Cp4.1LG14g07570.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTGTCGTAACTGGTAAGTGTGGGCGTGTACCATATACTCTACACACATCCCATACGTTCGAGTATGGGCTCACCAGCTAGTTCGCACACCGCTGGGCCACTTTCCTTATCCGGTAGGTATACTTTGGGAGCCCCTTATGCCAGAACCCGTTAAAACTAGTAACCATCACGGCAGCGCTATGCAAAGCATAACAATCGTTGTCTTGCCATCGAATGTACGCGTCCGTACCCTCGTGATGGGATAGGGGGTATCCCCCCAGATGCATGAACACACATAATGCATGAGGTCCCCACTACTTCTACATTTATCATTAATGAACATAACCTCCTGTCACGTTCCATGCTTCATGTCCTTCTCATTTTCAATTTACATTTCATACATATTCCTATCGAGGTTATGATTCCAGACAGTTTACCGTATTTCATGTCATACAATTCATGTTGTTTACATTCAAACATTCCATGCAATCATGTCAAAACCATTCAAGAACAACATATCGTTACATGCATTACACATCACATCAGACTAAACAGCATACATAGCATACAGTCACGTTCACATGACTACGCACTTAAGCACAATAATCTAGCATACAATGTATCATATCATAAACAAGTCATAACGTAAACACTTCATAGTCATATATTTCTCTAACTTACAATAGCCTTAACATTCTTATACCTATCACAGACATATCATTACGTAACGTACCTTAGTCATATCATCACAAGAACGTATCCTAACACTATCGTTCTATCAATCTATCACAAACCTATCCCTTTCTACCCATAACCTAACCATATTCTTTCATGAATCTCTTTTATCCATAGCACTCCGTTATGTAACCTAACCTTAACGTTTCATGAATGTATCTTACTCCTATCGTTACATTTCGTTTTGTGCATCCTTCCCGTATCCTATCTCAAACATATCCTTGAGCACATCGTACCATAATTATTATCATACAATCCACATATTATAACATAACATAACATATAGGAAGCATATCGATCCACAGACAATTCACACATATCAATATATATGACACGTGCAGAACCACAGGGCACGTGTCAACATCAAATATAACCATGGCGATAGTAAGGTCACTGACCTGACTAGCTTAAGTCGTTGTCACGAATATATCCTTAATGAAAGTTCGATTTCGTTCTTTGAAATCCAAGTCAACCTATGTGAGTCCATGACATCAGTTTCAAGTTTGAGCTCTATCAAATTATTTCTCTAATTTACATTGGCCATGGTTAAATTCTGATATTTTCTTGTGAGACGAAATTTAATGGAGTTACTTGCGGTCTAATATTTACTGTTTTATTTTTAAATTCTGTTCAACTAATCTTTCCTCAATCTTCTCTCCTCCATAGTTATTTTCATTGGGTAAATAAATTTTCAATCCTGTAAACATTTTCAATTCTGTAAACAAGATATTATTCCAACCCTATATTTATTTTCATTACGTAAATAAATATTATTGGCCGATTGTAGTTATTTTCATTCTGTAAATAAATTTTCAATTCTGTAAACATTTTCAATTCGGTAAACAAGATATTATTCTAACCCTATATTTATTTTCATTACGTAAACAAATATTATTGGCCGATTTTAATCGATTGTTTGGCTACTATCTTACGATTTATAGATCTGCCAACTAAAATTTAGTGATTCTAACCTTATTTCCTATAACTTCAAATGATATTACTCTAACCCTATATTTATTTTCATTTGTAAACAAATATTATTGGCGGATTTTAATAGATTGTTTGGCTACTATCTTATCAATTTATAGATCTGCCAACTAAAATTTTATTGTTTCTAACCTTATTTCCTATGACTTCAAATGCTAACCAAATATCTAATTAATTGAATATGAGATTTGATTATTACAGGATCCAGTAAAATAGCGAAAGAAGATTTGATCCTAAATTAATTTCTTATAACCATAACTTTAAAAGAAAATCTAGGATTTTATCCTAATAACAGACCAAAATCTCTCCAAGTAAATCTGCATCATATCTTTCTGTTCAAACATCATTTTACTTTTTCTCAAATCTGACATTGTTTTCTGTTAATTTTTTTTTGGACTAACTGTGATGCTATGGGGTTGAGGAAAGAGAATGTCTTTGGGATGAGAGGTTAGTGGAGAGAGGTGGGTAAATTTTATTTTTATTTTTATTTTTATGTAATCTTTTTTAGTTATTTATTTGTGAATTATTATTATTACTATTATTACTATTTTGACATATCTATTTTTTTATAATTATTTTTATTTGTTTATTTATTATTATTATTATTATTATTTTTTGGGCTATTACAAAAGTCCAAAGGAAAGATTGTGGCAATTTATAGGTAAGATTAGAGTTTACAAATAGATTATTTACTTAGTATATTTATACTAACAAAAAAATTACTTGTCTTTGTTAGGGGACTACTGATTGATGGTCACCATGGGGAAGCATTGAAGAGCTACGTGGACGTAGATGAGTGTCATCGTGGGGCGTTAATTCTGTGTCATGGGTTATTGTCCTTTAATTTTGTATACTATTCCTTAGTTTTTATTTTGTAATAAACTTTTAAACACTTTGATATGTAACTTTTTTTTGTTTCAATCTTTTAAATGTTCTGACGATTATTTTTTAAGCTTGTACAAAATTTTATCTTATTTATCATAGTTAGTCATATCGCGATCCTTGAGTCAAAATTTCGAAAACTAGGATGGGACATTTGTTTTTGTAGACGTTTGATTATGACATGGAGCCAATCATATACAAATAATAGGGGCTGACTAGTTTAAGAACTACTAGCAAGGAAGTTCTATATTTTTTCCAAGTGGTTGTTATGGCTCCATTGTAAATTAATGGAAATCTCTTAACTTCCCCGGACAAATTTAGTAATCCCTAGAACGGTTAGGAATATAAGAAAGATGTTTTTCCTTAAAAACTTGATTGACATAAATTCAATTACACTAGTTACAATAAAAGAATAAAATCTGAGTTGCCCTTCCTTTTTTGGTGTTAAAATTTTGTTATAAAAATGAAGAAAAGTAGATAACAAAAATCAGGCATCTTAGAGAGAGAAGAGAAAAATGAGTTTGAATTCATGGGATATGGGATGTTTAGTGTTCTTTATCATCTTACTTTCCATTCCTAAATGTTATTCTCAATCTAAAGAGTTCAATATCATCCAATTTGGTGCAATAGCGGATGGAAAAACTGATAGCACGAAGGTAAAATTTTTCTTTCTTATAAATCATAAAAACATCCAAACTCAATTCAAACAACTTAAGAAGCATTAGAAGCATTAATTTAGAAATATCATTTTCAAAATGGGATACATTTTTTTTTTCTTAGTTTTGCTTTAATTTCTATTTCATGTATACAAATATTCAAACCAAATCTTTGAAATGAAAAAATATATATTTTATGTTTAGTAATAAATATCTAAATGTAAATTTAAAATTTAAATTATTTTGGTGAAATTACATGATAAAAGATTACTTGGTTTGTATAGGCACTAAGGGAGGCATGGAGGGAAGCTTGTGGATACAACGGATATGGTGTAGTTTTAGTACCAGAGGGGAGCTTTCTGGTATTACCATTAGTGCTTGAAGGTCCATGCAAAAGATCCATTGGTCTGCATATTAATGGTGAATTGTTGGCTCCTGTCAGCAAGAATTTCGCCACGGGTGAATACTGGTTGAGTATCTCCGATGTCGACAACTTTTTCGTTGCCGGTTCTGGCAGCTTGAACGGCGGCGGTTCTTCAGCTTGGCAATCCGACACTTCTAACCGTCCAATTGTAAGTCCATTTTTATATTTAAGTGATAAAAAAGAAATTGATTTGTTATGTTGATAGTTAAATGATGCTATCATTTTACATTTAAAAGTACACCAAAATATACATATGTATAATCTAACGATTGATTCAATGTAGTCGATGAAACTTTCTGGTGTCAACACTGCGGGAATTTCAAAGATAACATCGTCCAATAGCAAATTATTCCATTTTGGTTTGAATGGATGTCATGATGTCACGTTTGATCACGTTACAATCATAGCTCCGGCAGATAGCCCCAATACAGATGGAATTCACATTTCCGAGTCAAGTGGTATCAATATTATGCATTCAGTGATTGGCACCGGAGACGATTGCATCTCTCTAGGCCCTGGAAGTAAATTCATCAACATAACAGACGTCCAGTGTGGTCCAGGTCATGGAATTAGCATCGGTAGCCTCGGAAAGTACCCAAATGAAGAAGATGTCTCTGAAGTCACAGTAAGAGACTCCACATTTGTTGGCACAGACAACGGTGTGAGGATCAAAACATGGTCAACTTCATTTTCTAGTTCTGTGAGCAAGATCACTTTTCTCAATCTCGAAATGAAGGATGTAAAAAATCCTATTATCATTGATCAAAAATATTGCACTGATTGCGACGAACATAAAATGGTATATATATTTAAATTTGATAATCATTCGATTTTAATAAAACTATAAATGGTGGATGATTCTAAAATAATGTTGTTTGTGGTTGACAGAGTAACTCAAAAGTGCAGATTCACGATGTGAGATATGAAGGCATAAGGGGGAGTTCAACGTCCCAAGTGGCAGTAAATTTTGAATGCAGCCAAGTTCTTCCATGCGAAGGCATAGTGTTACAAGACATTAACCTCTCCTTCAAAGGTGATGGCGAACCAACTTCCATTTGTCACAATGTGAAGGGCTCTGCTTTTGGCAAACAAATTCCTTACTCTTGCCTTTAA ATGCTGTCGGGACTACTGATTGATGGTCACCATGGGGAAGCATTGAAGAGCTACGTGGACGCACTAAGGGAGGCATGGAGGGAAGCTTGTGGATACAACGGATATGGTGTAGTTTTAGTACCAGAGGGGAGCTTTCTGGTATTACCATTAGTGCTTGAAGGTCCATGCAAAAGATCCATTGGTCTGCATATTAATGGTGAATTGTTGGCTCCTGTCAGCAAGAATTTCGCCACGGGTGAATACTGGTTGAGTATCTCCGATGTCGACAACTTTTTCGTTGCCGGTTCTGGCAGCTTGAACGGCGGCGGTTCTTCAGCTTGGCAATCCGACACTTCTAACCGTCCAATTAGTAACTCAAAAGTGCAGATTCACGATGTGAGATATGAAGGCATAAGGGGGAGTTCAACGTCCCAAGTGGCAGTAAATTTTGAATGCAGCCAAGTTCTTCCATGCGAAGGCATAGTGTTACAAGACATTAACCTCTCCTTCAAAGGTGATGGCGAACCAACTTCCATTTGTCACAATGTGAAGGGCTCTGCTTTTGGCAAACAAATTCCTTACTCTTGCCTTTAA ATGCTGTCGGGACTACTGATTGATGGTCACCATGGGGAAGCATTGAAGAGCTACGTGGACGCACTAAGGGAGGCATGGAGGGAAGCTTGTGGATACAACGGATATGGTGTAGTTTTAGTACCAGAGGGGAGCTTTCTGGTATTACCATTAGTGCTTGAAGGTCCATGCAAAAGATCCATTGGTCTGCATATTAATGGTGAATTGTTGGCTCCTGTCAGCAAGAATTTCGCCACGGGTGAATACTGGTTGAGTATCTCCGATGTCGACAACTTTTTCGTTGCCGGTTCTGGCAGCTTGAACGGCGGCGGTTCTTCAGCTTGGCAATCCGACACTTCTAACCGTCCAATTAGTAACTCAAAAGTGCAGATTCACGATGTGAGATATGAAGGCATAAGGGGGAGTTCAACGTCCCAAGTGGCAGTAAATTTTGAATGCAGCCAAGTTCTTCCATGCGAAGGCATAGTGTTACAAGACATTAACCTCTCCTTCAAAGGTGATGGCGAACCAACTTCCATTTGTCACAATGTGAAGGGCTCTGCTTTTGGCAAACAAATTCCTTACTCTTGCCTTTAA MLSGLLIDGHHGEALKSYVDALREAWREACGYNGYGVVLVPEGSFLVLPLVLEGPCKRSIGLHINGELLAPVSKNFATGEYWLSISDVDNFFVAGSGSLNGGGSSAWQSDTSNRPISNSKVQIHDVRYEGIRGSSTSQVAVNFECSQVLPCEGIVLQDINLSFKGDGEPTSICHNVKGSAFGKQIPYSCL
BLAST of Cp4.1LG14g07570.1 vs. Swiss-Prot
Match: PGLR3_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1) HSP 1 Score: 91.3 bits (225), Expect = 1.2e-17 Identity = 48/170 (28.24%), Postives = 81/170 (47.65%), Query Frame = 1
BLAST of Cp4.1LG14g07570.1 vs. Swiss-Prot
Match: PGLR2_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1) HSP 1 Score: 86.3 bits (212), Expect = 4.0e-16 Identity = 46/170 (27.06%), Postives = 80/170 (47.06%), Query Frame = 1
BLAST of Cp4.1LG14g07570.1 vs. Swiss-Prot
Match: PGLR1_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1) HSP 1 Score: 85.5 bits (210), Expect = 6.8e-16 Identity = 46/170 (27.06%), Postives = 80/170 (47.06%), Query Frame = 1
BLAST of Cp4.1LG14g07570.1 vs. Swiss-Prot
Match: PGLR_OENOR (Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 4.4e-15 Identity = 50/147 (34.01%), Postives = 79/147 (53.74%), Query Frame = 1
BLAST of Cp4.1LG14g07570.1 vs. Swiss-Prot
Match: PGLR2_PLAAC (Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 3.8e-14 Identity = 45/158 (28.48%), Postives = 84/158 (53.16%), Query Frame = 1
BLAST of Cp4.1LG14g07570.1 vs. TrEMBL
Match: A0A0A0L7H9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G063610 PE=3 SV=1) HSP 1 Score: 126.7 bits (317), Expect = 3.0e-26 Identity = 62/125 (49.60%), Postives = 85/125 (68.00%), Query Frame = 1
BLAST of Cp4.1LG14g07570.1 vs. TrEMBL
Match: A0A0A0L660_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G063620 PE=3 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 4.0e-23 Identity = 54/75 (72.00%), Postives = 64/75 (85.33%), Query Frame = 1
BLAST of Cp4.1LG14g07570.1 vs. TrEMBL
Match: U5FG24_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0019s09510g PE=3 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 7.4e-17 Identity = 51/163 (31.29%), Postives = 86/163 (52.76%), Query Frame = 1
BLAST of Cp4.1LG14g07570.1 vs. TrEMBL
Match: U5FEM3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s09500g PE=3 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 7.4e-17 Identity = 51/163 (31.29%), Postives = 86/163 (52.76%), Query Frame = 1
BLAST of Cp4.1LG14g07570.1 vs. TrEMBL
Match: A0A077B569_SORHL (Group 13 allergen Sor h 13.02 OS=Sorghum halepense PE=3 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 7.4e-17 Identity = 49/169 (28.99%), Postives = 83/169 (49.11%), Query Frame = 1
BLAST of Cp4.1LG14g07570.1 vs. TAIR10
Match: AT1G17150.1 (AT1G17150.1 Pectin lyase-like superfamily protein) HSP 1 Score: 73.2 bits (178), Expect = 2.0e-13 Identity = 34/76 (44.74%), Postives = 51/76 (67.11%), Query Frame = 1
BLAST of Cp4.1LG14g07570.1 vs. TAIR10
Match: AT2G15450.1 (AT2G15450.1 Pectin lyase-like superfamily protein) HSP 1 Score: 72.8 bits (177), Expect = 2.6e-13 Identity = 34/74 (45.95%), Postives = 48/74 (64.86%), Query Frame = 1
BLAST of Cp4.1LG14g07570.1 vs. TAIR10
Match: AT2G15470.1 (AT2G15470.1 Pectin lyase-like superfamily protein) HSP 1 Score: 72.4 bits (176), Expect = 3.4e-13 Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = 1
BLAST of Cp4.1LG14g07570.1 vs. TAIR10
Match: AT1G78400.1 (AT1G78400.1 Pectin lyase-like superfamily protein) HSP 1 Score: 72.0 bits (175), Expect = 4.4e-13 Identity = 40/119 (33.61%), Postives = 58/119 (48.74%), Query Frame = 1
BLAST of Cp4.1LG14g07570.1 vs. TAIR10
Match: AT3G57510.1 (AT3G57510.1 Pectin lyase-like superfamily protein) HSP 1 Score: 72.0 bits (175), Expect = 4.4e-13 Identity = 43/178 (24.16%), Postives = 81/178 (45.51%), Query Frame = 1
BLAST of Cp4.1LG14g07570.1 vs. NCBI nr
Match: gi|802778727|ref|XP_012091225.1| (PREDICTED: exopolygalacturonase-like [Jatropha curcas]) HSP 1 Score: 129.8 bits (325), Expect = 5.1e-27 Identity = 66/171 (38.60%), Postives = 100/171 (58.48%), Query Frame = 1
BLAST of Cp4.1LG14g07570.1 vs. NCBI nr
Match: gi|700200928|gb|KGN56061.1| (hypothetical protein Csa_3G063610 [Cucumis sativus]) HSP 1 Score: 126.7 bits (317), Expect = 4.3e-26 Identity = 62/125 (49.60%), Postives = 85/125 (68.00%), Query Frame = 1
BLAST of Cp4.1LG14g07570.1 vs. NCBI nr
Match: gi|778688362|ref|XP_011652730.1| (PREDICTED: exopolygalacturonase-like [Cucumis sativus]) HSP 1 Score: 126.7 bits (317), Expect = 4.3e-26 Identity = 62/125 (49.60%), Postives = 85/125 (68.00%), Query Frame = 1
BLAST of Cp4.1LG14g07570.1 vs. NCBI nr
Match: gi|659096624|ref|XP_008449197.1| (PREDICTED: exopolygalacturonase-like [Cucumis melo]) HSP 1 Score: 120.9 bits (302), Expect = 2.3e-24 Identity = 63/125 (50.40%), Postives = 82/125 (65.60%), Query Frame = 1
BLAST of Cp4.1LG14g07570.1 vs. NCBI nr
Match: gi|764522914|ref|XP_011457655.1| (PREDICTED: polygalacturonase-like [Fragaria vesca subsp. vesca]) HSP 1 Score: 119.4 bits (298), Expect = 6.8e-24 Identity = 62/167 (37.13%), Postives = 96/167 (57.49%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
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