Cp4.1LG15g01650 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG15g01650
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG15 : 1288489 .. 1291739 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTGTGGATGATATGCTTAGTTTTGATTAGCATGGTGGTGATGGCCCGAGCAGATGAAGAGGAGAGTAAACCCATTGAGTTTTTGAATTGCAATCAACCAAAGCCTCCTCCGGCTTGCCTTGAAATAACACATAGGAGATTTCCCCGCCCTCCCCTAAATGATGATCGTGGTTGCAACGCAATTACCCGTTGTCGTGGAGGAATTGGATCAGGTAGACCACCACCACACATTTGATTACCTTTTTGCCGATCTTGTAAAGGCAAAGTTATATACATAATTATATTTATGTATCTGCTCGATCCTATTACTTAATAATAATATACCTCATTATCACCAGTTTCACCTCTTTATTCGGTATTTTTTAGTTTTTTCATTTTACATTTAAAAATATGACTAAATTAATAAAAATATATAATAAAATATATATATATATATATATATCAAAAATTTTAAAAAAATATTAAATTTTTAAAAAATTTATGAATAATACCGTTTATTTATCTAATTTTAGTAAAATAGTAAAGGAAAATTTTTATCAAAAAAATTATTGGAAATAAAATATACCAAGAAAATGAAATTTTCAAAAATTAAAAAAAAGGAAAAAAATTGTATTTAAAAAAAAATCTGGAGAGAGAAAAAAATGATAATTTACTTTAATTTTTTTCTTATTAGAAAATTTTGATTTGGATTAAAAAGAGAAAAAAATACTAAAAATAAATAACATTTAAGTTAACTCTATAATCTACGGCCCTCTTTGCAATTATCTGCTTTTATCCTCACGGTCCCTCACGGTCAAAGTCACTATCTTTATCCTCACATTATTTAACAAACCTAAGCAAACAATAGTAGCGAGATTCAAAAAACGAAAAGGAGGCAGTAAGGAAAAGGAGGCAGCGAGATTCAAAAAAAGGAGATTGGTTCCCGAGATTCAAAAAAAGGAGGTTGGTTCCCGAGATTCAAGAAAAGGATGTTCGAACTACACTCCCTCCCTCTTTCCTTGAATTAATAGCTGAAGAATGAGTCCTAATAACTGGGGTATGTTATTGACAGCATCCAAATTTCATCACTTTCATACATTGACATGACATAACATAAAATCATATATCATAATATAATATTCAAGCATATGACACATGTAGGGGCCACCATACCATAACATAACATTGTTATCGGTATGGCAACCCTAGAGGGGTGAATGGAGTTTTAATGATAAAAGTGTTTAAAGGTGATTAATTTTTCGAAACTTTTTACGAAGTAAAAAACGATAATTAGTAGAACAAAATAAAGTCAAAACAATAATCAGGTAGAAAAAATCACAATAATAATTTTGAAATTAAATAGGAAAGAGTTAGAAAAGACAGTTTATAGTGGTTTGGTCAAACTCGACCTACTCCACTCCCTAAACACCTCTTGGGAAATTGAATAAACAATTTTCTCGACTCTTTCCACGAATCAGAGTCAAACCGCTACACCGCTCTTTTTACGAATAGTGGTTCGGTCAAACTCGACCTACTCCACTCCCCAAGCACCTCTTGGGAATTTGAATAAACAATTTTCTCGACTCTTTCCACGAATCAGAGCCAAACCGCCACACCGCTCTTTTTACGAATGGTGGTTCGGTCAAACTCGACCTACTTCACTCCCCAAGCACCTCTTGGGAATTTGAATAAACAATTTTCTCGACTCTTTCCACGAATCAGAGCCAAACCGCCACACCGCTCTTTTTACGAATGGTGGTTCGGTCAAACTCGACCTACTTCACTCCCCAAGCACCTCTTGGGAATTTGAATAAACAATTTTCTCGACTCTTTCCACGAATCAGAGCCAAACCGCCACACCGCTCTTTTTACGAATGGTGGTTCGGTCAAACTCGACCTACTTCACTCCCCAAGCACCTCTTGGGAATTTGAATAAACAATTTTCTCGACTCTTTCCACGAATCAGAGCCAAACCGCCACACCGCTCTTTTTACGAATGGTGGTTCGGTCAAACTCGACCTACTTCACTCCCCAAGCACCTCTTGGGAATTTGAATAAACAATTTTCTGACTCTTTCCACGAATCAGAGCCAAACCGCTACACCGCTCTTTTTACGAGTTCAAGAGCAAACTCAATCCTTTCCACGGCAGATCAAACCGATACAAATATTTGAGTTTGATAGTAACACAACTCTCTCAAAGAGTAGATTTACAATTTGGAACACTCACAAACAATACAATAATAATCCCTCTCAAGAATAAGATGAAAGAAATAAACTTAATAATCTCTCTCAAGAATAAGATGAAAGAAATAAACTTAATAATCTCTCAAGAATAAGATGAAGAGAAATAAACTTGTAAGGTTGGAGAGAACAAGAGTTTATATAGGAGAGAAAAGTGTCAAAAATGTAAGAATTAATATTGACCATTGGATTGTGTTAGGAAAAATGTAAGAATTAATATTGACCATTGGATTGTGTTAGGAATAATGTAAGAATTAATATTGACCATTGGATTGTGTTAGGAATAATGGAAGGTGGGGATTAAAAATAAATAAATAAGAAATTTTTTTAAATTCATTTATTTAAATTTTTTAATATAATAATAATAAAAAGTTAGTGAGTAAGGGTCAAATGAAAATTCAAAATTTATTATAAGTATAATAATATAATAATAATAAAAACTATGTGAGTAACTACAAAAATTTTAAAATATAATAATATAATAATATAATATAGTAATAATAAAAATCGATATGAGTAACGGTTAGATTTAAATTTATATTTTGTAAAAATAATTTTATTTAAAAATATAATAATAAGAAAAACTCTACCATTTGTTACTCAGTTGAATTTATCCATTTTTAGATCTCCAAATTTAACTATTTACTAAATTTATGAATTTTCTGTTAAATTTATCATTTTAAAAAACATATAAATAGGGAAAGAAATGGAAAAAAAAAAATACAAATCATCCACAGCTCATCAAAAATAAATAAATAAAATAAAATTTCTTTTTAGAAATTTCGATGAAGTTGTGGATGATATGCTTAGTTTTGATTAGCATGGTGGTGATGGCCCGAGCAGATGAAGAGGAGAGTAAACCCATTGAGTTTTTGAATTGCAATCAACCAAAGCCTCCTCCGGCTTGCCTTGAAATAACACATAGGAGATTTCCCCGCCCTCCCCTAAATGATGATCGTGGTTGCAACGCAATTACCCGTTGTCGTGGAGGAATTGGATCAGGTAGACCACCACCACACATTTGA

mRNA sequence

ATGAAGTTGTGGATGATATGCTTAGTTTTGATTAGCATGGTGGTGATGGCCCGAGCAGATGAAGAGGAGAGTAAACCCATTGAGTTTTTGAATTGCAATCAACCAAAGCCTCCTCCGGCTTGCCTTGAAATAACACATAGGAGATTTCCCCGCCCTCCCCTAAATGATGATCGTGGTTGCAACGCAATTACCCGTTGTCGTGGAGGAATTGGATCAGAAATTTCGATGAAGTTGTGGATGATATGCTTAGTTTTGATTAGCATGGTGGTGATGGCCCGAGCAGATGAAGAGGAGAGTAAACCCATTGAGTTTTTGAATTGCAATCAACCAAAGCCTCCTCCGGCTTGCCTTGAAATAACACATAGGAGATTTCCCCGCCCTCCCCTAAATGATGATCGTGGTTGCAACGCAATTACCCGTTGTCGTGGAGGAATTGGATCAGGTAGACCACCACCACACATTTGA

Coding sequence (CDS)

ATGAAGTTGTGGATGATATGCTTAGTTTTGATTAGCATGGTGGTGATGGCCCGAGCAGATGAAGAGGAGAGTAAACCCATTGAGTTTTTGAATTGCAATCAACCAAAGCCTCCTCCGGCTTGCCTTGAAATAACACATAGGAGATTTCCCCGCCCTCCCCTAAATGATGATCGTGGTTGCAACGCAATTACCCGTTGTCGTGGAGGAATTGGATCAGAAATTTCGATGAAGTTGTGGATGATATGCTTAGTTTTGATTAGCATGGTGGTGATGGCCCGAGCAGATGAAGAGGAGAGTAAACCCATTGAGTTTTTGAATTGCAATCAACCAAAGCCTCCTCCGGCTTGCCTTGAAATAACACATAGGAGATTTCCCCGCCCTCCCCTAAATGATGATCGTGGTTGCAACGCAATTACCCGTTGTCGTGGAGGAATTGGATCAGGTAGACCACCACCACACATTTGA

Protein sequence

MKLWMICLVLISMVVMARADEEESKPIEFLNCNQPKPPPACLEITHRRFPRPPLNDDRGCNAITRCRGGIGSEISMKLWMICLVLISMVVMARADEEESKPIEFLNCNQPKPPPACLEITHRRFPRPPLNDDRGCNAITRCRGGIGSGRPPPHI

Homology

[Close]

BLAST of Cp4.1LG15g01650 vs. TrEMBL
Match: A0A0A0M0X3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690160 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-06
Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = 1


Query: 76  MKLWMICLVLISMVVMARADEEESKPIEFLN-CNQPKPPPACLEITHRRFPRPPLNDDRG 135
           MK W+IC+V ISM+VM++    ++  ++F N C+ P PPP+C        P  P   DRG
Sbjct: 1   MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSSKVKDHAPTNPY--DRG 60

Query: 136 CNAITRCRG 144
           C+AI RCRG
Sbjct: 61  CSAIHRCRG 67

[Close]

BLAST of Cp4.1LG15g01650 vs. TrEMBL
Match: A0A0A0LI94_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G191310 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.8e-06
Identity = 31/70 (44.29%), Postives = 42/70 (60.00%), Query Frame = 1


Query: 76  MKLWMICLVLISMVVMARADEEESKPIEFLN-CNQPKPPPACLEITHRRFPRPPLNDDRG 135
           MK W+ICL LI M+V+ +    E+K ++F++ CNQP PPP C          P    +R 
Sbjct: 1   MKSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPNRDKVEEANP---YNRD 60

Query: 136 CNAITRCRGG 145
           C+AI RCRGG
Sbjct: 61  CSAINRCRGG 67

[Close]

BLAST of Cp4.1LG15g01650 vs. NCBI nr
Match: gi|700211681|gb|KGN66777.1| (hypothetical protein Csa_1G690160 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06
Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = 1


Query: 76  MKLWMICLVLISMVVMARADEEESKPIEFLN-CNQPKPPPACLEITHRRFPRPPLNDDRG 135
           MK W+IC+V ISM+VM++    ++  ++F N C+ P PPP+C        P  P   DRG
Sbjct: 1   MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSSKVKDHAPTNPY--DRG 60

Query: 136 CNAITRCRG 144
           C+AI RCRG
Sbjct: 61  CSAIHRCRG 67

[Close]

BLAST of Cp4.1LG15g01650 vs. NCBI nr
Match: gi|700206506|gb|KGN61625.1| (hypothetical protein Csa_2G191310 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 4.0e-06
Identity = 31/70 (44.29%), Postives = 42/70 (60.00%), Query Frame = 1


Query: 76  MKLWMICLVLISMVVMARADEEESKPIEFLN-CNQPKPPPACLEITHRRFPRPPLNDDRG 135
           MK W+ICL LI M+V+ +    E+K ++F++ CNQP PPP C          P    +R 
Sbjct: 1   MKSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPNRDKVEEANP---YNRD 60

Query: 136 CNAITRCRGG 145
           C+AI RCRGG
Sbjct: 61  CSAINRCRGG 67

The following BLAST results are available for this feature:

BLAST of Cp4.1LG15g01650 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG15g01650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0X3_CUCSA	1.2e-06	44.93	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690160 PE=4 SV=1	[more]
A0A0A0LI94_CUCSA	2.8e-06	44.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G191310 PE=4 SV=1	[more]

BLAST of Cp4.1LG15g01650 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG15g01650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211681\|gb\|KGN66777.1\|	1.8e-06	44.93	hypothetical protein Csa_1G690160 [Cucumis sativus]	[more]
gi\|700206506\|gb\|KGN61625.1\|	4.0e-06	44.29	hypothetical protein Csa_2G191310 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG15g01650.1	Cp4.1LG15g01650.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG15g01650	Cucurbita pepo (Zucchini)	cpecpeB273
Cp4.1LG15g01650	Cucumber (Gy14) v1	cgycpeB0399
Cp4.1LG15g01650	Cucurbita maxima (Rimu)	cmacpeB522
Cp4.1LG15g01650	Cucurbita maxima (Rimu)	cmacpeB615
Cp4.1LG15g01650	Cucurbita moschata (Rifu)	cmocpeB481
Cp4.1LG15g01650	Cucurbita moschata (Rifu)	cmocpeB564
Cp4.1LG15g01650	Wild cucumber (PI 183967)	cpecpiB242
Cp4.1LG15g01650	Cucumber (Chinese Long) v2	cpecuB238
Cp4.1LG15g01650	Bottle gourd (USVL1VR-Ls)	cpelsiB209
Cp4.1LG15g01650	Watermelon (Charleston Gray)	cpewcgB240
Cp4.1LG15g01650	Watermelon (97103) v1	cpewmB258
Cp4.1LG15g01650	Melon (DHL92) v3.5.1	cpemeB229
Cp4.1LG15g01650	Cucumber (Gy14) v2	cgybcpeB331
Cp4.1LG15g01650	Melon (DHL92) v3.6.1	cpemedB268
Cp4.1LG15g01650	Silver-seed gourd	carcpeB1094
Cp4.1LG15g01650	Cucumber (Chinese Long) v3	cpecucB0297
Cp4.1LG15g01650	Wax gourd	cpewgoB0327