Cp4.1LG12g00810.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG12g00810.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	UDP-D-glucuronate 4-epimerase
Location	Cp4.1LG12 : 486748 .. 487242 (-)
Sequence length	495

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTATTTCTTTTTCACAAAGGATATCCTCCAAGGGAAACAAATCGATATCTACAAAACTCACGACGCGAAGGAGGTGGCGCGTGACTTCACGTACATCGACGATATTGTAAAAGGCTGCCTCGGAGCATTAGACACGGCGGAGAAGTCCACCGGGAGCGGCGGAAAGAAGAAATCTCCGGCGCAGTTGAGGATTTATAACCTTGGGAATACGTCGCCGGTGCCGGTAGGGAAATTGGTGTCGGTGCTTGAGAATCTGTTGAATACAAAGGCGAAAAAGCATATAATTACTATGCCACGAAACGGCGACGTTCCGTTTACTCATGCGAATGTTAGTTTAGCGTTTAAGGATTTCGGGTACAAACCATCCACGGATCTACCCACGGGGCTCCGGAAATTCGTGAAGTGGTACGTTGGGTATTATGGAATTCAGTCGAGGGTAAAAAAGGAAAATGAGAAAAATAATAATCAGTCACCCGGGGAATCCGCTTGA

mRNA sequence

ATGGCGTATTTCTTTTTCACAAAGGATATCCTCCAAGGGAAACAAATCGATATCTACAAAACTCACGACGCGAAGGAGGTGGCGCGTGACTTCACGTACATCGACGATATTGTAAAAGGCTGCCTCGGAGCATTAGACACGGCGGAGAAGTCCACCGGGAGCGGCGGAAAGAAGAAATCTCCGGCGCAGTTGAGGATTTATAACCTTGGGAATACGTCGCCGGTGCCGGTAGGGAAATTGGTGTCGGTGCTTGAGAATCTGTTGAATACAAAGGCGAAAAAGCATATAATTACTATGCCACGAAACGGCGACGTTCCGTTTACTCATGCGAATGTTAGTTTAGCGTTTAAGGATTTCGGGTACAAACCATCCACGGATCTACCCACGGGGCTCCGGAAATTCGTGAAGTGGTACGTTGGGTATTATGGAATTCAGTCGAGGGTAAAAAAGGAAAATGAGAAAAATAATAATCAGTCACCCGGGGAATCCGCTTGA

Coding sequence (CDS)

ATGGCGTATTTCTTTTTCACAAAGGATATCCTCCAAGGGAAACAAATCGATATCTACAAAACTCACGACGCGAAGGAGGTGGCGCGTGACTTCACGTACATCGACGATATTGTAAAAGGCTGCCTCGGAGCATTAGACACGGCGGAGAAGTCCACCGGGAGCGGCGGAAAGAAGAAATCTCCGGCGCAGTTGAGGATTTATAACCTTGGGAATACGTCGCCGGTGCCGGTAGGGAAATTGGTGTCGGTGCTTGAGAATCTGTTGAATACAAAGGCGAAAAAGCATATAATTACTATGCCACGAAACGGCGACGTTCCGTTTACTCATGCGAATGTTAGTTTAGCGTTTAAGGATTTCGGGTACAAACCATCCACGGATCTACCCACGGGGCTCCGGAAATTCGTGAAGTGGTACGTTGGGTATTATGGAATTCAGTCGAGGGTAAAAAAGGAAAATGAGAAAAATAATAATCAGTCACCCGGGGAATCCGCTTGA

Protein sequence

MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKSPAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFGYKPSTDLPTGLRKFVKWYVGYYGIQSRVKKENEKNNNQSPGESA

Homology

[Close]

BLAST of Cp4.1LG12g00810.1 vs. Swiss-Prot
Match: GAE6_ARATH (UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 5.8e-72
Identity = 128/151 (84.77%), Postives = 139/151 (92.05%), Query Frame = 1


Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFTKDIL GK IDIY+T D +EVARDFTYIDDIVKGC+GALDTAEKSTGSGGKK+ 
Sbjct: 302 MAYFFFTKDILHGKSIDIYRTQDNQEVARDFTYIDDIVKGCVGALDTAEKSTGSGGKKRG 361

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
            AQLR+YNLGNTSPVPVG+LVS+LE LL TKAKKH+I MPRNGDVP+THANVSLA+KDFG
Sbjct: 362 QAQLRVYNLGNTSPVPVGRLVSILEGLLGTKAKKHLIKMPRNGDVPYTHANVSLAYKDFG 421

Query: 121 YKPSTDLPTGLRKFVKWYVGYYGIQSRVKKE 152
           YKP+TDL  GLRKFVKWYVGYYGIQ RVKKE
Sbjct: 422 YKPTTDLAAGLRKFVKWYVGYYGIQPRVKKE 452

[Close]

BLAST of Cp4.1LG12g00810.1 vs. Swiss-Prot
Match: GAE4_ARATH (UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana GN=GAE4 PE=1 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 1.8e-57
Identity = 104/142 (73.24%), Postives = 122/142 (85.92%), Query Frame = 1


Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFTKDIL+GK I I+++ +   VARDFTYIDDIVKGCL ALDTAEKSTGSGGKK+ 
Sbjct: 287 MAYFFFTKDILKGKSISIFESANHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRG 346

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
           PAQLR++NLGNTSPVPV  LV +LE  L  KAKK++I MPRNGDVPFTHAN+SLA ++ G
Sbjct: 347 PAQLRVFNLGNTSPVPVSDLVRILERQLKVKAKKNLIKMPRNGDVPFTHANISLAQRELG 406

Query: 121 YKPSTDLPTGLRKFVKWYVGYY 143
           YKP+TDL TGL+KFV+WY+ YY
Sbjct: 407 YKPTTDLQTGLKKFVRWYLSYY 428

[Close]

BLAST of Cp4.1LG12g00810.1 vs. Swiss-Prot
Match: GAE5_ARATH (UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thaliana GN=GAE5 PE=2 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 1.8e-57
Identity = 105/142 (73.94%), Postives = 121/142 (85.21%), Query Frame = 1


Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFTKDIL+GK I ++++ D   VARDFTYIDDIVKGCLGALDTAEKSTGSGGKKK 
Sbjct: 286 MAYFFFTKDILKGKTITVFESPDKGSVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKG 345

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
           PA  RIYNLGNTSPVPV KLV++LE LL  KAKK I+ +PRNGDV FTHAN++LA  + G
Sbjct: 346 PAMFRIYNLGNTSPVPVTKLVTILEKLLKMKAKKKIMPLPRNGDVEFTHANITLAQAELG 405

Query: 121 YKPSTDLPTGLRKFVKWYVGYY 143
           YKP+ DL TGL+KFVKWY+G+Y
Sbjct: 406 YKPAVDLETGLKKFVKWYMGFY 427

[Close]

BLAST of Cp4.1LG12g00810.1 vs. Swiss-Prot
Match: GAE2_ARATH (UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana GN=GAE2 PE=2 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.4e-57
Identity = 104/142 (73.24%), Postives = 124/142 (87.32%), Query Frame = 1


Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFT+DIL+GK I I++  +   VARDFTYIDDIVKGCLGALDTAEKSTGSGGKK+ 
Sbjct: 282 MAYFFFTRDILKGKAISIFEGANHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRG 341

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
            AQLR++NLGNTSPVPV  LVS+LE LL  KAK++++ +PRNGDVPFTHAN+S A ++FG
Sbjct: 342 AAQLRVFNLGNTSPVPVTDLVSILERLLKVKAKRNMMKLPRNGDVPFTHANISSAQREFG 401

Query: 121 YKPSTDLPTGLRKFVKWYVGYY 143
           YKPSTDL TGL+KFV+WY+GYY
Sbjct: 402 YKPSTDLQTGLKKFVRWYLGYY 423

[Close]

BLAST of Cp4.1LG12g00810.1 vs. Swiss-Prot
Match: GAE3_ARATH (UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 8.4e-55
Identity = 100/142 (70.42%), Postives = 121/142 (85.21%), Query Frame = 1


Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFT+DIL+GK I I++  +   VARDFTYIDDIVKGCLGALDTAEKSTGSGGKK+ 
Sbjct: 281 MAYFFFTRDILKGKAISIFEGVNHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRG 340

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
            AQLR++NLGNTSPVPV  LV++LE LL  KAK++I+ +PRNGDV FTHAN+S A ++ G
Sbjct: 341 AAQLRVFNLGNTSPVPVTDLVTILERLLKVKAKRNIMKLPRNGDVQFTHANISSAQRELG 400

Query: 121 YKPSTDLPTGLRKFVKWYVGYY 143
           YKP+TDL TGL+KF +WY+GYY
Sbjct: 401 YKPTTDLQTGLKKFARWYLGYY 422

[Close]

BLAST of Cp4.1LG12g00810.1 vs. TrEMBL
Match: A0A0A0LLA2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G146400 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 3.2e-85
Identity = 157/164 (95.73%), Postives = 160/164 (97.56%), Query Frame = 1


Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKK 
Sbjct: 300 MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKG 359

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
           PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLA KDFG
Sbjct: 360 PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLALKDFG 419

Query: 121 YKPSTDLPTGLRKFVKWYVGYYGIQSRVKKENEKNNNQSPGESA 165
           YKP+TDLPTGLRKFVKWYVGYYGIQSRV+KE+EKNNN SP ESA
Sbjct: 420 YKPTTDLPTGLRKFVKWYVGYYGIQSRVRKESEKNNNHSPEESA 463

[Close]

BLAST of Cp4.1LG12g00810.1 vs. TrEMBL
Match: B9S9Z1_RICCO (UDP-glucuronate 5-epimerase, putative OS=Ricinus communis GN=RCOM_0523750 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 3.3e-74
Identity = 133/155 (85.81%), Postives = 148/155 (95.48%), Query Frame = 1


Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFTKDILQGKQIDIY+T D K+VARDFTYIDD+VKGC+GALDTAEKSTGSGGKKK 
Sbjct: 241 MAYFFFTKDILQGKQIDIYQTQDQKQVARDFTYIDDVVKGCVGALDTAEKSTGSGGKKKG 300

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
           PAQLR+YNLGNTSPVPVGKLVS+LENLLNTKAKKH+I MPRNGDVP+THANVSLA+KDFG
Sbjct: 301 PAQLRVYNLGNTSPVPVGKLVSILENLLNTKAKKHVIKMPRNGDVPYTHANVSLAYKDFG 360

Query: 121 YKPSTDLPTGLRKFVKWYVGYYGIQSRVKKENEKN 156
           YKP+TDL +GLRKFVKWYVGYYGIQ++VK +N+ N
Sbjct: 361 YKPTTDLSSGLRKFVKWYVGYYGIQTKVKTQNDIN 395

[Close]

BLAST of Cp4.1LG12g00810.1 vs. TrEMBL
Match: A0A067KSZ3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01088 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 4.3e-74
Identity = 134/158 (84.81%), Postives = 149/158 (94.30%), Query Frame = 1


Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFTKDIL GK ID+Y+T D K+VARDFTYIDDIVKGC+GALDTAEKSTGSGGKKK 
Sbjct: 297 MAYFFFTKDILHGKPIDVYQTQDEKQVARDFTYIDDIVKGCVGALDTAEKSTGSGGKKKG 356

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
           PAQLR+YNLGNTSPVPVGKLV++LE+LLNTKAKKHII MPRNGDVP+THANVSLA+KDFG
Sbjct: 357 PAQLRVYNLGNTSPVPVGKLVAILESLLNTKAKKHIIKMPRNGDVPYTHANVSLAYKDFG 416

Query: 121 YKPSTDLPTGLRKFVKWYVGYYGIQSRVKKENEKNNNQ 159
           YKP+TDL +GLRKFVKWYV YYGIQ+RVKKENE NN++
Sbjct: 417 YKPTTDLSSGLRKFVKWYVSYYGIQTRVKKENEINNSE 454

[Close]

BLAST of Cp4.1LG12g00810.1 vs. TrEMBL
Match: A0A0D2T8P1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G153500 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 2.8e-73
Identity = 136/163 (83.44%), Postives = 148/163 (90.80%), Query Frame = 1


Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFTKDILQGK IDIYKTHD KEVARDFTYIDD+VKGCLGALDTAEKSTGSGGKKK 
Sbjct: 296 MAYFFFTKDILQGKSIDIYKTHDQKEVARDFTYIDDVVKGCLGALDTAEKSTGSGGKKKG 355

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
            AQLR+YNLGNTSPVPVG+LVS+LE LL+TKAKKH+ITMPRNGDVPFTHANV+LAFKDFG
Sbjct: 356 AAQLRVYNLGNTSPVPVGRLVSILEGLLSTKAKKHVITMPRNGDVPFTHANVTLAFKDFG 415

Query: 121 YKPSTDLPTGLRKFVKWYVGYYGIQSRVKKENEKNNNQSPGES 164
           YKP+TDL TGLRKFVKWY+ YYGIQS+  KE     +Q+ GES
Sbjct: 416 YKPTTDLSTGLRKFVKWYISYYGIQSKTGKE-----SQATGES 453

[Close]

BLAST of Cp4.1LG12g00810.1 vs. TrEMBL
Match: D2WK28_GOSHI (UDP-D-glucuronic acid 4-epimerase OS=Gossypium hirsutum GN=GAE2 PE=2 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 8.2e-73
Identity = 135/163 (82.82%), Postives = 148/163 (90.80%), Query Frame = 1


Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFTKDILQGK IDIYKTHD KEVARDFTYIDD+VKGCLGALDTAEKSTGSG KKK 
Sbjct: 296 MAYFFFTKDILQGKSIDIYKTHDQKEVARDFTYIDDVVKGCLGALDTAEKSTGSGEKKKG 355

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
            AQLR+YNLGNTSPVPVG+LVS+LE LL+TKAKKH+ITMPRNGDVPFTHANV+LAFKDFG
Sbjct: 356 AAQLRVYNLGNTSPVPVGRLVSILEGLLSTKAKKHVITMPRNGDVPFTHANVTLAFKDFG 415

Query: 121 YKPSTDLPTGLRKFVKWYVGYYGIQSRVKKENEKNNNQSPGES 164
           YKP+TDL TGLRKFVKWY+ YYGIQS+ +KE     +Q+ GES
Sbjct: 416 YKPTTDLSTGLRKFVKWYISYYGIQSKTRKE-----SQATGES 453

[Close]

BLAST of Cp4.1LG12g00810.1 vs. TAIR10
Match: AT3G23820.1 (AT3G23820.1 UDP-D-glucuronate 4-epimerase 6)

HSP 1 Score: 271.6 bits (693), Expect = 3.3e-73
Identity = 128/151 (84.77%), Postives = 139/151 (92.05%), Query Frame = 1


Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFTKDIL GK IDIY+T D +EVARDFTYIDDIVKGC+GALDTAEKSTGSGGKK+ 
Sbjct: 302 MAYFFFTKDILHGKSIDIYRTQDNQEVARDFTYIDDIVKGCVGALDTAEKSTGSGGKKRG 361

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
            AQLR+YNLGNTSPVPVG+LVS+LE LL TKAKKH+I MPRNGDVP+THANVSLA+KDFG
Sbjct: 362 QAQLRVYNLGNTSPVPVGRLVSILEGLLGTKAKKHLIKMPRNGDVPYTHANVSLAYKDFG 421

Query: 121 YKPSTDLPTGLRKFVKWYVGYYGIQSRVKKE 152
           YKP+TDL  GLRKFVKWYVGYYGIQ RVKKE
Sbjct: 422 YKPTTDLAAGLRKFVKWYVGYYGIQPRVKKE 452

[Close]

BLAST of Cp4.1LG12g00810.1 vs. TAIR10
Match: AT2G45310.1 (AT2G45310.1 UDP-D-glucuronate 4-epimerase 4)

HSP 1 Score: 223.4 bits (568), Expect = 1.0e-58
Identity = 104/142 (73.24%), Postives = 122/142 (85.92%), Query Frame = 1


Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFTKDIL+GK I I+++ +   VARDFTYIDDIVKGCL ALDTAEKSTGSGGKK+ 
Sbjct: 287 MAYFFFTKDILKGKSISIFESANHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRG 346

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
           PAQLR++NLGNTSPVPV  LV +LE  L  KAKK++I MPRNGDVPFTHAN+SLA ++ G
Sbjct: 347 PAQLRVFNLGNTSPVPVSDLVRILERQLKVKAKKNLIKMPRNGDVPFTHANISLAQRELG 406

Query: 121 YKPSTDLPTGLRKFVKWYVGYY 143
           YKP+TDL TGL+KFV+WY+ YY
Sbjct: 407 YKPTTDLQTGLKKFVRWYLSYY 428

[Close]

BLAST of Cp4.1LG12g00810.1 vs. TAIR10
Match: AT4G12250.1 (AT4G12250.1 UDP-D-glucuronate 4-epimerase 5)

HSP 1 Score: 223.4 bits (568), Expect = 1.0e-58
Identity = 105/142 (73.94%), Postives = 121/142 (85.21%), Query Frame = 1


Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFTKDIL+GK I ++++ D   VARDFTYIDDIVKGCLGALDTAEKSTGSGGKKK 
Sbjct: 286 MAYFFFTKDILKGKTITVFESPDKGSVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKG 345

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
           PA  RIYNLGNTSPVPV KLV++LE LL  KAKK I+ +PRNGDV FTHAN++LA  + G
Sbjct: 346 PAMFRIYNLGNTSPVPVTKLVTILEKLLKMKAKKKIMPLPRNGDVEFTHANITLAQAELG 405

Query: 121 YKPSTDLPTGLRKFVKWYVGYY 143
           YKP+ DL TGL+KFVKWY+G+Y
Sbjct: 406 YKPAVDLETGLKKFVKWYMGFY 427

[Close]

BLAST of Cp4.1LG12g00810.1 vs. TAIR10
Match: AT1G02000.1 (AT1G02000.1 UDP-D-glucuronate 4-epimerase 2)

HSP 1 Score: 223.0 bits (567), Expect = 1.3e-58
Identity = 104/142 (73.24%), Postives = 124/142 (87.32%), Query Frame = 1


Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFT+DIL+GK I I++  +   VARDFTYIDDIVKGCLGALDTAEKSTGSGGKK+ 
Sbjct: 282 MAYFFFTRDILKGKAISIFEGANHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRG 341

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
            AQLR++NLGNTSPVPV  LVS+LE LL  KAK++++ +PRNGDVPFTHAN+S A ++FG
Sbjct: 342 AAQLRVFNLGNTSPVPVTDLVSILERLLKVKAKRNMMKLPRNGDVPFTHANISSAQREFG 401

Query: 121 YKPSTDLPTGLRKFVKWYVGYY 143
           YKPSTDL TGL+KFV+WY+GYY
Sbjct: 402 YKPSTDLQTGLKKFVRWYLGYY 423

[Close]

BLAST of Cp4.1LG12g00810.1 vs. TAIR10
Match: AT4G00110.1 (AT4G00110.1 UDP-D-glucuronate 4-epimerase 3)

HSP 1 Score: 214.5 bits (545), Expect = 4.8e-56
Identity = 100/142 (70.42%), Postives = 121/142 (85.21%), Query Frame = 1


Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFT+DIL+GK I I++  +   VARDFTYIDDIVKGCLGALDTAEKSTGSGGKK+ 
Sbjct: 281 MAYFFFTRDILKGKAISIFEGVNHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRG 340

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
            AQLR++NLGNTSPVPV  LV++LE LL  KAK++I+ +PRNGDV FTHAN+S A ++ G
Sbjct: 341 AAQLRVFNLGNTSPVPVTDLVTILERLLKVKAKRNIMKLPRNGDVQFTHANISSAQRELG 400

Query: 121 YKPSTDLPTGLRKFVKWYVGYY 143
           YKP+TDL TGL+KF +WY+GYY
Sbjct: 401 YKPTTDLQTGLKKFARWYLGYY 422

[Close]

BLAST of Cp4.1LG12g00810.1 vs. NCBI nr
Match: gi|449442397|ref|XP_004138968.1| (PREDICTED: UDP-glucuronate 4-epimerase 6 [Cucumis sativus])

HSP 1 Score: 322.4 bits (825), Expect = 4.6e-85
Identity = 157/164 (95.73%), Postives = 160/164 (97.56%), Query Frame = 1


Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKK 
Sbjct: 300 MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKG 359

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
           PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLA KDFG
Sbjct: 360 PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLALKDFG 419

Query: 121 YKPSTDLPTGLRKFVKWYVGYYGIQSRVKKENEKNNNQSPGESA 165
           YKP+TDLPTGLRKFVKWYVGYYGIQSRV+KE+EKNNN SP ESA
Sbjct: 420 YKPTTDLPTGLRKFVKWYVGYYGIQSRVRKESEKNNNHSPEESA 463

[Close]

BLAST of Cp4.1LG12g00810.1 vs. NCBI nr
Match: gi|659114775|ref|XP_008457221.1| (PREDICTED: UDP-glucuronate 4-epimerase 6 [Cucumis melo])

HSP 1 Score: 303.1 bits (775), Expect = 2.9e-79
Identity = 147/154 (95.45%), Postives = 150/154 (97.40%), Query Frame = 1


Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKK 
Sbjct: 300 MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKG 359

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
           PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLA KDFG
Sbjct: 360 PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLALKDFG 419

Query: 121 YKPSTDLPTGLRKFVKWYVGYYGIQSRVKKENEK 155
           YKP+TDLPTGLRKFVKWYVGYYGIQSRVK++  K
Sbjct: 420 YKPTTDLPTGLRKFVKWYVGYYGIQSRVKRKVRK 453

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BLAST of Cp4.1LG12g00810.1 vs. NCBI nr
Match: gi|223538048|gb|EEF39661.1| (UDP-glucuronate 5-epimerase, putative [Ricinus communis])

HSP 1 Score: 285.8 bits (730), Expect = 4.8e-74
Identity = 133/155 (85.81%), Postives = 148/155 (95.48%), Query Frame = 1


Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFTKDILQGKQIDIY+T D K+VARDFTYIDD+VKGC+GALDTAEKSTGSGGKKK 
Sbjct: 241 MAYFFFTKDILQGKQIDIYQTQDQKQVARDFTYIDDVVKGCVGALDTAEKSTGSGGKKKG 300

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
           PAQLR+YNLGNTSPVPVGKLVS+LENLLNTKAKKH+I MPRNGDVP+THANVSLA+KDFG
Sbjct: 301 PAQLRVYNLGNTSPVPVGKLVSILENLLNTKAKKHVIKMPRNGDVPYTHANVSLAYKDFG 360

Query: 121 YKPSTDLPTGLRKFVKWYVGYYGIQSRVKKENEKN 156
           YKP+TDL +GLRKFVKWYVGYYGIQ++VK +N+ N
Sbjct: 361 YKPTTDLSSGLRKFVKWYVGYYGIQTKVKTQNDIN 395

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BLAST of Cp4.1LG12g00810.1 vs. NCBI nr
Match: gi|1000957911|ref|XP_002522810.2| (PREDICTED: LOW QUALITY PROTEIN: UDP-glucuronate 4-epimerase 6 [Ricinus communis])

HSP 1 Score: 285.8 bits (730), Expect = 4.8e-74
Identity = 133/155 (85.81%), Postives = 148/155 (95.48%), Query Frame = 1


Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFTKDILQGKQIDIY+T D K+VARDFTYIDD+VKGC+GALDTAEKSTGSGGKKK 
Sbjct: 302 MAYFFFTKDILQGKQIDIYQTQDQKQVARDFTYIDDVVKGCVGALDTAEKSTGSGGKKKG 361

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
           PAQLR+YNLGNTSPVPVGKLVS+LENLLNTKAKKH+I MPRNGDVP+THANVSLA+KDFG
Sbjct: 362 PAQLRVYNLGNTSPVPVGKLVSILENLLNTKAKKHVIKMPRNGDVPYTHANVSLAYKDFG 421

Query: 121 YKPSTDLPTGLRKFVKWYVGYYGIQSRVKKENEKN 156
           YKP+TDL +GLRKFVKWYVGYYGIQ++VK +N+ N
Sbjct: 422 YKPTTDLSSGLRKFVKWYVGYYGIQTKVKTQNDIN 456

[Close]

BLAST of Cp4.1LG12g00810.1 vs. NCBI nr
Match: gi|502135150|ref|XP_004502237.1| (PREDICTED: UDP-glucuronate 4-epimerase 6 [Cicer arietinum])

HSP 1 Score: 285.8 bits (730), Expect = 4.8e-74
Identity = 137/164 (83.54%), Postives = 152/164 (92.68%), Query Frame = 1


Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFTKDIL GK +D+Y+T D KEVARDFTYIDDIVKGC+GALDTAEKSTGSGGKK+ 
Sbjct: 289 MAYFFFTKDILHGKTVDVYQTQDGKEVARDFTYIDDIVKGCVGALDTAEKSTGSGGKKRG 348

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
           PAQLRIYNLGNTSPVPVGKLVS+LENLL+TKAKKHII MPRNGDVP+THANV+LA+KDFG
Sbjct: 349 PAQLRIYNLGNTSPVPVGKLVSILENLLSTKAKKHIIKMPRNGDVPYTHANVTLAYKDFG 408

Query: 121 YKPSTDLPTGLRKFVKWYVGYYGIQSRVKKENEKNNNQSPGESA 165
           YKP+TDL TGLRKFVKWYV YYGIQSR+KKEN  N+N+ P +SA
Sbjct: 409 YKPTTDLATGLRKFVKWYVRYYGIQSRLKKENH-NDNELPEDSA 451

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g00810.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GAE6_ARATH	5.8e-72	84.77	UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1 SV=1	[more]
GAE4_ARATH	1.8e-57	73.24	UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana GN=GAE4 PE=1 SV=1	[more]
GAE5_ARATH	1.8e-57	73.94	UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thaliana GN=GAE5 PE=2 SV=1	[more]
GAE2_ARATH	2.4e-57	73.24	UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana GN=GAE2 PE=2 SV=1	[more]
GAE3_ARATH	8.4e-55	70.42	UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2 SV=1	[more]

BLAST of Cp4.1LG12g00810.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLA2_CUCSA	3.2e-85	95.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G146400 PE=4 SV=1	[more]
B9S9Z1_RICCO	3.3e-74	85.81	UDP-glucuronate 5-epimerase, putative OS=Ricinus communis GN=RCOM_0523750 PE=4 S...	[more]
A0A067KSZ3_JATCU	4.3e-74	84.81	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01088 PE=4 SV=1	[more]
A0A0D2T8P1_GOSRA	2.8e-73	83.44	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G153500 PE=4 SV=1	[more]
D2WK28_GOSHI	8.2e-73	82.82	UDP-D-glucuronic acid 4-epimerase OS=Gossypium hirsutum GN=GAE2 PE=2 SV=1	[more]

BLAST of Cp4.1LG12g00810.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G23820.1	3.3e-73	84.77	UDP-D-glucuronate 4-epimerase 6	[more]
AT2G45310.1	1.0e-58	73.24	UDP-D-glucuronate 4-epimerase 4	[more]
AT4G12250.1	1.0e-58	73.94	UDP-D-glucuronate 4-epimerase 5	[more]
AT1G02000.1	1.3e-58	73.24	UDP-D-glucuronate 4-epimerase 2	[more]
AT4G00110.1	4.8e-56	70.42	UDP-D-glucuronate 4-epimerase 3	[more]

BLAST of Cp4.1LG12g00810.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442397\|ref\|XP_004138968.1\|	4.6e-85	95.73	PREDICTED: UDP-glucuronate 4-epimerase 6 [Cucumis sativus]	[more]
gi\|659114775\|ref\|XP_008457221.1\|	2.9e-79	95.45	PREDICTED: UDP-glucuronate 4-epimerase 6 [Cucumis melo]	[more]
gi\|223538048\|gb\|EEF39661.1\|	4.8e-74	85.81	UDP-glucuronate 5-epimerase, putative [Ricinus communis]	[more]
gi\|1000957911\|ref\|XP_002522810.2\|	4.8e-74	85.81	PREDICTED: LOW QUALITY PROTEIN: UDP-glucuronate 4-epimerase 6 [Ricinus communis]	[more]
gi\|502135150\|ref\|XP_004502237.1\|	4.8e-74	83.54	PREDICTED: UDP-glucuronate 4-epimerase 6 [Cicer arietinum]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives

Vocabulary: **INTERPRO**
Term	Definition
IPR016040	NAD(P)-bd_dom
IPR008089	Nuc_sugar_epim

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0009684	indoleacetic acid biosynthetic process
biological_process	GO:0009117	nucleotide metabolic process
biological_process	GO:0006569	tryptophan catabolic process
cellular_component	GO:0005768	endosome
cellular_component	GO:0005802	trans-Golgi network
molecular_function	GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives
molecular_function	GO:0050662	coenzyme binding
molecular_function	GO:0050379	UDP-glucuronate 5'-epimerase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG12g00810	Cp4.1LG12g00810	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG12g00810.1:cds:001	Cp4.1LG12g00810.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG12g00810.1	Cp4.1LG12g00810.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008089	Nucleotide sugar epimerase	PRINTS	PR01713	NUCEPIMERASE	coord: 29..44 score: 2.8E-19coord: 104..121 score: 2.8E-19coord: 64..79 score: 2.8
IPR016040	NAD(P)-binding domain	unknown	SSF51735	NAD(P)-binding Rossmann-fold domains	coord: 3..144 score: 9.78
None	No IPR available	GENE3D	G3DSA:3.90.25.10		coord: 6..143 score: 2.5
None	No IPR available	PANTHER	PTHR10366	NAD DEPENDENT EPIMERASE/DEHYDRATASE	coord: 1..161 score: 5.1
None	No IPR available	PANTHER	PTHR10366:SF431	UDP-GLUCURONATE 4-EPIMERASE 6	coord: 1..161 score: 5.1