATCTCCCGATAAACTTCGTGTGCCTACATTGCGTGACGCCTAGTCTAAGGCCGCTTTCTATCGCTATGTCCACAGTTGCAATTCACATCTCCCGGCCGCTTTCTATGTCTATGTCGACAATTGCAATTCAAATTTTTGGAGATGTGCCATCTTCGCCTCTGGTTGGAGTTGTCGAGTTTTAA

Coding sequence (CDS)

ATGAATCGCAATTCACATCTCCCGATAAACTTCGTGTGCCTACATTGCGTGACGCCTAGTCTAAGGCCGCTTTCTATCGCTATGTCCACAGTTGCAATTCACATCTCCCGGCCGCTTTCTATGTCTATGTCGACAATTGCAATTCAAATTTTTGGAGATGTGCCATCTTCGCCTCTGGTTGGAGTTGTCGAGTTTTAA

Protein sequence

MNRNSHLPINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVEF

Homology

[Close]

BLAST of Cp4.1LG15g04020 vs. Swiss-Prot
Match: SPNS3_ARATH (Probable sphingolipid transporter spinster homolog 3 OS=Arabidopsis thaliana GN=At2g22730 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.6e-11
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+N+VCLHCV PSLRPLS+A+STVAIH               IFGDVPSSPLVG+V+
Sbjct: 410 PVNYVCLHCVKPSLRPLSMAISTVAIH---------------IFGDVPSSPLVGIVQ 451

[Close]

BLAST of Cp4.1LG15g04020 vs. Swiss-Prot
Match: SPNS2_ARATH (Probable sphingolipid transporter spinster homolog 2 OS=Arabidopsis thaliana GN=At5g64500 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-09
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 1


Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+NF+ LHCV PSLRPL++AMSTV+IH               IFGDVPSSPLVGV++
Sbjct: 385 PVNFIVLHCVKPSLRPLAMAMSTVSIH---------------IFGDVPSSPLVGVLQ 426

[Close]

BLAST of Cp4.1LG15g04020 vs. Swiss-Prot
Match: SPNS1_ARATH (Probable sphingolipid transporter spinster homolog 1 OS=Arabidopsis thaliana GN=At5g65687 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 6.8e-08
Identity = 31/57 (54.39%), Postives = 36/57 (63.16%), Query Frame = 1


Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+NFVCLHCV P+LRPLS+A STV IH               I GDVPSSPL G ++
Sbjct: 391 PVNFVCLHCVRPNLRPLSMASSTVLIH---------------ILGDVPSSPLYGKMQ 432

[Close]

BLAST of Cp4.1LG15g04020 vs. TrEMBL
Match: G7JTZ9_MEDTR (Sphingolipid transporter spinster-like protein, putative OS=Medicago truncatula GN=MTR_4g092770 PE=4 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 1.9e-09
Identity = 37/57 (64.91%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+NFVCLHCV PSLRPLS+AMSTVAIH               IFGDVPS+PLVGVV+
Sbjct: 420 PVNFVCLHCVKPSLRPLSMAMSTVAIH---------------IFGDVPSAPLVGVVQ 461

[Close]

BLAST of Cp4.1LG15g04020 vs. TrEMBL
Match: G7IFA8_MEDTR (Sphingolipid transporter spinster-like protein, putative OS=Medicago truncatula GN=MTR_2g010350 PE=4 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 3.3e-09
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+N+VCLHCV PSLRPLSIAMSTVAIH               +FGDVPSSPLVGV++
Sbjct: 387 PVNYVCLHCVKPSLRPLSIAMSTVAIH---------------LFGDVPSSPLVGVLQ 428

[Close]

BLAST of Cp4.1LG15g04020 vs. TrEMBL
Match: D7U5L7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0282g00040 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.3e-09
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+N+VCLHCV PSLRPLS+AMSTVAIH               IFGDVPSSPLVGV++
Sbjct: 318 PVNYVCLHCVKPSLRPLSMAMSTVAIH---------------IFGDVPSSPLVGVLQ 359

[Close]

BLAST of Cp4.1LG15g04020 vs. TrEMBL
Match: V7CM31_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G216300g PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.3e-09
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+N+VCLHCV PSLRPLS+A+STVAIH               IFGDVPSSPLVGVV+
Sbjct: 430 PVNYVCLHCVKPSLRPLSMALSTVAIH---------------IFGDVPSSPLVGVVQ 471

[Close]

BLAST of Cp4.1LG15g04020 vs. TrEMBL
Match: A0A151S0Y6_CAJCA (Protein spinster isogeny 1 OS=Cajanus cajan GN=KK1_029859 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.3e-09
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+N+VCLHCV PSLRPLS+AMSTVAIH               IFGDVPSSPLVGV++
Sbjct: 420 PVNYVCLHCVKPSLRPLSMAMSTVAIH---------------IFGDVPSSPLVGVLQ 461

[Close]

BLAST of Cp4.1LG15g04020 vs. TAIR10
Match: AT2G22730.1 (AT2G22730.1 Major facilitator superfamily protein)

HSP 1 Score: 67.4 bits (163), Expect = 3.7e-12
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+N+VCLHCV PSLRPLS+A+STVAIH               IFGDVPSSPLVG+V+
Sbjct: 410 PVNYVCLHCVKPSLRPLSMAISTVAIH---------------IFGDVPSSPLVGIVQ 451

[Close]

BLAST of Cp4.1LG15g04020 vs. TAIR10
Match: AT5G64500.1 (AT5G64500.1 Major facilitator superfamily protein)

HSP 1 Score: 62.8 bits (151), Expect = 9.2e-11
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 1


Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+NF+ LHCV PSLRPL++AMSTV+IH               IFGDVPSSPLVGV++
Sbjct: 385 PVNFIVLHCVKPSLRPLAMAMSTVSIH---------------IFGDVPSSPLVGVLQ 426

[Close]

BLAST of Cp4.1LG15g04020 vs. TAIR10
Match: AT5G65687.1 (AT5G65687.1 Major facilitator superfamily protein)

HSP 1 Score: 57.4 bits (137), Expect = 3.8e-09
Identity = 31/57 (54.39%), Postives = 36/57 (63.16%), Query Frame = 1


Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+NFVCLHCV P+LRPLS+A STV IH               I GDVPSSPL G ++
Sbjct: 391 PVNFVCLHCVRPNLRPLSMASSTVLIH---------------ILGDVPSSPLYGKMQ 432

[Close]

BLAST of Cp4.1LG15g04020 vs. NCBI nr
Match: gi|922363434|ref|XP_003608336.2| (sphingolipid transporter spinster-like protein, putative [Medicago truncatula])

HSP 1 Score: 69.3 bits (168), Expect = 2.8e-09
Identity = 37/57 (64.91%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+NFVCLHCV PSLRPLS+AMSTVAIH               IFGDVPS+PLVGVV+
Sbjct: 420 PVNFVCLHCVKPSLRPLSMAMSTVAIH---------------IFGDVPSAPLVGVVQ 461

[Close]

BLAST of Cp4.1LG15g04020 vs. NCBI nr
Match: gi|502142281|ref|XP_004504880.1| (PREDICTED: probable sphingolipid transporter spinster homolog 2 [Cicer arietinum])

HSP 1 Score: 69.3 bits (168), Expect = 2.8e-09
Identity = 37/57 (64.91%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+N+VCLHCV PSLRPLS+AMSTVAIH               IFGDVPSSPLVGVV+
Sbjct: 426 PVNYVCLHCVKPSLRPLSMAMSTVAIH---------------IFGDVPSSPLVGVVQ 467

[Close]

BLAST of Cp4.1LG15g04020 vs. NCBI nr
Match: gi|922385702|ref|XP_003593335.2| (sphingolipid transporter spinster-like protein, putative [Medicago truncatula])

HSP 1 Score: 68.6 bits (166), Expect = 4.7e-09
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+N+VCLHCV PSLRPLSIAMSTVAIH               +FGDVPSSPLVGV++
Sbjct: 387 PVNYVCLHCVKPSLRPLSIAMSTVAIH---------------LFGDVPSSPLVGVLQ 428

[Close]

BLAST of Cp4.1LG15g04020 vs. NCBI nr
Match: gi|296088668|emb|CBI38036.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 68.2 bits (165), Expect = 6.2e-09
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+N+VCLHCV PSLRPLS+AMSTVAIH               IFGDVPSSPLVGV++
Sbjct: 318 PVNYVCLHCVKPSLRPLSMAMSTVAIH---------------IFGDVPSSPLVGVLQ 359

[Close]

BLAST of Cp4.1LG15g04020 vs. NCBI nr
Match: gi|593792292|ref|XP_007159185.1| (hypothetical protein PHAVU_002G216300g [Phaseolus vulgaris])

HSP 1 Score: 68.2 bits (165), Expect = 6.2e-09
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+N+VCLHCV PSLRPLS+A+STVAIH               IFGDVPSSPLVGVV+
Sbjct: 430 PVNYVCLHCVKPSLRPLSMALSTVAIH---------------IFGDVPSSPLVGVVQ 471

The following BLAST results are available for this feature:

BLAST of Cp4.1LG15g04020 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SPNS3_ARATH	6.6e-11	61.40	Probable sphingolipid transporter spinster homolog 3 OS=Arabidopsis thaliana GN=...	[more]
SPNS2_ARATH	1.6e-09	57.89	Probable sphingolipid transporter spinster homolog 2 OS=Arabidopsis thaliana GN=...	[more]
SPNS1_ARATH	6.8e-08	54.39	Probable sphingolipid transporter spinster homolog 1 OS=Arabidopsis thaliana GN=...	[more]

BLAST of Cp4.1LG15g04020 vs. TrEMBL


Match Name	E-value	Identity	Description
G7JTZ9_MEDTR	1.9e-09	64.91	Sphingolipid transporter spinster-like protein, putative OS=Medicago truncatula ...	[more]
G7IFA8_MEDTR	3.3e-09	63.16	Sphingolipid transporter spinster-like protein, putative OS=Medicago truncatula ...	[more]
D7U5L7_VITVI	4.3e-09	63.16	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0282g00040 PE=4 SV=...	[more]
V7CM31_PHAVU	4.3e-09	63.16	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G216300g PE=4 SV=1	[more]
A0A151S0Y6_CAJCA	4.3e-09	63.16	Protein spinster isogeny 1 OS=Cajanus cajan GN=KK1_029859 PE=4 SV=1	[more]

BLAST of Cp4.1LG15g04020 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G22730.1	3.7e-12	61.40	Major facilitator superfamily protein	[more]
AT5G64500.1	9.2e-11	57.89	Major facilitator superfamily protein	[more]
AT5G65687.1	3.8e-09	54.39	Major facilitator superfamily protein	[more]

BLAST of Cp4.1LG15g04020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|922363434\|ref\|XP_003608336.2\|	2.8e-09	64.91	sphingolipid transporter spinster-like protein, putative [Medicago truncatula]	[more]
gi\|502142281\|ref\|XP_004504880.1\|	2.8e-09	64.91	PREDICTED: probable sphingolipid transporter spinster homolog 2 [Cicer arietinum...	[more]
gi\|922385702\|ref\|XP_003593335.2\|	4.7e-09	63.16	sphingolipid transporter spinster-like protein, putative [Medicago truncatula]	[more]
gi\|296088668\|emb\|CBI38036.3\|	6.2e-09	63.16	unnamed protein product [Vitis vinifera]	[more]
gi\|593792292\|ref\|XP_007159185.1\|	6.2e-09	63.16	hypothetical protein PHAVU_002G216300g [Phaseolus vulgaris]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006629	lipid metabolic process
biological_process	GO:0044763	single-organism cellular process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG15g04020.1	Cp4.1LG15g04020.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG15g04020	Cucumber (Chinese Long) v3	cpecucB0323
Cp4.1LG15g04020	Cucumber (Chinese Long) v3	cpecucB0329
Cp4.1LG15g04020	Wax gourd	cpewgoB0311
Cp4.1LG15g04020	Wax gourd	cpewgoB0317
Cp4.1LG15g04020	Cucurbita pepo (Zucchini)	cpecpeB111
Cp4.1LG15g04020	Cucurbita pepo (Zucchini)	cpecpeB260
Cp4.1LG15g04020	Cucurbita pepo (Zucchini)	cpecpeB269
Cp4.1LG15g04020	Cucumber (Gy14) v1	cgycpeB0594
Cp4.1LG15g04020	Cucumber (Gy14) v1	cgycpeB0596
Cp4.1LG15g04020	Cucurbita maxima (Rimu)	cmacpeB116
Cp4.1LG15g04020	Cucurbita maxima (Rimu)	cmacpeB522
Cp4.1LG15g04020	Cucurbita maxima (Rimu)	cmacpeB719
Cp4.1LG15g04020	Cucurbita moschata (Rifu)	cmocpeB095
Cp4.1LG15g04020	Cucurbita moschata (Rifu)	cmocpeB481
Cp4.1LG15g04020	Cucurbita moschata (Rifu)	cmocpeB672
Cp4.1LG15g04020	Wild cucumber (PI 183967)	cpecpiB258
Cp4.1LG15g04020	Wild cucumber (PI 183967)	cpecpiB264
Cp4.1LG15g04020	Cucumber (Chinese Long) v2	cpecuB258
Cp4.1LG15g04020	Cucumber (Chinese Long) v2	cpecuB264
Cp4.1LG15g04020	Bottle gourd (USVL1VR-Ls)	cpelsiB207
Cp4.1LG15g04020	Bottle gourd (USVL1VR-Ls)	cpelsiB208
Cp4.1LG15g04020	Watermelon (Charleston Gray)	cpewcgB223
Cp4.1LG15g04020	Watermelon (97103) v1	cpewmB242
Cp4.1LG15g04020	Melon (DHL92) v3.5.1	cpemeB219
Cp4.1LG15g04020	Melon (DHL92) v3.5.1	cpemeB225
Cp4.1LG15g04020	Melon (DHL92) v3.5.1	cpemeB242
Cp4.1LG15g04020	Cucumber (Gy14) v2	cgybcpeB911
Cp4.1LG15g04020	Cucumber (Gy14) v2	cgybcpeB917
Cp4.1LG15g04020	Melon (DHL92) v3.6.1	cpemedB258
Cp4.1LG15g04020	Melon (DHL92) v3.6.1	cpemedB263
Cp4.1LG15g04020	Melon (DHL92) v3.6.1	cpemedB286
Cp4.1LG15g04020	Silver-seed gourd	carcpeB0526
Cp4.1LG15g04020	Silver-seed gourd	carcpeB0637
Cp4.1LG15g04020	Silver-seed gourd	carcpeB1031