Cp4.1LG12g00810 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g00810
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUDP-D-glucuronate 4-epimerase
LocationCp4.1LG12 : 486748 .. 487242 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTATTTCTTTTTCACAAAGGATATCCTCCAAGGGAAACAAATCGATATCTACAAAACTCACGACGCGAAGGAGGTGGCGCGTGACTTCACGTACATCGACGATATTGTAAAAGGCTGCCTCGGAGCATTAGACACGGCGGAGAAGTCCACCGGGAGCGGCGGAAAGAAGAAATCTCCGGCGCAGTTGAGGATTTATAACCTTGGGAATACGTCGCCGGTGCCGGTAGGGAAATTGGTGTCGGTGCTTGAGAATCTGTTGAATACAAAGGCGAAAAAGCATATAATTACTATGCCACGAAACGGCGACGTTCCGTTTACTCATGCGAATGTTAGTTTAGCGTTTAAGGATTTCGGGTACAAACCATCCACGGATCTACCCACGGGGCTCCGGAAATTCGTGAAGTGGTACGTTGGGTATTATGGAATTCAGTCGAGGGTAAAAAAGGAAAATGAGAAAAATAATAATCAGTCACCCGGGGAATCCGCTTGA

mRNA sequence

ATGGCGTATTTCTTTTTCACAAAGGATATCCTCCAAGGGAAACAAATCGATATCTACAAAACTCACGACGCGAAGGAGGTGGCGCGTGACTTCACGTACATCGACGATATTGTAAAAGGCTGCCTCGGAGCATTAGACACGGCGGAGAAGTCCACCGGGAGCGGCGGAAAGAAGAAATCTCCGGCGCAGTTGAGGATTTATAACCTTGGGAATACGTCGCCGGTGCCGGTAGGGAAATTGGTGTCGGTGCTTGAGAATCTGTTGAATACAAAGGCGAAAAAGCATATAATTACTATGCCACGAAACGGCGACGTTCCGTTTACTCATGCGAATGTTAGTTTAGCGTTTAAGGATTTCGGGTACAAACCATCCACGGATCTACCCACGGGGCTCCGGAAATTCGTGAAGTGGTACGTTGGGTATTATGGAATTCAGTCGAGGGTAAAAAAGGAAAATGAGAAAAATAATAATCAGTCACCCGGGGAATCCGCTTGA

Coding sequence (CDS)

ATGGCGTATTTCTTTTTCACAAAGGATATCCTCCAAGGGAAACAAATCGATATCTACAAAACTCACGACGCGAAGGAGGTGGCGCGTGACTTCACGTACATCGACGATATTGTAAAAGGCTGCCTCGGAGCATTAGACACGGCGGAGAAGTCCACCGGGAGCGGCGGAAAGAAGAAATCTCCGGCGCAGTTGAGGATTTATAACCTTGGGAATACGTCGCCGGTGCCGGTAGGGAAATTGGTGTCGGTGCTTGAGAATCTGTTGAATACAAAGGCGAAAAAGCATATAATTACTATGCCACGAAACGGCGACGTTCCGTTTACTCATGCGAATGTTAGTTTAGCGTTTAAGGATTTCGGGTACAAACCATCCACGGATCTACCCACGGGGCTCCGGAAATTCGTGAAGTGGTACGTTGGGTATTATGGAATTCAGTCGAGGGTAAAAAAGGAAAATGAGAAAAATAATAATCAGTCACCCGGGGAATCCGCTTGA

Protein sequence

MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKSPAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFGYKPSTDLPTGLRKFVKWYVGYYGIQSRVKKENEKNNNQSPGESA
Homology
[Close]
BLAST of Cp4.1LG12g00810 vs. Swiss-Prot
Match: GAE6_ARATH (UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 5.8e-72
Identity = 128/151 (84.77%), Postives = 139/151 (92.05%), Query Frame = 1 

Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFTKDIL GK IDIY+T D +EVARDFTYIDDIVKGC+GALDTAEKSTGSGGKK+ 
Sbjct: 302 MAYFFFTKDILHGKSIDIYRTQDNQEVARDFTYIDDIVKGCVGALDTAEKSTGSGGKKRG 361

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
            AQLR+YNLGNTSPVPVG+LVS+LE LL TKAKKH+I MPRNGDVP+THANVSLA+KDFG
Sbjct: 362 QAQLRVYNLGNTSPVPVGRLVSILEGLLGTKAKKHLIKMPRNGDVPYTHANVSLAYKDFG 421

Query: 121 YKPSTDLPTGLRKFVKWYVGYYGIQSRVKKE 152
           YKP+TDL  GLRKFVKWYVGYYGIQ RVKKE
Sbjct: 422 YKPTTDLAAGLRKFVKWYVGYYGIQPRVKKE 452

[Close]
BLAST of Cp4.1LG12g00810 vs. Swiss-Prot
Match: GAE4_ARATH (UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana GN=GAE4 PE=1 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 1.8e-57
Identity = 104/142 (73.24%), Postives = 122/142 (85.92%), Query Frame = 1 

Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFTKDIL+GK I I+++ +   VARDFTYIDDIVKGCL ALDTAEKSTGSGGKK+ 
Sbjct: 287 MAYFFFTKDILKGKSISIFESANHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRG 346

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
           PAQLR++NLGNTSPVPV  LV +LE  L  KAKK++I MPRNGDVPFTHAN+SLA ++ G
Sbjct: 347 PAQLRVFNLGNTSPVPVSDLVRILERQLKVKAKKNLIKMPRNGDVPFTHANISLAQRELG 406

Query: 121 YKPSTDLPTGLRKFVKWYVGYY 143
           YKP+TDL TGL+KFV+WY+ YY
Sbjct: 407 YKPTTDLQTGLKKFVRWYLSYY 428

[Close]
BLAST of Cp4.1LG12g00810 vs. Swiss-Prot
Match: GAE5_ARATH (UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thaliana GN=GAE5 PE=2 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 1.8e-57
Identity = 105/142 (73.94%), Postives = 121/142 (85.21%), Query Frame = 1 

Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFTKDIL+GK I ++++ D   VARDFTYIDDIVKGCLGALDTAEKSTGSGGKKK 
Sbjct: 286 MAYFFFTKDILKGKTITVFESPDKGSVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKG 345

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
           PA  RIYNLGNTSPVPV KLV++LE LL  KAKK I+ +PRNGDV FTHAN++LA  + G
Sbjct: 346 PAMFRIYNLGNTSPVPVTKLVTILEKLLKMKAKKKIMPLPRNGDVEFTHANITLAQAELG 405

Query: 121 YKPSTDLPTGLRKFVKWYVGYY 143
           YKP+ DL TGL+KFVKWY+G+Y
Sbjct: 406 YKPAVDLETGLKKFVKWYMGFY 427

[Close]
BLAST of Cp4.1LG12g00810 vs. Swiss-Prot
Match: GAE2_ARATH (UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana GN=GAE2 PE=2 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.4e-57
Identity = 104/142 (73.24%), Postives = 124/142 (87.32%), Query Frame = 1 

Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFT+DIL+GK I I++  +   VARDFTYIDDIVKGCLGALDTAEKSTGSGGKK+ 
Sbjct: 282 MAYFFFTRDILKGKAISIFEGANHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRG 341

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
            AQLR++NLGNTSPVPV  LVS+LE LL  KAK++++ +PRNGDVPFTHAN+S A ++FG
Sbjct: 342 AAQLRVFNLGNTSPVPVTDLVSILERLLKVKAKRNMMKLPRNGDVPFTHANISSAQREFG 401

Query: 121 YKPSTDLPTGLRKFVKWYVGYY 143
           YKPSTDL TGL+KFV+WY+GYY
Sbjct: 402 YKPSTDLQTGLKKFVRWYLGYY 423

[Close]
BLAST of Cp4.1LG12g00810 vs. Swiss-Prot
Match: GAE3_ARATH (UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 8.4e-55
Identity = 100/142 (70.42%), Postives = 121/142 (85.21%), Query Frame = 1 

Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFT+DIL+GK I I++  +   VARDFTYIDDIVKGCLGALDTAEKSTGSGGKK+ 
Sbjct: 281 MAYFFFTRDILKGKAISIFEGVNHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRG 340

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
            AQLR++NLGNTSPVPV  LV++LE LL  KAK++I+ +PRNGDV FTHAN+S A ++ G
Sbjct: 341 AAQLRVFNLGNTSPVPVTDLVTILERLLKVKAKRNIMKLPRNGDVQFTHANISSAQRELG 400

Query: 121 YKPSTDLPTGLRKFVKWYVGYY 143
           YKP+TDL TGL+KF +WY+GYY
Sbjct: 401 YKPTTDLQTGLKKFARWYLGYY 422

[Close]
BLAST of Cp4.1LG12g00810 vs. TrEMBL
Match: A0A0A0LLA2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G146400 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 3.2e-85
Identity = 157/164 (95.73%), Postives = 160/164 (97.56%), Query Frame = 1 

Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKK 
Sbjct: 300 MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKG 359

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
           PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLA KDFG
Sbjct: 360 PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLALKDFG 419

Query: 121 YKPSTDLPTGLRKFVKWYVGYYGIQSRVKKENEKNNNQSPGESA 165
           YKP+TDLPTGLRKFVKWYVGYYGIQSRV+KE+EKNNN SP ESA
Sbjct: 420 YKPTTDLPTGLRKFVKWYVGYYGIQSRVRKESEKNNNHSPEESA 463

[Close]
BLAST of Cp4.1LG12g00810 vs. TrEMBL
Match: B9S9Z1_RICCO (UDP-glucuronate 5-epimerase, putative OS=Ricinus communis GN=RCOM_0523750 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 3.3e-74
Identity = 133/155 (85.81%), Postives = 148/155 (95.48%), Query Frame = 1 

Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFTKDILQGKQIDIY+T D K+VARDFTYIDD+VKGC+GALDTAEKSTGSGGKKK 
Sbjct: 241 MAYFFFTKDILQGKQIDIYQTQDQKQVARDFTYIDDVVKGCVGALDTAEKSTGSGGKKKG 300

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
           PAQLR+YNLGNTSPVPVGKLVS+LENLLNTKAKKH+I MPRNGDVP+THANVSLA+KDFG
Sbjct: 301 PAQLRVYNLGNTSPVPVGKLVSILENLLNTKAKKHVIKMPRNGDVPYTHANVSLAYKDFG 360

Query: 121 YKPSTDLPTGLRKFVKWYVGYYGIQSRVKKENEKN 156
           YKP+TDL +GLRKFVKWYVGYYGIQ++VK +N+ N
Sbjct: 361 YKPTTDLSSGLRKFVKWYVGYYGIQTKVKTQNDIN 395

[Close]
BLAST of Cp4.1LG12g00810 vs. TrEMBL
Match: A0A067KSZ3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01088 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 4.3e-74
Identity = 134/158 (84.81%), Postives = 149/158 (94.30%), Query Frame = 1 

Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFTKDIL GK ID+Y+T D K+VARDFTYIDDIVKGC+GALDTAEKSTGSGGKKK 
Sbjct: 297 MAYFFFTKDILHGKPIDVYQTQDEKQVARDFTYIDDIVKGCVGALDTAEKSTGSGGKKKG 356

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
           PAQLR+YNLGNTSPVPVGKLV++LE+LLNTKAKKHII MPRNGDVP+THANVSLA+KDFG
Sbjct: 357 PAQLRVYNLGNTSPVPVGKLVAILESLLNTKAKKHIIKMPRNGDVPYTHANVSLAYKDFG 416

Query: 121 YKPSTDLPTGLRKFVKWYVGYYGIQSRVKKENEKNNNQ 159
           YKP+TDL +GLRKFVKWYV YYGIQ+RVKKENE NN++
Sbjct: 417 YKPTTDLSSGLRKFVKWYVSYYGIQTRVKKENEINNSE 454

[Close]
BLAST of Cp4.1LG12g00810 vs. TrEMBL
Match: A0A0D2T8P1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G153500 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 2.8e-73
Identity = 136/163 (83.44%), Postives = 148/163 (90.80%), Query Frame = 1 

Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFTKDILQGK IDIYKTHD KEVARDFTYIDD+VKGCLGALDTAEKSTGSGGKKK 
Sbjct: 296 MAYFFFTKDILQGKSIDIYKTHDQKEVARDFTYIDDVVKGCLGALDTAEKSTGSGGKKKG 355

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
            AQLR+YNLGNTSPVPVG+LVS+LE LL+TKAKKH+ITMPRNGDVPFTHANV+LAFKDFG
Sbjct: 356 AAQLRVYNLGNTSPVPVGRLVSILEGLLSTKAKKHVITMPRNGDVPFTHANVTLAFKDFG 415

Query: 121 YKPSTDLPTGLRKFVKWYVGYYGIQSRVKKENEKNNNQSPGES 164
           YKP+TDL TGLRKFVKWY+ YYGIQS+  KE     +Q+ GES
Sbjct: 416 YKPTTDLSTGLRKFVKWYISYYGIQSKTGKE-----SQATGES 453

[Close]
BLAST of Cp4.1LG12g00810 vs. TrEMBL
Match: D2WK28_GOSHI (UDP-D-glucuronic acid 4-epimerase OS=Gossypium hirsutum GN=GAE2 PE=2 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 8.2e-73
Identity = 135/163 (82.82%), Postives = 148/163 (90.80%), Query Frame = 1 

Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFTKDILQGK IDIYKTHD KEVARDFTYIDD+VKGCLGALDTAEKSTGSG KKK 
Sbjct: 296 MAYFFFTKDILQGKSIDIYKTHDQKEVARDFTYIDDVVKGCLGALDTAEKSTGSGEKKKG 355

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
            AQLR+YNLGNTSPVPVG+LVS+LE LL+TKAKKH+ITMPRNGDVPFTHANV+LAFKDFG
Sbjct: 356 AAQLRVYNLGNTSPVPVGRLVSILEGLLSTKAKKHVITMPRNGDVPFTHANVTLAFKDFG 415

Query: 121 YKPSTDLPTGLRKFVKWYVGYYGIQSRVKKENEKNNNQSPGES 164
           YKP+TDL TGLRKFVKWY+ YYGIQS+ +KE     +Q+ GES
Sbjct: 416 YKPTTDLSTGLRKFVKWYISYYGIQSKTRKE-----SQATGES 453

[Close]
BLAST of Cp4.1LG12g00810 vs. TAIR10
Match: AT3G23820.1 (AT3G23820.1 UDP-D-glucuronate 4-epimerase 6)

HSP 1 Score: 271.6 bits (693), Expect = 3.3e-73
Identity = 128/151 (84.77%), Postives = 139/151 (92.05%), Query Frame = 1 

Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFTKDIL GK IDIY+T D +EVARDFTYIDDIVKGC+GALDTAEKSTGSGGKK+ 
Sbjct: 302 MAYFFFTKDILHGKSIDIYRTQDNQEVARDFTYIDDIVKGCVGALDTAEKSTGSGGKKRG 361

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
            AQLR+YNLGNTSPVPVG+LVS+LE LL TKAKKH+I MPRNGDVP+THANVSLA+KDFG
Sbjct: 362 QAQLRVYNLGNTSPVPVGRLVSILEGLLGTKAKKHLIKMPRNGDVPYTHANVSLAYKDFG 421

Query: 121 YKPSTDLPTGLRKFVKWYVGYYGIQSRVKKE 152
           YKP+TDL  GLRKFVKWYVGYYGIQ RVKKE
Sbjct: 422 YKPTTDLAAGLRKFVKWYVGYYGIQPRVKKE 452

[Close]
BLAST of Cp4.1LG12g00810 vs. TAIR10
Match: AT2G45310.1 (AT2G45310.1 UDP-D-glucuronate 4-epimerase 4)

HSP 1 Score: 223.4 bits (568), Expect = 1.0e-58
Identity = 104/142 (73.24%), Postives = 122/142 (85.92%), Query Frame = 1 

Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFTKDIL+GK I I+++ +   VARDFTYIDDIVKGCL ALDTAEKSTGSGGKK+ 
Sbjct: 287 MAYFFFTKDILKGKSISIFESANHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRG 346

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
           PAQLR++NLGNTSPVPV  LV +LE  L  KAKK++I MPRNGDVPFTHAN+SLA ++ G
Sbjct: 347 PAQLRVFNLGNTSPVPVSDLVRILERQLKVKAKKNLIKMPRNGDVPFTHANISLAQRELG 406

Query: 121 YKPSTDLPTGLRKFVKWYVGYY 143
           YKP+TDL TGL+KFV+WY+ YY
Sbjct: 407 YKPTTDLQTGLKKFVRWYLSYY 428

[Close]
BLAST of Cp4.1LG12g00810 vs. TAIR10
Match: AT4G12250.1 (AT4G12250.1 UDP-D-glucuronate 4-epimerase 5)

HSP 1 Score: 223.4 bits (568), Expect = 1.0e-58
Identity = 105/142 (73.94%), Postives = 121/142 (85.21%), Query Frame = 1 

Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFTKDIL+GK I ++++ D   VARDFTYIDDIVKGCLGALDTAEKSTGSGGKKK 
Sbjct: 286 MAYFFFTKDILKGKTITVFESPDKGSVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKG 345

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
           PA  RIYNLGNTSPVPV KLV++LE LL  KAKK I+ +PRNGDV FTHAN++LA  + G
Sbjct: 346 PAMFRIYNLGNTSPVPVTKLVTILEKLLKMKAKKKIMPLPRNGDVEFTHANITLAQAELG 405

Query: 121 YKPSTDLPTGLRKFVKWYVGYY 143
           YKP+ DL TGL+KFVKWY+G+Y
Sbjct: 406 YKPAVDLETGLKKFVKWYMGFY 427

[Close]
BLAST of Cp4.1LG12g00810 vs. TAIR10
Match: AT1G02000.1 (AT1G02000.1 UDP-D-glucuronate 4-epimerase 2)

HSP 1 Score: 223.0 bits (567), Expect = 1.3e-58
Identity = 104/142 (73.24%), Postives = 124/142 (87.32%), Query Frame = 1 

Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFT+DIL+GK I I++  +   VARDFTYIDDIVKGCLGALDTAEKSTGSGGKK+ 
Sbjct: 282 MAYFFFTRDILKGKAISIFEGANHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRG 341

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
            AQLR++NLGNTSPVPV  LVS+LE LL  KAK++++ +PRNGDVPFTHAN+S A ++FG
Sbjct: 342 AAQLRVFNLGNTSPVPVTDLVSILERLLKVKAKRNMMKLPRNGDVPFTHANISSAQREFG 401

Query: 121 YKPSTDLPTGLRKFVKWYVGYY 143
           YKPSTDL TGL+KFV+WY+GYY
Sbjct: 402 YKPSTDLQTGLKKFVRWYLGYY 423

[Close]
BLAST of Cp4.1LG12g00810 vs. TAIR10
Match: AT4G00110.1 (AT4G00110.1 UDP-D-glucuronate 4-epimerase 3)

HSP 1 Score: 214.5 bits (545), Expect = 4.8e-56
Identity = 100/142 (70.42%), Postives = 121/142 (85.21%), Query Frame = 1 

Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFT+DIL+GK I I++  +   VARDFTYIDDIVKGCLGALDTAEKSTGSGGKK+ 
Sbjct: 281 MAYFFFTRDILKGKAISIFEGVNHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRG 340

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
            AQLR++NLGNTSPVPV  LV++LE LL  KAK++I+ +PRNGDV FTHAN+S A ++ G
Sbjct: 341 AAQLRVFNLGNTSPVPVTDLVTILERLLKVKAKRNIMKLPRNGDVQFTHANISSAQRELG 400

Query: 121 YKPSTDLPTGLRKFVKWYVGYY 143
           YKP+TDL TGL+KF +WY+GYY
Sbjct: 401 YKPTTDLQTGLKKFARWYLGYY 422

[Close]
BLAST of Cp4.1LG12g00810 vs. NCBI nr
Match: gi|449442397|ref|XP_004138968.1| (PREDICTED: UDP-glucuronate 4-epimerase 6 [Cucumis sativus])

HSP 1 Score: 322.4 bits (825), Expect = 4.6e-85
Identity = 157/164 (95.73%), Postives = 160/164 (97.56%), Query Frame = 1 

Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKK 
Sbjct: 300 MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKG 359

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
           PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLA KDFG
Sbjct: 360 PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLALKDFG 419

Query: 121 YKPSTDLPTGLRKFVKWYVGYYGIQSRVKKENEKNNNQSPGESA 165
           YKP+TDLPTGLRKFVKWYVGYYGIQSRV+KE+EKNNN SP ESA
Sbjct: 420 YKPTTDLPTGLRKFVKWYVGYYGIQSRVRKESEKNNNHSPEESA 463

[Close]
BLAST of Cp4.1LG12g00810 vs. NCBI nr
Match: gi|659114775|ref|XP_008457221.1| (PREDICTED: UDP-glucuronate 4-epimerase 6 [Cucumis melo])

HSP 1 Score: 303.1 bits (775), Expect = 2.9e-79
Identity = 147/154 (95.45%), Postives = 150/154 (97.40%), Query Frame = 1 

Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKK 
Sbjct: 300 MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKG 359

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
           PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLA KDFG
Sbjct: 360 PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLALKDFG 419

Query: 121 YKPSTDLPTGLRKFVKWYVGYYGIQSRVKKENEK 155
           YKP+TDLPTGLRKFVKWYVGYYGIQSRVK++  K
Sbjct: 420 YKPTTDLPTGLRKFVKWYVGYYGIQSRVKRKVRK 453

[Close]
BLAST of Cp4.1LG12g00810 vs. NCBI nr
Match: gi|223538048|gb|EEF39661.1| (UDP-glucuronate 5-epimerase, putative [Ricinus communis])

HSP 1 Score: 285.8 bits (730), Expect = 4.8e-74
Identity = 133/155 (85.81%), Postives = 148/155 (95.48%), Query Frame = 1 

Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFTKDILQGKQIDIY+T D K+VARDFTYIDD+VKGC+GALDTAEKSTGSGGKKK 
Sbjct: 241 MAYFFFTKDILQGKQIDIYQTQDQKQVARDFTYIDDVVKGCVGALDTAEKSTGSGGKKKG 300

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
           PAQLR+YNLGNTSPVPVGKLVS+LENLLNTKAKKH+I MPRNGDVP+THANVSLA+KDFG
Sbjct: 301 PAQLRVYNLGNTSPVPVGKLVSILENLLNTKAKKHVIKMPRNGDVPYTHANVSLAYKDFG 360

Query: 121 YKPSTDLPTGLRKFVKWYVGYYGIQSRVKKENEKN 156
           YKP+TDL +GLRKFVKWYVGYYGIQ++VK +N+ N
Sbjct: 361 YKPTTDLSSGLRKFVKWYVGYYGIQTKVKTQNDIN 395

[Close]
BLAST of Cp4.1LG12g00810 vs. NCBI nr
Match: gi|1000957911|ref|XP_002522810.2| (PREDICTED: LOW QUALITY PROTEIN: UDP-glucuronate 4-epimerase 6 [Ricinus communis])

HSP 1 Score: 285.8 bits (730), Expect = 4.8e-74
Identity = 133/155 (85.81%), Postives = 148/155 (95.48%), Query Frame = 1 

Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFTKDILQGKQIDIY+T D K+VARDFTYIDD+VKGC+GALDTAEKSTGSGGKKK 
Sbjct: 302 MAYFFFTKDILQGKQIDIYQTQDQKQVARDFTYIDDVVKGCVGALDTAEKSTGSGGKKKG 361

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
           PAQLR+YNLGNTSPVPVGKLVS+LENLLNTKAKKH+I MPRNGDVP+THANVSLA+KDFG
Sbjct: 362 PAQLRVYNLGNTSPVPVGKLVSILENLLNTKAKKHVIKMPRNGDVPYTHANVSLAYKDFG 421

Query: 121 YKPSTDLPTGLRKFVKWYVGYYGIQSRVKKENEKN 156
           YKP+TDL +GLRKFVKWYVGYYGIQ++VK +N+ N
Sbjct: 422 YKPTTDLSSGLRKFVKWYVGYYGIQTKVKTQNDIN 456

[Close]
BLAST of Cp4.1LG12g00810 vs. NCBI nr
Match: gi|502135150|ref|XP_004502237.1| (PREDICTED: UDP-glucuronate 4-epimerase 6 [Cicer arietinum])

HSP 1 Score: 285.8 bits (730), Expect = 4.8e-74
Identity = 137/164 (83.54%), Postives = 152/164 (92.68%), Query Frame = 1 

Query: 1   MAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKS 60
           MAYFFFTKDIL GK +D+Y+T D KEVARDFTYIDDIVKGC+GALDTAEKSTGSGGKK+ 
Sbjct: 289 MAYFFFTKDILHGKTVDVYQTQDGKEVARDFTYIDDIVKGCVGALDTAEKSTGSGGKKRG 348

Query: 61  PAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANVSLAFKDFG 120
           PAQLRIYNLGNTSPVPVGKLVS+LENLL+TKAKKHII MPRNGDVP+THANV+LA+KDFG
Sbjct: 349 PAQLRIYNLGNTSPVPVGKLVSILENLLSTKAKKHIIKMPRNGDVPYTHANVTLAYKDFG 408

Query: 121 YKPSTDLPTGLRKFVKWYVGYYGIQSRVKKENEKNNNQSPGESA 165
           YKP+TDL TGLRKFVKWYV YYGIQSR+KKEN  N+N+ P +SA
Sbjct: 409 YKPTTDLATGLRKFVKWYVRYYGIQSRLKKENH-NDNELPEDSA 451

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g00810 vs. Swiss-Prot
Match NameE-valueIdentityDescription
GAE6_ARATH5.8e-7284.77UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1 SV=1[more]
GAE4_ARATH1.8e-5773.24UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana GN=GAE4 PE=1 SV=1[more]
GAE5_ARATH1.8e-5773.94UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thaliana GN=GAE5 PE=2 SV=1[more]
GAE2_ARATH2.4e-5773.24UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana GN=GAE2 PE=2 SV=1[more]
GAE3_ARATH8.4e-5570.42UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2 SV=1[more]
BLAST of Cp4.1LG12g00810 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLA2_CUCSA3.2e-8595.73Uncharacterized protein OS=Cucumis sativus GN=Csa_2G146400 PE=4 SV=1[more]
B9S9Z1_RICCO3.3e-7485.81UDP-glucuronate 5-epimerase, putative OS=Ricinus communis GN=RCOM_0523750 PE=4 S... [more]
A0A067KSZ3_JATCU4.3e-7484.81Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01088 PE=4 SV=1[more]
A0A0D2T8P1_GOSRA2.8e-7383.44Uncharacterized protein OS=Gossypium raimondii GN=B456_011G153500 PE=4 SV=1[more]
D2WK28_GOSHI8.2e-7382.82UDP-D-glucuronic acid 4-epimerase OS=Gossypium hirsutum GN=GAE2 PE=2 SV=1[more]
BLAST of Cp4.1LG12g00810 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G23820.13.3e-7384.77 UDP-D-glucuronate 4-epimerase 6[more]
AT2G45310.11.0e-5873.24 UDP-D-glucuronate 4-epimerase 4[more]
AT4G12250.11.0e-5873.94 UDP-D-glucuronate 4-epimerase 5[more]
AT1G02000.11.3e-5873.24 UDP-D-glucuronate 4-epimerase 2[more]
AT4G00110.14.8e-5670.42 UDP-D-glucuronate 4-epimerase 3[more]
BLAST of Cp4.1LG12g00810 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449442397|ref|XP_004138968.1|4.6e-8595.73PREDICTED: UDP-glucuronate 4-epimerase 6 [Cucumis sativus][more]
gi|659114775|ref|XP_008457221.1|2.9e-7995.45PREDICTED: UDP-glucuronate 4-epimerase 6 [Cucumis melo][more]
gi|223538048|gb|EEF39661.1|4.8e-7485.81UDP-glucuronate 5-epimerase, putative [Ricinus communis][more]
gi|1000957911|ref|XP_002522810.2|4.8e-7485.81PREDICTED: LOW QUALITY PROTEIN: UDP-glucuronate 4-epimerase 6 [Ricinus communis][more]
gi|502135150|ref|XP_004502237.1|4.8e-7483.54PREDICTED: UDP-glucuronate 4-epimerase 6 [Cicer arietinum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016857racemase and epimerase activity, acting on carbohydrates and derivatives
Vocabulary: INTERPRO
TermDefinition
IPR016040NAD(P)-bd_dom
IPR008089Nuc_sugar_epim
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0009684 indoleacetic acid biosynthetic process
biological_process GO:0009117 nucleotide metabolic process
biological_process GO:0006569 tryptophan catabolic process
cellular_component GO:0005768 endosome
cellular_component GO:0005802 trans-Golgi network
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0050662 coenzyme binding
molecular_function GO:0050379 UDP-glucuronate 5'-epimerase activity
molecular_function GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g00810.1Cp4.1LG12g00810.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008089Nucleotide sugar epimerasePRINTSPR01713NUCEPIMERASEcoord: 29..44
score: 2.8E-19coord: 104..121
score: 2.8E-19coord: 64..79
score: 2.8
IPR016040NAD(P)-binding domainunknownSSF51735NAD(P)-binding Rossmann-fold domainscoord: 3..144
score: 9.78
NoneNo IPR availableGENE3DG3DSA:3.90.25.10coord: 6..143
score: 2.5
NoneNo IPR availablePANTHERPTHR10366NAD DEPENDENT EPIMERASE/DEHYDRATASEcoord: 1..161
score: 5.1
NoneNo IPR availablePANTHERPTHR10366:SF431UDP-GLUCURONATE 4-EPIMERASE 6coord: 1..161
score: 5.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g00810MELO3C020428.2Melon (DHL92) v3.6.1cpemedB166
Cp4.1LG12g00810CsaV3_2G011740Cucumber (Chinese Long) v3cpecucB0151
Cp4.1LG12g00810Bhi12G001285Wax gourdcpewgoB0176
Cp4.1LG12g00810CsGy2G009520Cucumber (Gy14) v2cgybcpeB180
Cp4.1LG12g00810Carg10150Silver-seed gourdcarcpeB0322
Cp4.1LG12g00810Carg11049Silver-seed gourdcarcpeB1498
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG12g00810Cp4.1LG17g02910Cucurbita pepo (Zucchini)cpecpeB161
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g00810Cucurbita pepo (Zucchini)cpecpeB184
Cp4.1LG12g00810Cucurbita pepo (Zucchini)cpecpeB194
Cp4.1LG12g00810Cucumber (Gy14) v1cgycpeB0546
Cp4.1LG12g00810Cucumber (Gy14) v1cgycpeB0670
Cp4.1LG12g00810Cucumber (Gy14) v1cgycpeB0698
Cp4.1LG12g00810Cucurbita maxima (Rimu)cmacpeB259
Cp4.1LG12g00810Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g00810Cucurbita maxima (Rimu)cmacpeB895
Cp4.1LG12g00810Cucurbita moschata (Rifu)cmocpeB223
Cp4.1LG12g00810Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g00810Cucurbita moschata (Rifu)cmocpeB765
Cp4.1LG12g00810Cucurbita moschata (Rifu)cmocpeB833
Cp4.1LG12g00810Wild cucumber (PI 183967)cpecpiB127
Cp4.1LG12g00810Wild cucumber (PI 183967)cpecpiB136
Cp4.1LG12g00810Wild cucumber (PI 183967)cpecpiB132
Cp4.1LG12g00810Cucumber (Chinese Long) v2cpecuB128
Cp4.1LG12g00810Cucumber (Chinese Long) v2cpecuB131
Cp4.1LG12g00810Bottle gourd (USVL1VR-Ls)cpelsiB101
Cp4.1LG12g00810Watermelon (Charleston Gray)cpewcgB138
Cp4.1LG12g00810Watermelon (Charleston Gray)cpewcgB144
Cp4.1LG12g00810Watermelon (97103) v1cpewmB151
Cp4.1LG12g00810Watermelon (97103) v1cpewmB161
Cp4.1LG12g00810Melon (DHL92) v3.5.1cpemeB137
Cp4.1LG12g00810Melon (DHL92) v3.5.1cpemeB141
Cp4.1LG12g00810Cucumber (Gy14) v2cgybcpeB175
Cp4.1LG12g00810Cucumber (Gy14) v2cgybcpeB176
Cp4.1LG12g00810Melon (DHL92) v3.6.1cpemedB170
Cp4.1LG12g00810Silver-seed gourdcarcpeB1328
Cp4.1LG12g00810Silver-seed gourdcarcpeB1501
Cp4.1LG12g00810Cucumber (Chinese Long) v3cpecucB0146
Cp4.1LG12g00810Cucumber (Chinese Long) v3cpecucB0153
Cp4.1LG12g00810Wax gourdcpewgoB0192