Cp4.1LG15g01650.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG15g01650.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG15 : 1288489 .. 1291739 (+)
Sequence length465
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTGTGGATGATATGCTTAGTTTTGATTAGCATGGTGGTGATGGCCCGAGCAGATGAAGAGGAGAGTAAACCCATTGAGTTTTTGAATTGCAATCAACCAAAGCCTCCTCCGGCTTGCCTTGAAATAACACATAGGAGATTTCCCCGCCCTCCCCTAAATGATGATCGTGGTTGCAACGCAATTACCCGTTGTCGTGGAGGAATTGGATCAGGTAGACCACCACCACACATTTGATTACCTTTTTGCCGATCTTGTAAAGGCAAAGTTATATACATAATTATATTTATGTATCTGCTCGATCCTATTACTTAATAATAATATACCTCATTATCACCAGTTTCACCTCTTTATTCGGTATTTTTTAGTTTTTTCATTTTACATTTAAAAATATGACTAAATTAATAAAAATATATAATAAAATATATATATATATATATATATCAAAAATTTTAAAAAAATATTAAATTTTTAAAAAATTTATGAATAATACCGTTTATTTATCTAATTTTAGTAAAATAGTAAAGGAAAATTTTTATCAAAAAAATTATTGGAAATAAAATATACCAAGAAAATGAAATTTTCAAAAATTAAAAAAAAGGAAAAAAATTGTATTTAAAAAAAAATCTGGAGAGAGAAAAAAATGATAATTTACTTTAATTTTTTTCTTATTAGAAAATTTTGATTTGGATTAAAAAGAGAAAAAAATACTAAAAATAAATAACATTTAAGTTAACTCTATAATCTACGGCCCTCTTTGCAATTATCTGCTTTTATCCTCACGGTCCCTCACGGTCAAAGTCACTATCTTTATCCTCACATTATTTAACAAACCTAAGCAAACAATAGTAGCGAGATTCAAAAAACGAAAAGGAGGCAGTAAGGAAAAGGAGGCAGCGAGATTCAAAAAAAGGAGATTGGTTCCCGAGATTCAAAAAAAGGAGGTTGGTTCCCGAGATTCAAGAAAAGGATGTTCGAACTACACTCCCTCCCTCTTTCCTTGAATTAATAGCTGAAGAATGAGTCCTAATAACTGGGGTATGTTATTGACAGCATCCAAATTTCATCACTTTCATACATTGACATGACATAACATAAAATCATATATCATAATATAATATTCAAGCATATGACACATGTAGGGGCCACCATACCATAACATAACATTGTTATCGGTATGGCAACCCTAGAGGGGTGAATGGAGTTTTAATGATAAAAGTGTTTAAAGGTGATTAATTTTTCGAAACTTTTTACGAAGTAAAAAACGATAATTAGTAGAACAAAATAAAGTCAAAACAATAATCAGGTAGAAAAAATCACAATAATAATTTTGAAATTAAATAGGAAAGAGTTAGAAAAGACAGTTTATAGTGGTTTGGTCAAACTCGACCTACTCCACTCCCTAAACACCTCTTGGGAAATTGAATAAACAATTTTCTCGACTCTTTCCACGAATCAGAGTCAAACCGCTACACCGCTCTTTTTACGAATAGTGGTTCGGTCAAACTCGACCTACTCCACTCCCCAAGCACCTCTTGGGAATTTGAATAAACAATTTTCTCGACTCTTTCCACGAATCAGAGCCAAACCGCCACACCGCTCTTTTTACGAATGGTGGTTCGGTCAAACTCGACCTACTTCACTCCCCAAGCACCTCTTGGGAATTTGAATAAACAATTTTCTCGACTCTTTCCACGAATCAGAGCCAAACCGCCACACCGCTCTTTTTACGAATGGTGGTTCGGTCAAACTCGACCTACTTCACTCCCCAAGCACCTCTTGGGAATTTGAATAAACAATTTTCTCGACTCTTTCCACGAATCAGAGCCAAACCGCCACACCGCTCTTTTTACGAATGGTGGTTCGGTCAAACTCGACCTACTTCACTCCCCAAGCACCTCTTGGGAATTTGAATAAACAATTTTCTCGACTCTTTCCACGAATCAGAGCCAAACCGCCACACCGCTCTTTTTACGAATGGTGGTTCGGTCAAACTCGACCTACTTCACTCCCCAAGCACCTCTTGGGAATTTGAATAAACAATTTTCTGACTCTTTCCACGAATCAGAGCCAAACCGCTACACCGCTCTTTTTACGAGTTCAAGAGCAAACTCAATCCTTTCCACGGCAGATCAAACCGATACAAATATTTGAGTTTGATAGTAACACAACTCTCTCAAAGAGTAGATTTACAATTTGGAACACTCACAAACAATACAATAATAATCCCTCTCAAGAATAAGATGAAAGAAATAAACTTAATAATCTCTCTCAAGAATAAGATGAAAGAAATAAACTTAATAATCTCTCAAGAATAAGATGAAGAGAAATAAACTTGTAAGGTTGGAGAGAACAAGAGTTTATATAGGAGAGAAAAGTGTCAAAAATGTAAGAATTAATATTGACCATTGGATTGTGTTAGGAAAAATGTAAGAATTAATATTGACCATTGGATTGTGTTAGGAATAATGTAAGAATTAATATTGACCATTGGATTGTGTTAGGAATAATGGAAGGTGGGGATTAAAAATAAATAAATAAGAAATTTTTTTAAATTCATTTATTTAAATTTTTTAATATAATAATAATAAAAAGTTAGTGAGTAAGGGTCAAATGAAAATTCAAAATTTATTATAAGTATAATAATATAATAATAATAAAAACTATGTGAGTAACTACAAAAATTTTAAAATATAATAATATAATAATATAATATAGTAATAATAAAAATCGATATGAGTAACGGTTAGATTTAAATTTATATTTTGTAAAAATAATTTTATTTAAAAATATAATAATAAGAAAAACTCTACCATTTGTTACTCAGTTGAATTTATCCATTTTTAGATCTCCAAATTTAACTATTTACTAAATTTATGAATTTTCTGTTAAATTTATCATTTTAAAAAACATATAAATAGGGAAAGAAATGGAAAAAAAAAAATACAAATCATCCACAGCTCATCAAAAATAAATAAATAAAATAAAATTTCTTTTTAGAAATTTCGATGAAGTTGTGGATGATATGCTTAGTTTTGATTAGCATGGTGGTGATGGCCCGAGCAGATGAAGAGGAGAGTAAACCCATTGAGTTTTTGAATTGCAATCAACCAAAGCCTCCTCCGGCTTGCCTTGAAATAACACATAGGAGATTTCCCCGCCCTCCCCTAAATGATGATCGTGGTTGCAACGCAATTACCCGTTGTCGTGGAGGAATTGGATCAGGTAGACCACCACCACACATTTGA

mRNA sequence

ATGAAGTTGTGGATGATATGCTTAGTTTTGATTAGCATGGTGGTGATGGCCCGAGCAGATGAAGAGGAGAGTAAACCCATTGAGTTTTTGAATTGCAATCAACCAAAGCCTCCTCCGGCTTGCCTTGAAATAACACATAGGAGATTTCCCCGCCCTCCCCTAAATGATGATCGTGGTTGCAACGCAATTACCCGTTGTCGTGGAGGAATTGGATCAGAAATTTCGATGAAGTTGTGGATGATATGCTTAGTTTTGATTAGCATGGTGGTGATGGCCCGAGCAGATGAAGAGGAGAGTAAACCCATTGAGTTTTTGAATTGCAATCAACCAAAGCCTCCTCCGGCTTGCCTTGAAATAACACATAGGAGATTTCCCCGCCCTCCCCTAAATGATGATCGTGGTTGCAACGCAATTACCCGTTGTCGTGGAGGAATTGGATCAGGTAGACCACCACCACACATTTGA

Coding sequence (CDS)

ATGAAGTTGTGGATGATATGCTTAGTTTTGATTAGCATGGTGGTGATGGCCCGAGCAGATGAAGAGGAGAGTAAACCCATTGAGTTTTTGAATTGCAATCAACCAAAGCCTCCTCCGGCTTGCCTTGAAATAACACATAGGAGATTTCCCCGCCCTCCCCTAAATGATGATCGTGGTTGCAACGCAATTACCCGTTGTCGTGGAGGAATTGGATCAGAAATTTCGATGAAGTTGTGGATGATATGCTTAGTTTTGATTAGCATGGTGGTGATGGCCCGAGCAGATGAAGAGGAGAGTAAACCCATTGAGTTTTTGAATTGCAATCAACCAAAGCCTCCTCCGGCTTGCCTTGAAATAACACATAGGAGATTTCCCCGCCCTCCCCTAAATGATGATCGTGGTTGCAACGCAATTACCCGTTGTCGTGGAGGAATTGGATCAGGTAGACCACCACCACACATTTGA

Protein sequence

MKLWMICLVLISMVVMARADEEESKPIEFLNCNQPKPPPACLEITHRRFPRPPLNDDRGCNAITRCRGGIGSEISMKLWMICLVLISMVVMARADEEESKPIEFLNCNQPKPPPACLEITHRRFPRPPLNDDRGCNAITRCRGGIGSGRPPPHI
Homology
[Close]
BLAST of Cp4.1LG15g01650.1 vs. TrEMBL
Match: A0A0A0M0X3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690160 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-06
Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = 1 

Query: 76  MKLWMICLVLISMVVMARADEEESKPIEFLN-CNQPKPPPACLEITHRRFPRPPLNDDRG 135
           MK W+IC+V ISM+VM++    ++  ++F N C+ P PPP+C        P  P   DRG
Sbjct: 1   MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSSKVKDHAPTNPY--DRG 60

Query: 136 CNAITRCRG 144
           C+AI RCRG
Sbjct: 61  CSAIHRCRG 67

[Close]
BLAST of Cp4.1LG15g01650.1 vs. TrEMBL
Match: A0A0A0LI94_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G191310 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.8e-06
Identity = 31/70 (44.29%), Postives = 42/70 (60.00%), Query Frame = 1 

Query: 76  MKLWMICLVLISMVVMARADEEESKPIEFLN-CNQPKPPPACLEITHRRFPRPPLNDDRG 135
           MK W+ICL LI M+V+ +    E+K ++F++ CNQP PPP C          P    +R 
Sbjct: 1   MKSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPNRDKVEEANP---YNRD 60

Query: 136 CNAITRCRGG 145
           C+AI RCRGG
Sbjct: 61  CSAINRCRGG 67

[Close]
BLAST of Cp4.1LG15g01650.1 vs. NCBI nr
Match: gi|700211681|gb|KGN66777.1| (hypothetical protein Csa_1G690160 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06
Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = 1 

Query: 76  MKLWMICLVLISMVVMARADEEESKPIEFLN-CNQPKPPPACLEITHRRFPRPPLNDDRG 135
           MK W+IC+V ISM+VM++    ++  ++F N C+ P PPP+C        P  P   DRG
Sbjct: 1   MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSSKVKDHAPTNPY--DRG 60

Query: 136 CNAITRCRG 144
           C+AI RCRG
Sbjct: 61  CSAIHRCRG 67

[Close]
BLAST of Cp4.1LG15g01650.1 vs. NCBI nr
Match: gi|700206506|gb|KGN61625.1| (hypothetical protein Csa_2G191310 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 4.0e-06
Identity = 31/70 (44.29%), Postives = 42/70 (60.00%), Query Frame = 1 

Query: 76  MKLWMICLVLISMVVMARADEEESKPIEFLN-CNQPKPPPACLEITHRRFPRPPLNDDRG 135
           MK W+ICL LI M+V+ +    E+K ++F++ CNQP PPP C          P    +R 
Sbjct: 1   MKSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPNRDKVEEANP---YNRD 60

Query: 136 CNAITRCRGG 145
           C+AI RCRGG
Sbjct: 61  CSAINRCRGG 67

The following BLAST results are available for this feature:
BLAST of Cp4.1LG15g01650.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG15g01650.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M0X3_CUCSA1.2e-0644.93Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690160 PE=4 SV=1[more]
A0A0A0LI94_CUCSA2.8e-0644.29Uncharacterized protein OS=Cucumis sativus GN=Csa_2G191310 PE=4 SV=1[more]
BLAST of Cp4.1LG15g01650.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG15g01650.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211681|gb|KGN66777.1|1.8e-0644.93hypothetical protein Csa_1G690160 [Cucumis sativus][more]
gi|700206506|gb|KGN61625.1|4.0e-0644.29hypothetical protein Csa_2G191310 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG15g01650Cp4.1LG15g01650gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG15g01650.1:cds:001Cp4.1LG15g01650.1:cds:001CDS
Cp4.1LG15g01650.1:cds:002Cp4.1LG15g01650.1:cds:002CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG15g01650.1Cp4.1LG15g01650.1-proteinpolypeptide