Cp4.1LG14g07570 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG14g07570
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPolygalacturonase
LocationCp4.1LG14 : 5946560 .. 5951337 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGTCGTAACTGGTAAGTGTGGGCGTGTACCATATACTCTACACACATCCCATACGTTCGAGTATGGGCTCACCAGCTAGTTCGCACACCGCTGGGCCACTTTCCTTATCCGGTAGGTATACTTTGGGAGCCCCTTATGCCAGAACCCGTTAAAACTAGTAACCATCACGGCAGCGCTATGCAAAGCATAACAATCGTTGTCTTGCCATCGAATGTACGCGTCCGTACCCTCGTGATGGGATAGGGGGTATCCCCCCAGATGCATGAACACACATAATGCATGAGGTCCCCACTACTTCTACATTTATCATTAATGAACATAACCTCCTGTCACGTTCCATGCTTCATGTCCTTCTCATTTTCAATTTACATTTCATACATATTCCTATCGAGGTTATGATTCCAGACAGTTTACCGTATTTCATGTCATACAATTCATGTTGTTTACATTCAAACATTCCATGCAATCATGTCAAAACCATTCAAGAACAACATATCGTTACATGCATTACACATCACATCAGACTAAACAGCATACATAGCATACAGTCACGTTCACATGACTACGCACTTAAGCACAATAATCTAGCATACAATGTATCATATCATAAACAAGTCATAACGTAAACACTTCATAGTCATATATTTCTCTAACTTACAATAGCCTTAACATTCTTATACCTATCACAGACATATCATTACGTAACGTACCTTAGTCATATCATCACAAGAACGTATCCTAACACTATCGTTCTATCAATCTATCACAAACCTATCCCTTTCTACCCATAACCTAACCATATTCTTTCATGAATCTCTTTTATCCATAGCACTCCGTTATGTAACCTAACCTTAACGTTTCATGAATGTATCTTACTCCTATCGTTACATTTCGTTTTGTGCATCCTTCCCGTATCCTATCTCAAACATATCCTTGAGCACATCGTACCATAATTATTATCATACAATCCACATATTATAACATAACATAACATATAGGAAGCATATCGATCCACAGACAATTCACACATATCAATATATATGACACGTGCAGAACCACAGGGCACGTGTCAACATCAAATATAACCATGGCGATAGTAAGGTCACTGACCTGACTAGCTTAAGTCGTTGTCACGAATATATCCTTAATGAAAGTTCGATTTCGTTCTTTGAAATCCAAGTCAACCTATGTGAGTCCATGACATCAGTTTCAAGTTTGAGCTCTATCAAATTATTTCTCTAATTTACATTGGCCATGGTTAAATTCTGATATTTTCTTGTGAGACGAAATTTAATGGAGTTACTTGCGGTCTAATATTTACTGTTTTATTTTTAAATTCTGTTCAACTAATCTTTCCTCAATCTTCTCTCCTCCATAGTTATTTTCATTGGGTAAATAAATTTTCAATCCTGTAAACATTTTCAATTCTGTAAACAAGATATTATTCCAACCCTATATTTATTTTCATTACGTAAATAAATATTATTGGCCGATTGTAGTTATTTTCATTCTGTAAATAAATTTTCAATTCTGTAAACATTTTCAATTCGGTAAACAAGATATTATTCTAACCCTATATTTATTTTCATTACGTAAACAAATATTATTGGCCGATTTTAATCGATTGTTTGGCTACTATCTTACGATTTATAGATCTGCCAACTAAAATTTAGTGATTCTAACCTTATTTCCTATAACTTCAAATGATATTACTCTAACCCTATATTTATTTTCATTTGTAAACAAATATTATTGGCGGATTTTAATAGATTGTTTGGCTACTATCTTATCAATTTATAGATCTGCCAACTAAAATTTTATTGTTTCTAACCTTATTTCCTATGACTTCAAATGCTAACCAAATATCTAATTAATTGAATATGAGATTTGATTATTACAGGATCCAGTAAAATAGCGAAAGAAGATTTGATCCTAAATTAATTTCTTATAACCATAACTTTAAAAGAAAATCTAGGATTTTATCCTAATAACAGACCAAAATCTCTCCAAGTAAATCTGCATCATATCTTTCTGTTCAAACATCATTTTACTTTTTCTCAAATCTGACATTGTTTTCTGTTAATTTTTTTTTGGACTAACTGTGATGCTATGGGGTTGAGGAAAGAGAATGTCTTTGGGATGAGAGGTTAGTGGAGAGAGGTGGGTAAATTTTATTTTTATTTTTATTTTTATGTAATCTTTTTTAGTTATTTATTTGTGAATTATTATTATTACTATTATTACTATTTTGACATATCTATTTTTTTATAATTATTTTTATTTGTTTATTTATTATTATTATTATTATTATTTTTTGGGCTATTACAAAAGTCCAAAGGAAAGATTGTGGCAATTTATAGGTAAGATTAGAGTTTACAAATAGATTATTTACTTAGTATATTTATACTAACAAAAAAATTACTTGTCTTTGTTAGGGGACTACTGATTGATGGTCACCATGGGGAAGCATTGAAGAGCTACGTGGACGTAGATGAGTGTCATCGTGGGGCGTTAATTCTGTGTCATGGGTTATTGTCCTTTAATTTTGTATACTATTCCTTAGTTTTTATTTTGTAATAAACTTTTAAACACTTTGATATGTAACTTTTTTTTGTTTCAATCTTTTAAATGTTCTGACGATTATTTTTTAAGCTTGTACAAAATTTTATCTTATTTATCATAGTTAGTCATATCGCGATCCTTGAGTCAAAATTTCGAAAACTAGGATGGGACATTTGTTTTTGTAGACGTTTGATTATGACATGGAGCCAATCATATACAAATAATAGGGGCTGACTAGTTTAAGAACTACTAGCAAGGAAGTTCTATATTTTTTCCAAGTGGTTGTTATGGCTCCATTGTAAATTAATGGAAATCTCTTAACTTCCCCGGACAAATTTAGTAATCCCTAGAACGGTTAGGAATATAAGAAAGATGTTTTTCCTTAAAAACTTGATTGACATAAATTCAATTACACTAGTTACAATAAAAGAATAAAATCTGAGTTGCCCTTCCTTTTTTGGTGTTAAAATTTTGTTATAAAAATGAAGAAAAGTAGATAACAAAAATCAGGCATCTTAGAGAGAGAAGAGAAAAATGAGTTTGAATTCATGGGATATGGGATGTTTAGTGTTCTTTATCATCTTACTTTCCATTCCTAAATGTTATTCTCAATCTAAAGAGTTCAATATCATCCAATTTGGTGCAATAGCGGATGGAAAAACTGATAGCACGAAGGTAAAATTTTTCTTTCTTATAAATCATAAAAACATCCAAACTCAATTCAAACAACTTAAGAAGCATTAGAAGCATTAATTTAGAAATATCATTTTCAAAATGGGATACATTTTTTTTTTCTTAGTTTTGCTTTAATTTCTATTTCATGTATACAAATATTCAAACCAAATCTTTGAAATGAAAAAATATATATTTTATGTTTAGTAATAAATATCTAAATGTAAATTTAAAATTTAAATTATTTTGGTGAAATTACATGATAAAAGATTACTTGGTTTGTATAGGCACTAAGGGAGGCATGGAGGGAAGCTTGTGGATACAACGGATATGGTGTAGTTTTAGTACCAGAGGGGAGCTTTCTGGTATTACCATTAGTGCTTGAAGGTCCATGCAAAAGATCCATTGGTCTGCATATTAATGGTGAATTGTTGGCTCCTGTCAGCAAGAATTTCGCCACGGGTGAATACTGGTTGAGTATCTCCGATGTCGACAACTTTTTCGTTGCCGGTTCTGGCAGCTTGAACGGCGGCGGTTCTTCAGCTTGGCAATCCGACACTTCTAACCGTCCAATTGTAAGTCCATTTTTATATTTAAGTGATAAAAAAGAAATTGATTTGTTATGTTGATAGTTAAATGATGCTATCATTTTACATTTAAAAGTACACCAAAATATACATATGTATAATCTAACGATTGATTCAATGTAGTCGATGAAACTTTCTGGTGTCAACACTGCGGGAATTTCAAAGATAACATCGTCCAATAGCAAATTATTCCATTTTGGTTTGAATGGATGTCATGATGTCACGTTTGATCACGTTACAATCATAGCTCCGGCAGATAGCCCCAATACAGATGGAATTCACATTTCCGAGTCAAGTGGTATCAATATTATGCATTCAGTGATTGGCACCGGAGACGATTGCATCTCTCTAGGCCCTGGAAGTAAATTCATCAACATAACAGACGTCCAGTGTGGTCCAGGTCATGGAATTAGCATCGGTAGCCTCGGAAAGTACCCAAATGAAGAAGATGTCTCTGAAGTCACAGTAAGAGACTCCACATTTGTTGGCACAGACAACGGTGTGAGGATCAAAACATGGTCAACTTCATTTTCTAGTTCTGTGAGCAAGATCACTTTTCTCAATCTCGAAATGAAGGATGTAAAAAATCCTATTATCATTGATCAAAAATATTGCACTGATTGCGACGAACATAAAATGGTATATATATTTAAATTTGATAATCATTCGATTTTAATAAAACTATAAATGGTGGATGATTCTAAAATAATGTTGTTTGTGGTTGACAGAGTAACTCAAAAGTGCAGATTCACGATGTGAGATATGAAGGCATAAGGGGGAGTTCAACGTCCCAAGTGGCAGTAAATTTTGAATGCAGCCAAGTTCTTCCATGCGAAGGCATAGTGTTACAAGACATTAACCTCTCCTTCAAAGGTGATGGCGAACCAACTTCCATTTGTCACAATGTGAAGGGCTCTGCTTTTGGCAAACAAATTCCTTACTCTTGCCTTTAA

mRNA sequence

ATGCTGTCGGGACTACTGATTGATGGTCACCATGGGGAAGCATTGAAGAGCTACGTGGACGCACTAAGGGAGGCATGGAGGGAAGCTTGTGGATACAACGGATATGGTGTAGTTTTAGTACCAGAGGGGAGCTTTCTGGTATTACCATTAGTGCTTGAAGGTCCATGCAAAAGATCCATTGGTCTGCATATTAATGGTGAATTGTTGGCTCCTGTCAGCAAGAATTTCGCCACGGGTGAATACTGGTTGAGTATCTCCGATGTCGACAACTTTTTCGTTGCCGGTTCTGGCAGCTTGAACGGCGGCGGTTCTTCAGCTTGGCAATCCGACACTTCTAACCGTCCAATTAGTAACTCAAAAGTGCAGATTCACGATGTGAGATATGAAGGCATAAGGGGGAGTTCAACGTCCCAAGTGGCAGTAAATTTTGAATGCAGCCAAGTTCTTCCATGCGAAGGCATAGTGTTACAAGACATTAACCTCTCCTTCAAAGGTGATGGCGAACCAACTTCCATTTGTCACAATGTGAAGGGCTCTGCTTTTGGCAAACAAATTCCTTACTCTTGCCTTTAA

Coding sequence (CDS)

ATGCTGTCGGGACTACTGATTGATGGTCACCATGGGGAAGCATTGAAGAGCTACGTGGACGCACTAAGGGAGGCATGGAGGGAAGCTTGTGGATACAACGGATATGGTGTAGTTTTAGTACCAGAGGGGAGCTTTCTGGTATTACCATTAGTGCTTGAAGGTCCATGCAAAAGATCCATTGGTCTGCATATTAATGGTGAATTGTTGGCTCCTGTCAGCAAGAATTTCGCCACGGGTGAATACTGGTTGAGTATCTCCGATGTCGACAACTTTTTCGTTGCCGGTTCTGGCAGCTTGAACGGCGGCGGTTCTTCAGCTTGGCAATCCGACACTTCTAACCGTCCAATTAGTAACTCAAAAGTGCAGATTCACGATGTGAGATATGAAGGCATAAGGGGGAGTTCAACGTCCCAAGTGGCAGTAAATTTTGAATGCAGCCAAGTTCTTCCATGCGAAGGCATAGTGTTACAAGACATTAACCTCTCCTTCAAAGGTGATGGCGAACCAACTTCCATTTGTCACAATGTGAAGGGCTCTGCTTTTGGCAAACAAATTCCTTACTCTTGCCTTTAA

Protein sequence

MLSGLLIDGHHGEALKSYVDALREAWREACGYNGYGVVLVPEGSFLVLPLVLEGPCKRSIGLHINGELLAPVSKNFATGEYWLSISDVDNFFVAGSGSLNGGGSSAWQSDTSNRPISNSKVQIHDVRYEGIRGSSTSQVAVNFECSQVLPCEGIVLQDINLSFKGDGEPTSICHNVKGSAFGKQIPYSCL
Homology
[Close]
BLAST of Cp4.1LG14g07570 vs. Swiss-Prot
Match: PGLR3_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-17
Identity = 48/170 (28.24%), Postives = 81/170 (47.65%), Query Frame = 1 

Query: 9   GHHGEALKSYVDALREAWREACGYNGYGVVLVPEGSFLVLPLVLEGPCKRSIGLHINGEL 68
           G  G        A++EAW  ACG  G   +L+P+G FLV PL   GPCK  + + +NG L
Sbjct: 47  GASGNGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGPLNFTGPCKGDVTIQVNGNL 106

Query: 69  LAPVS-KNFATGEYWLSISDVDNFFVAGSGSLNGGGSSAWQSDTSNRPISNSKVQIHDVR 128
           LA      +     W+ I  VDN  + G G L+G G + W  ++  +   + K+  + + 
Sbjct: 107 LATTDLSQYKDHGNWIEILRVDNLVITGKGKLDGQGPAVWSKNSCVKKY-DCKILPNSLV 166

Query: 129 YEGIRGSSTSQVAV---NFECSQVLPCEGIVLQDINLSFKGDGEPTSICH 175
            + +     S + +    F    +  C+ ++++D+N++  GD   T   H
Sbjct: 167 MDFVNNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIH 215

[Close]
BLAST of Cp4.1LG14g07570 vs. Swiss-Prot
Match: PGLR2_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.0e-16
Identity = 46/170 (27.06%), Postives = 80/170 (47.06%), Query Frame = 1 

Query: 9   GHHGEALKSYVDALREAWREACGYNGYGVVLVPEGSFLVLPLVLEGPCKRSIGLHINGEL 68
           G  G        A++EAW  ACG  G   +L+P+G FLV  L   GPCK  + + ++G L
Sbjct: 47  GASGNGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGQLNFTGPCKGDVTIQVDGNL 106

Query: 69  LAPVS-KNFATGEYWLSISDVDNFFVAGSGSLNGGGSSAWQSDTSNRPISNSKVQIHDVR 128
           LA      +     W+ I  VDN  + G G+L+G G + W  ++  +   + K+  + + 
Sbjct: 107 LATTDLSQYKEHGNWIEILRVDNLVITGKGNLDGQGPAVWSKNSCTKKY-DCKILPNSLV 166

Query: 129 YEGIRGSSTSQVAV---NFECSQVLPCEGIVLQDINLSFKGDGEPTSICH 175
            + +     S V +    F    +  C+ ++++D+ ++  GD   T   H
Sbjct: 167 MDFVNNGEVSGVTLLNSKFFHMNMYQCKNMLIKDVTVTAPGDSPNTDGIH 215

[Close]
BLAST of Cp4.1LG14g07570 vs. Swiss-Prot
Match: PGLR1_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 6.8e-16
Identity = 46/170 (27.06%), Postives = 80/170 (47.06%), Query Frame = 1 

Query: 9   GHHGEALKSYVDALREAWREACGYNGYGVVLVPEGSFLVLPLVLEGPCKRSIGLHINGEL 68
           G  G        A++EAW  ACG  G   +L+P+G FLV  L   GPCK  + + ++G L
Sbjct: 47  GASGNGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGQLNFTGPCKGDVTIQVDGNL 106

Query: 69  LAPVS-KNFATGEYWLSISDVDNFFVAGSGSLNGGGSSAWQSDTSNRPISNSKVQIHDVR 128
           LA      +     W+ I  VDN  + G G+L+G G + W  ++  +   + K+  + + 
Sbjct: 107 LATTDLSQYKDHGNWIEILRVDNLVITGKGNLDGQGPAVWSKNSCTKKY-DCKILPNSLV 166

Query: 129 YEGIRGSSTSQVAV---NFECSQVLPCEGIVLQDINLSFKGDGEPTSICH 175
            + +     S V +    F    +  C+ ++++D+ ++  GD   T   H
Sbjct: 167 MDFVNNGEVSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTDGIH 215

[Close]
BLAST of Cp4.1LG14g07570 vs. Swiss-Prot
Match: PGLR_OENOR (Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.4e-15
Identity = 50/147 (34.01%), Postives = 79/147 (53.74%), Query Frame = 1 

Query: 21  ALREAWREACGYNGYGVVLVPEGSFLVLPLVLEGPCKRSIGLHINGELLAPVSKNFATGE 80
           AL  AW+EAC       +LVP+G+F V  + LEGPCK SIGL + G L AP   +   G 
Sbjct: 5   ALTTAWKEACASASPSTILVPKGNFAVGLITLEGPCKSSIGLQLQGTLKAPADPSKIKGL 64

Query: 81  YWLSISDVDNFFVAGSGSLNGGGSSAW-QSDT-SNRPISNS---KVQIHDVRYEGIRGSS 140
            W++++ +D   + G G  +G G SAW Q+D   N PI  +    ++++ V    +R  +
Sbjct: 65  GWINLNKIDLLTIFGGGVFDGQGKSAWVQNDCHKNGPICKTLSMNLRLYAVTNSILRDVT 124

Query: 141 TSQVAVNFECSQVLPCEGIVLQDINLS 163
           T   + NF  + V+ C+ +  +   +S
Sbjct: 125 TLD-SKNFHVN-VIGCKNLTFERFKIS 149

[Close]
BLAST of Cp4.1LG14g07570 vs. Swiss-Prot
Match: PGLR2_PLAAC (Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.8e-14
Identity = 45/158 (28.48%), Postives = 84/158 (53.16%), Query Frame = 1 

Query: 21  ALREAWREACGYNGYGVVLVPEGSFLVLPLVLEGPCKRS-IGLHINGELLAPVSKNFATG 80
           A+ +AW+ AC   G   VL+P+G++ +  + ++GPCK S IG  I+G + AP   +    
Sbjct: 26  AVMKAWKAACASQGPSTVLIPKGNYNMGEVAMQGPCKGSKIGFQIDGVVKAPADPSKFKS 85

Query: 81  EYWLSISDVDNFFVAGSGSLNGGGSSAWQSDTSNRPISNSKVQIHDVRYEGIRGSSTSQV 140
           + W+S   +D   V+G+G+L+G G +AW  +  ++   N K    ++R++ ++ +    +
Sbjct: 86  DGWVSFYRIDGLTVSGTGTLDGQGQTAWAKNNCDKN-PNCKHAAMNLRFDFLKHAMVRDI 145

Query: 141 -AVNFEC--SQVLPCEGIVLQDINLSFKGDGEPTSICH 175
            ++N +     VL CE I  Q + ++  G    T   H
Sbjct: 146 TSLNSKMFHINVLECEDITFQHVTVTAPGTSINTDGIH 182

[Close]
BLAST of Cp4.1LG14g07570 vs. TrEMBL
Match: A0A0A0L7H9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G063610 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.0e-26
Identity = 62/125 (49.60%), Postives = 85/125 (68.00%), Query Frame = 1 

Query: 9   GHHGEALKSYVDALREAWREACGYNGYGVVLVP-EGSFLVLPLVLEGPCKRSIGLHINGE 68
           G   +A+     AL  AW EAC  NG G+VL+P +G FLVLPL+L+GPC   I + ++GE
Sbjct: 4   GAKPDAITDNSKALSSAWSEACTNNGGGIVLIPAKGRFLVLPLLLQGPCHGFIRIQLDGE 63

Query: 69  LLAPVSKNFATGEYWLSISDVDNFFVAGSGSLNGGGSSAWQSDTSNRPISNSKVQIHDVR 128
           LLAP+ ++FATG+YWLSI  V+N F+ G GSL+G GS+AW S + NRP+S     I++ R
Sbjct: 64  LLAPLDEHFATGDYWLSIDQVNNLFIDGLGSLDGRGSTAWPSTSHNRPVSMRLNGINNAR 123

Query: 129 YEGIR 133
              I+
Sbjct: 124 ITNIK 128

[Close]
BLAST of Cp4.1LG14g07570 vs. TrEMBL
Match: A0A0A0L660_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G063620 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.0e-23
Identity = 54/75 (72.00%), Postives = 64/75 (85.33%), Query Frame = 1 

Query: 116 ISNSKVQIHDVRYEGIRGSSTSQVAVNFECSQVLPCEGIVLQDINLSFKGDGEPTSICHN 175
           ++ S VQI DVRY+GI GSS + VAV+FECSQVLPC+GIVLQDINL+F G G+ TSICHN
Sbjct: 172 MNKSMVQIKDVRYQGITGSSNTPVAVDFECSQVLPCQGIVLQDINLTFNGGGKTTSICHN 231

Query: 176 VKGSAFGKQIPYSCL 191
           VKGSA G+Q+P SCL
Sbjct: 232 VKGSASGQQLPPSCL 246

[Close]
BLAST of Cp4.1LG14g07570 vs. TrEMBL
Match: U5FG24_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0019s09510g PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.4e-17
Identity = 51/163 (31.29%), Postives = 86/163 (52.76%), Query Frame = 1 

Query: 16  KSYVDALREAWREACGYNGYGVVLVPEGSFLVLPLVLEGPCKRSIGLHINGELLAPVSKN 75
           K   +AL  AW++AC       VL+P G++ +  L L GPCK +I L ++G L APV  N
Sbjct: 20  KDITEALTNAWKDACASTNPSKVLIPSGTYSLRKLTLAGPCKAAIELQVDGMLKAPVDPN 79

Query: 76  FATGEYWLSISDVDNFFVAGSGSLNGGGSSAWQSDTSNRPISNSKVQIHDVRYEGIRGS- 135
             +G +W++   VD F ++GSG+ +G G +AW   T  +      + + ++R++ I  + 
Sbjct: 80  QFSGGHWVNFGHVDKFTLSGSGTFDGQGKAAWSKSTCQKDKDCDSLPM-NLRFDFITNAL 139

Query: 136 ---STSQVAVNFECSQVLPCEGIVLQDINLSFKGDGEPTSICH 175
               T++ + NF  + VL C+ +  Q   +S  G+   T   H
Sbjct: 140 VRDITTRDSKNFHVN-VLGCKNLTFQHFTVSAPGESVNTDGIH 180

[Close]
BLAST of Cp4.1LG14g07570 vs. TrEMBL
Match: U5FEM3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s09500g PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.4e-17
Identity = 51/163 (31.29%), Postives = 86/163 (52.76%), Query Frame = 1 

Query: 16  KSYVDALREAWREACGYNGYGVVLVPEGSFLVLPLVLEGPCKRSIGLHINGELLAPVSKN 75
           K   +AL  AW++AC       VL+P G++ +  L L GPCK +I L ++G L APV  N
Sbjct: 40  KDITEALTNAWKDACASTNPSKVLIPSGTYSLRKLTLAGPCKAAIELQVDGMLKAPVDPN 99

Query: 76  FATGEYWLSISDVDNFFVAGSGSLNGGGSSAWQSDTSNRPISNSKVQIHDVRYEGIRGS- 135
             +G +W++   VD F ++GSG+ +G G +AW   T  +      + + ++R++ I  + 
Sbjct: 100 QFSGGHWVNFGHVDKFTLSGSGTFDGQGKAAWSKSTCQKDKDCDSLPM-NLRFDFITNAL 159

Query: 136 ---STSQVAVNFECSQVLPCEGIVLQDINLSFKGDGEPTSICH 175
               T++ + NF  + VL C+ +  Q   +S  G+   T   H
Sbjct: 160 VRDITTRDSKNFHVN-VLGCKNLTFQHFTVSAPGESVNTDGIH 200

[Close]
BLAST of Cp4.1LG14g07570 vs. TrEMBL
Match: A0A077B569_SORHL (Group 13 allergen Sor h 13.02 OS=Sorghum halepense PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.4e-17
Identity = 49/169 (28.99%), Postives = 83/169 (49.11%), Query Frame = 1 

Query: 9   GHHGEALKSYVDALREAWREACGYNGYGVVLVPEGSFLVLPLVLEGPCKRSIGLHINGEL 68
           G  G+  K    A++EAW  ACG  G   +L+P+G +LV PL   GPCK  + + ++G L
Sbjct: 49  GASGDGKKDSTKAVQEAWTSACGGTGKQTILIPKGDYLVGPLNFTGPCKGDVTIQVDGNL 108

Query: 69  LAPVSKNFATGEYWLSISDVDNFFVAGSGSLNGGGSSAWQSDTSNRPISNSKVQIHDVRY 128
           LA    +   G  W+ I  VDN  + G G L+G G + W  ++  +   + K+  + +  
Sbjct: 109 LATTDLSQYKGN-WIEILRVDNLVITGKGKLDGQGPAVWSKNSCAKKY-DCKILPNSLVL 168

Query: 129 EGIRGSSTSQVAV---NFECSQVLPCEGIVLQDINLSFKGDGEPTSICH 175
           + +     S + +    F    V  C+G+ ++D+ ++  GD   T   H
Sbjct: 169 DYVNNGEVSGITLLNAKFFHMNVFQCKGVTIKDVTVTAPGDSPNTDGIH 215

[Close]
BLAST of Cp4.1LG14g07570 vs. TAIR10
Match: AT1G17150.1 (AT1G17150.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 73.2 bits (178), Expect = 2.0e-13
Identity = 34/76 (44.74%), Postives = 51/76 (67.11%), Query Frame = 1 

Query: 116 ISNSKVQIHDVRYEGIRGSSTSQVAVNFECSQVLPCEGIVLQDINLSFKG-DGEPTSICH 175
           + +S +QI +V  + I G+S ++VAV F+CS+  PC+ + L DINL+  G DG  +++C 
Sbjct: 326 MGDSHIQIRNVTLKNIWGTSKNKVAVKFQCSKTFPCKDVQLIDINLTHHGVDGPASALCE 385

Query: 176 NVKGSAFGKQIPYSCL 191
           NV GSA GK +P  CL
Sbjct: 386 NVDGSATGKMVPPHCL 401

[Close]
BLAST of Cp4.1LG14g07570 vs. TAIR10
Match: AT2G15450.1 (AT2G15450.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 72.8 bits (177), Expect = 2.6e-13
Identity = 34/74 (45.95%), Postives = 48/74 (64.86%), Query Frame = 1 

Query: 119 SKVQIHDVRYEGIRGSSTSQVAVNFECSQVLPCEGIVLQDINLSFKG--DGEPTSICHNV 178
           S VQI +++ + I G+S ++VAVN +CS++ PC+ + L DIN+   G  DG  TS+C NV
Sbjct: 330 SHVQIQNLKLKNIYGTSKNKVAVNLQCSKIFPCKNVELIDINIKQNGVKDGSSTSVCENV 389

Query: 179 KGSAFGKQIPYSCL 191
            G A GK  P  CL
Sbjct: 390 DGFARGKMFPPHCL 403

[Close]
BLAST of Cp4.1LG14g07570 vs. TAIR10
Match: AT2G15470.1 (AT2G15470.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 72.4 bits (176), Expect = 3.4e-13
Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = 1 

Query: 119 SKVQIHDVRYEGIRGSSTSQVAVNFECSQVLPCEGIVLQDINLSFKG--DGEPTSICHNV 178
           S VQI +++ + I G+S ++VA+N +CS++ PC+ + L DIN+   G  DG  TS+C NV
Sbjct: 330 SHVQIQNLKLKNIYGTSKNKVAMNLQCSKIFPCKNVELIDINIKQNGVKDGSSTSVCENV 389

Query: 179 KGSAFGKQIPYSCL 191
            G A GK  P  CL
Sbjct: 390 DGFARGKMFPQHCL 403

[Close]
BLAST of Cp4.1LG14g07570 vs. TAIR10
Match: AT1G78400.1 (AT1G78400.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 72.0 bits (175), Expect = 4.4e-13
Identity = 40/119 (33.61%), Postives = 58/119 (48.74%), Query Frame = 1 

Query: 9   GHHGEALKSYVDALREAWREACGYNGYGVVLVPEGSFLVLPLVLEGPCKRSIGLHINGEL 68
           G  G+       A  +AW++AC + G   V +P G+F +  +   GPCK  I   I G L
Sbjct: 41  GARGDGKTDNTMAFTKAWKDACQWKGLPRVYIPFGTFYLGAVAFTGPCKSRISFIIKGTL 100

Query: 69  LAPVSKNFATGEYWLSISDVDNFFVAGSGSLNGGGSSAWQSDTSNRPISNSKVQIHDVR 128
           LAP   N    + W+    VD   V+G G L+G GS +W       P++N + Q H+ R
Sbjct: 101 LAPKDPNAIKQDSWIIFRYVDYLTVSGGGILDGQGSYSW-------PLNNCR-QTHNCR 151

[Close]
BLAST of Cp4.1LG14g07570 vs. TAIR10
Match: AT3G57510.1 (AT3G57510.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 72.0 bits (175), Expect = 4.4e-13
Identity = 43/178 (24.16%), Postives = 81/178 (45.51%), Query Frame = 1 

Query: 9   GHHGEALKSYVDALREAWREACGYNGYGVVLVPEG-SFLVLPLVLEGPCKRSIGLHINGE 68
           G  G+       A ++AW++AC  NG    LVP+G ++L+      GPCK      I G 
Sbjct: 74  GAKGDGKTDDTQAFKKAWKKACSTNGVTTFLVPKGKTYLLKSTRFRGPCKSLRNFQILGT 133

Query: 69  LLAPVSK-NFATGEYWLSISDVDNFFVAG--SGSLNGGGSSAWQSD--------TSNRPI 128
           L A   + ++    +WL + DV+N  + G  +G +NG G + WQ+          +  P 
Sbjct: 134 LSASTKRSDYKDKNHWLILEDVNNLSIDGGSTGIINGNGKTWWQNSCKIDKSKPCTKAPT 193

Query: 129 SNSKVQIHDVRYEGIRGSSTSQVAVNFECSQVLPCEGIVLQDINLSFKGDGEPTSICH 175
           + +   + ++  + +R  +  Q+ ++ E      C  + + ++ ++  GD   T   H
Sbjct: 194 ALTLYNLKNLNVKNLRVKNAQQIQISIE-----KCNKVEVSNVEITAPGDSPNTDGIH 246

[Close]
BLAST of Cp4.1LG14g07570 vs. NCBI nr
Match: gi|802778727|ref|XP_012091225.1| (PREDICTED: exopolygalacturonase-like [Jatropha curcas])

HSP 1 Score: 129.8 bits (325), Expect = 5.1e-27
Identity = 66/171 (38.60%), Postives = 100/171 (58.48%), Query Frame = 1 

Query: 20  DALREAWREACGYNGYGVVLVPEGSFLVLPLVLEGPCKRSIGLHINGELLAPVSKNFATG 79
           +A+  AW+EAC   G   VL+P+G+FL+  + LEGPCK ++ + + G L AP       G
Sbjct: 48  EAVMSAWKEACAA-GSSKVLIPKGTFLMGIVKLEGPCKGAMEIELQGTLKAPADPKAIKG 107

Query: 80  EYWLSISDVDNFFVAGSGSLNGGGSSAWQSDTSNRPISNSKVQIHDVRYEGIRGSSTSQV 139
           E W++I  VD   + G G+ +G G +AW+        + SKV+I D+ ++ I+G++T+ +
Sbjct: 108 EGWITIDHVDQLTICGGGTFDGQGEAAWKD-------APSKVKISDITFKNIKGTTTTPI 167

Query: 140 AVNFECSQVLPCEGIVLQDINLSFKG-DGEPTSICHNVKGSAFGKQIPYSC 190
           AV   CS  LPCE + L DI+L + G +G   S C NVK +  GK  P  C
Sbjct: 168 AVQLSCSNGLPCEKVELADIDLVYSGSEGPAKSECTNVKPTITGKLSPAGC 210

[Close]
BLAST of Cp4.1LG14g07570 vs. NCBI nr
Match: gi|700200928|gb|KGN56061.1| (hypothetical protein Csa_3G063610 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 4.3e-26
Identity = 62/125 (49.60%), Postives = 85/125 (68.00%), Query Frame = 1 

Query: 9   GHHGEALKSYVDALREAWREACGYNGYGVVLVP-EGSFLVLPLVLEGPCKRSIGLHINGE 68
           G   +A+     AL  AW EAC  NG G+VL+P +G FLVLPL+L+GPC   I + ++GE
Sbjct: 4   GAKPDAITDNSKALSSAWSEACTNNGGGIVLIPAKGRFLVLPLLLQGPCHGFIRIQLDGE 63

Query: 69  LLAPVSKNFATGEYWLSISDVDNFFVAGSGSLNGGGSSAWQSDTSNRPISNSKVQIHDVR 128
           LLAP+ ++FATG+YWLSI  V+N F+ G GSL+G GS+AW S + NRP+S     I++ R
Sbjct: 64  LLAPLDEHFATGDYWLSIDQVNNLFIDGLGSLDGRGSTAWPSTSHNRPVSMRLNGINNAR 123

Query: 129 YEGIR 133
              I+
Sbjct: 124 ITNIK 128

[Close]
BLAST of Cp4.1LG14g07570 vs. NCBI nr
Match: gi|778688362|ref|XP_011652730.1| (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 4.3e-26
Identity = 62/125 (49.60%), Postives = 85/125 (68.00%), Query Frame = 1 

Query: 9   GHHGEALKSYVDALREAWREACGYNGYGVVLVP-EGSFLVLPLVLEGPCKRSIGLHINGE 68
           G   +A+     AL  AW EAC  NG G+VL+P +G FLVLPL+L+GPC   I + ++GE
Sbjct: 4   GAKPDAITDNSKALSSAWSEACTNNGGGIVLIPAKGRFLVLPLLLQGPCHGFIRIQLDGE 63

Query: 69  LLAPVSKNFATGEYWLSISDVDNFFVAGSGSLNGGGSSAWQSDTSNRPISNSKVQIHDVR 128
           LLAP+ ++FATG+YWLSI  V+N F+ G GSL+G GS+AW S + NRP+S     I++ R
Sbjct: 64  LLAPLDEHFATGDYWLSIDQVNNLFIDGLGSLDGRGSTAWPSTSHNRPVSMRLNGINNAR 123

Query: 129 YEGIR 133
              I+
Sbjct: 124 ITNIK 128

[Close]
BLAST of Cp4.1LG14g07570 vs. NCBI nr
Match: gi|659096624|ref|XP_008449197.1| (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 120.9 bits (302), Expect = 2.3e-24
Identity = 63/125 (50.40%), Postives = 82/125 (65.60%), Query Frame = 1 

Query: 9   GHHGEALKSYVDALREAWREACGYNGYGVVLVPE-GSFLVLPLVLEGPCKRSIGLHINGE 68
           G   +A+     AL  AW EAC  NG GVVL+P  G FLVLPL+L+GPC   I + ++GE
Sbjct: 4   GAKPDAITDNSKALSTAWSEACTNNGGGVVLIPALGRFLVLPLLLQGPCHGFIHIQLDGE 63

Query: 69  LLAPVSKNFATGEYWLSISDVDNFFVAGSGSLNGGGSSAWQSDTSNRPISNSKVQIHDVR 128
           LLAP+++N  TG+YWLSI  V+N F+ G G LNG GS+AW S + NRPIS     I++ R
Sbjct: 64  LLAPLNEN--TGDYWLSIDKVNNLFIDGLGRLNGRGSTAWPSASHNRPISMKLTGINNAR 123

Query: 129 YEGIR 133
              I+
Sbjct: 124 ISNIK 126

[Close]
BLAST of Cp4.1LG14g07570 vs. NCBI nr
Match: gi|764522914|ref|XP_011457655.1| (PREDICTED: polygalacturonase-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 119.4 bits (298), Expect = 6.8e-24
Identity = 62/167 (37.13%), Postives = 96/167 (57.49%), Query Frame = 1 

Query: 20  DALREAWREACGYNGYGVVLVPEGSFLVLPLVLEGPCKRSIGLHINGELLAP-VSKNFAT 79
           +AL  AW++AC       VLVP G++ +     +GPCK  I L + G L AP  S   + 
Sbjct: 107 EALANAWKDACASTSASKVLVPNGTYKLKEASFKGPCKAPIELQVQGTLEAPQASAQLSK 166

Query: 80  GEYWLSISDVDNFFVAGSGSLNGGGSSAWQSDTSNR-------PISNSKVQIHDVRYEGI 139
            + W+  S++DNF + G G+ +G G  AW ++  ++        I+ SKV+I +V ++ I
Sbjct: 167 PDTWIEFSNLDNFTLLGGGTFDGQGQKAWLANDCHKNSKCTSIAIAPSKVKISNVSFKNI 226

Query: 140 RGSSTSQVAVNFECSQVLPCEGIVLQDINLSFKG-DGEPTSICHNVK 178
           RG+S++ VAV   C+  LPCE + + DI+L + G +G  TS C NVK
Sbjct: 227 RGTSSTPVAVKIACATGLPCEKVEMTDIDLKYSGNEGSITSQCSNVK 273

The following BLAST results are available for this feature:
BLAST of Cp4.1LG14g07570 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PGLR3_MAIZE1.2e-1728.24Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1[more]
PGLR2_MAIZE4.0e-1627.06Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1[more]
PGLR1_MAIZE6.8e-1627.06Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1[more]
PGLR_OENOR4.4e-1534.01Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1[more]
PGLR2_PLAAC3.8e-1428.48Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1[more]
BLAST of Cp4.1LG14g07570 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7H9_CUCSA3.0e-2649.60Uncharacterized protein OS=Cucumis sativus GN=Csa_3G063610 PE=3 SV=1[more]
A0A0A0L660_CUCSA4.0e-2372.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G063620 PE=3 SV=1[more]
U5FG24_POPTR7.4e-1731.29Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0019s09510g P... [more]
U5FEM3_POPTR7.4e-1731.29Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s09500g PE=3 SV=1[more]
A0A077B569_SORHL7.4e-1728.99Group 13 allergen Sor h 13.02 OS=Sorghum halepense PE=3 SV=1[more]
BLAST of Cp4.1LG14g07570 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G17150.12.0e-1344.74 Pectin lyase-like superfamily protein[more]
AT2G15450.12.6e-1345.95 Pectin lyase-like superfamily protein[more]
AT2G15470.13.4e-1344.59 Pectin lyase-like superfamily protein[more]
AT1G78400.14.4e-1333.61 Pectin lyase-like superfamily protein[more]
AT3G57510.14.4e-1324.16 Pectin lyase-like superfamily protein[more]
BLAST of Cp4.1LG14g07570 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|802778727|ref|XP_012091225.1|5.1e-2738.60PREDICTED: exopolygalacturonase-like [Jatropha curcas][more]
gi|700200928|gb|KGN56061.1|4.3e-2649.60hypothetical protein Csa_3G063610 [Cucumis sativus][more]
gi|778688362|ref|XP_011652730.1|4.3e-2649.60PREDICTED: exopolygalacturonase-like [Cucumis sativus][more]
gi|659096624|ref|XP_008449197.1|2.3e-2450.40PREDICTED: exopolygalacturonase-like [Cucumis melo][more]
gi|764522914|ref|XP_011457655.1|6.8e-2437.13PREDICTED: polygalacturonase-like [Fragaria vesca subsp. vesca][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: INTERPRO
TermDefinition
IPR012334Pectin_lyas_fold
IPR011050Pectin_lyase_fold/virulence
IPR000743Glyco_hydro_28
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071555 cell wall organization
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0004650 polygalacturonase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g07570.1Cp4.1LG14g07570.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 112..178
score: 9.5
IPR011050Pectin lyase fold/virulence factorunknownSSF51126Pectin lyase-likecoord: 115..190
score: 2.2E-17coord: 17..113
score: 1.4
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 15..112
score: 7.4E-15coord: 114..189
score: 5.0
NoneNo IPR availablePANTHERPTHR31375FAMILY NOT NAMEDcoord: 119..190
score: 1.6

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG14g07570Silver-seed gourdcarcpeB0683
Cp4.1LG14g07570Silver-seed gourdcarcpeB0833
Cp4.1LG14g07570Cucumber (Chinese Long) v3cpecucB0256
Cp4.1LG14g07570Wax gourdcpewgoB0276
Cp4.1LG14g07570Cucurbita pepo (Zucchini)cpecpeB240
Cp4.1LG14g07570Cucumber (Gy14) v1cgycpeB0026
Cp4.1LG14g07570Cucurbita maxima (Rimu)cmacpeB345
Cp4.1LG14g07570Cucurbita maxima (Rimu)cmacpeB469
Cp4.1LG14g07570Cucurbita maxima (Rimu)cmacpeB818
Cp4.1LG14g07570Cucurbita moschata (Rifu)cmocpeB308
Cp4.1LG14g07570Cucurbita moschata (Rifu)cmocpeB772
Cp4.1LG14g07570Wild cucumber (PI 183967)cpecpiB216
Cp4.1LG14g07570Cucumber (Chinese Long) v2cpecuB213
Cp4.1LG14g07570Bottle gourd (USVL1VR-Ls)cpelsiB179
Cp4.1LG14g07570Watermelon (Charleston Gray)cpewcgB194
Cp4.1LG14g07570Melon (DHL92) v3.5.1cpemeB185
Cp4.1LG14g07570Cucumber (Gy14) v2cgybcpeB326
Cp4.1LG14g07570Melon (DHL92) v3.6.1cpemedB232