Cp4.1LG12g00790.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG12g00790.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	MADS-box transcription factor family protein
Location	Cp4.1LG12 : 424186 .. 424910 (-)
Sequence length	468

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAACCAAAATTACAGAGAAAATCCATTCCGATGAAGAAAACTCTCGGCCGTCAAAAGATCGAAATCAAGAAGCTAGAGAAGAAGAGCAGCAAACAAGTGACGTTTTCGAAGCGCCGTGCCGGACTTTTCAAGAAGGCCGGCGAGCTTTCTGTGCTCTGCGGAGCAGAGGTTGCCATCATCGTCTTCTCTCCGAACGATAAGGTTTTTTGTTTCGGTCATCCGGATGTTGACGTGCTTTTGGATCGGTACCTGACCGGGAATTTGTCGCCGCCGAAGCCGGCGGAGAGTTACGTTCCTGTAGCGGAGTTTAATCGCGATTTCGCCGATTTAGTATTGGAGTTCGAAGCGGAGAAGAAGCGAGCGGAGGAATTGATTCAGGCGTCGGAGGAGTCGAGAAATAGCGGCGGATTTTGGTGGGAGGAGGCGGTGGAAGGGATGAGGTTAGAGGAATTGAAGGAGTTCCGATCGTCATTGATGGATTTGAGAGCTAAAGTGGCGGAGAAAGTCGAGAAATTGACAGCGGTTAGAATCGGAGGACCTCTGTTACCGGCGCTACCGCCACCGCCACCGCCGCAGCCGATGACGCCGCCGTCGTTTCACCTCGCCGGGAACCACCATGTCGCGACGGGATTAGGATTTTTCTAGATTTTTTGAGTTATTTTTCCCTACATTTTATTTTCCTATAAACTGTTTATAGAGTGATCTATTTTGGAAAGTAA

mRNA sequence

ATGGAGGAACCAAAATTACAGAGAAAATCCATTCCGATGAAGAAAACTCTCGGCCGTCAAAAGATCGAAATCAAGAAGCTAGAGAAGAAGAGCAGCAAACAAGTGACGTTTTCGAAGCGCCGTGCCGGACTTTTCAAGAAGGCCGGCGAGCTTTCTGTGCTCTGCGGAGCAGAGGTTGCCATCATCGTCTTCTCTCCGAACGATAAGGTTTTTTGTTTCGGTCATCCGGATGTTGACGTGCTTTTGGATCGGTACCTGACCGGGAATTTGTCGCCGCCGAAGCCGGCGGAGAGTTACGTTCCTGTAGCGGAGTTTAATCGCGATTTCGCCGATTTAGTATTGGAGTTCGAAGCGGAGAAGAAGCGAGCGGAGGAATTGATTCAGGCGTCGGAGGAGTCGAGAAATAGCGGCGGATTTTGGTGGGAGGAGGCGGTGGAAGGGATGAGAGTGATCTATTTTGGAAAGTAA

Coding sequence (CDS)

ATGGAGGAACCAAAATTACAGAGAAAATCCATTCCGATGAAGAAAACTCTCGGCCGTCAAAAGATCGAAATCAAGAAGCTAGAGAAGAAGAGCAGCAAACAAGTGACGTTTTCGAAGCGCCGTGCCGGACTTTTCAAGAAGGCCGGCGAGCTTTCTGTGCTCTGCGGAGCAGAGGTTGCCATCATCGTCTTCTCTCCGAACGATAAGGTTTTTTGTTTCGGTCATCCGGATGTTGACGTGCTTTTGGATCGGTACCTGACCGGGAATTTGTCGCCGCCGAAGCCGGCGGAGAGTTACGTTCCTGTAGCGGAGTTTAATCGCGATTTCGCCGATTTAGTATTGGAGTTCGAAGCGGAGAAGAAGCGAGCGGAGGAATTGATTCAGGCGTCGGAGGAGTCGAGAAATAGCGGCGGATTTTGGTGGGAGGAGGCGGTGGAAGGGATGAGAGTGATCTATTTTGGAAAGTAA

Protein sequence

MEEPKLQRKSIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFCFGHPDVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFADLVLEFEAEKKRAEELIQASEESRNSGGFWWEEAVEGMRVIYFGK

Homology

[Close]

BLAST of Cp4.1LG12g00790.1 vs. Swiss-Prot
Match: AGL62_ARATH (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.4e-27
Identity = 67/142 (47.18%), Postives = 93/142 (65.49%), Query Frame = 1


Query: 13  MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFC 72
           +KK+ GRQKIE+ K++ +S+ QVTFSKRR+GLFKKA EL  LCGAEVAI+VFSP  KVF 
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 73  FGHPDVDVLLDRYLTGNLSPP--------KPAESYVPVAEFNRDFADLVLEFEAEKKRAE 132
           FGHP+VD ++DR++  N  PP        +       V + N     ++ + E EKK+ +
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 133 ELIQASEESRNSGGFWWEEAVE 147
           EL +  E+++  G  WWE+ VE
Sbjct: 122 ELKKIREKTKALGN-WWEDPVE 142

[Close]

BLAST of Cp4.1LG12g00790.1 vs. Swiss-Prot
Match: AGL61_ARATH (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 4.6e-26
Identity = 68/143 (47.55%), Postives = 94/143 (65.73%), Query Frame = 1


Query: 14  KKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFCF 73
           K+++GRQKI + K++K+S +QVTFSKRRAGLFKKA EL  LCGAE+ IIVFSP  K F F
Sbjct: 59  KESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSF 118

Query: 74  GHPDVDVLLDRYLT-GNLSPPKPAE---SYVPVAEFNRDFADLVLEFEAEKKRAEELIQA 133
           GHP V+ +LDRY++  N+S  +  +   S     E N     ++ E E EKK+ + + + 
Sbjct: 119 GHPSVESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEM 178

Query: 134 SEES-RNSGGFWWEEAVEGMRVI 152
            +ES R S   WWE+ VE M ++
Sbjct: 179 RKESVRRSMINWWEKPVEEMNMV 201

[Close]

BLAST of Cp4.1LG12g00790.1 vs. Swiss-Prot
Match: AGL23_ARATH (Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana GN=AGL23 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.6e-23
Identity = 64/139 (46.04%), Postives = 91/139 (65.47%), Query Frame = 1


Query: 13  MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFC 72
           +KKTLGR+K+EI K+ K+S+ QVTFSKR+AGLFKKA E   LC A++A+IVFSP  KVF 
Sbjct: 2   VKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFS 61

Query: 73  FGHPDVDVLLDRY---LTGNLSPPKPAESY--VPVAEFNRDFADLVLEFEAEKKRAEELI 132
           FGHP+VDVLLD +   + G+ +     ESY  + V   N+ + ++  E E E+K  +   
Sbjct: 62  FGHPNVDVLLDHFRGCVVGH-NNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQKNKQSRA 121

Query: 133 QASEESRNSGGFWWEEAVE 147
           Q   E+ N+  +W +  +E
Sbjct: 122 QNERENENAEEWWSKSPLE 139

[Close]

BLAST of Cp4.1LG12g00790.1 vs. Swiss-Prot
Match: AGL28_ARATH (Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana GN=AGL28 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.2e-20
Identity = 54/137 (39.42%), Postives = 85/137 (62.04%), Query Frame = 1


Query: 14  KKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFCF 73
           +K LGR+KIE+ K+  +S+ QVTFSKRR+GLFKK  EL  LC AE+AIIVFSP+ K + F
Sbjct: 3   RKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSF 62

Query: 74  GHPDVDVLLD----RYLTGNLSPPKPAESYVPVAEFNRDFADLVLEFEAEKKRAEELIQA 133
           GHP+V+ LLD    R +  N +    + + + +   N    +++ E E E++  + ++Q 
Sbjct: 63  GHPNVNKLLDHSLGRVIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIVQN 122

Query: 134 SEESRNSGGFWWEEAVE 147
             E++++  +W     E
Sbjct: 123 ERENKDAEKWWRNSPTE 139

[Close]

BLAST of Cp4.1LG12g00790.1 vs. Swiss-Prot
Match: AGL29_ARATH (Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana GN=AGL29 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.6e-16
Identity = 50/135 (37.04%), Postives = 87/135 (64.44%), Query Frame = 1


Query: 17  LGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFCFGHP 76
           +GR+KI+++ ++  +++QVTFSKRR GLFKKA EL+ LC AE+ I+VFSP  K F +G P
Sbjct: 1   MGRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKP 60

Query: 77  DVDVLLDRYL----TGNLSPPKPAESYVPVAEFNRDFADLV-LEFEAEKKRAEELIQASE 136
           ++D + +R++      +    + + +Y P  +   +  DL+  E EAEK+R E   ++ E
Sbjct: 61  NLDSVAERFMREYDDSDSGDEEKSGNYRPKLKRLSERLDLLNQEVEAEKERGE---KSQE 120

Query: 137 ESRNSGGFWWEEAVE 147
           +  ++G   ++E++E
Sbjct: 121 KLESAGDERFKESIE 132

[Close]

BLAST of Cp4.1LG12g00790.1 vs. TrEMBL
Match: A0A0A0LE01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G860240 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 4.1e-66
Identity = 127/141 (90.07%), Postives = 137/141 (97.16%), Query Frame = 1


Query: 10  SIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDK 69
           +IPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDK
Sbjct: 6   TIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDK 65

Query: 70  VFCFGHPDVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFADLVLEFEAEKKRAEELIQA 129
           +FCFGHPDVDVLLDRYLTGNLSPPKPAESY+PVAEFNRDFAD  LEFEAEKKRA ELI+A
Sbjct: 66  LFCFGHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADCALEFEAEKKRAAELIRA 125

Query: 130 SEESRNSGGFWWEEAVEGMRV 151
           +E+SR +GGFWW+EAVEG+R+
Sbjct: 126 AEDSRKNGGFWWQEAVEGLRL 146

[Close]

BLAST of Cp4.1LG12g00790.1 vs. TrEMBL
Match: A0A0A0LLS2_CUCSA (Mads box protein OS=Cucumis sativus GN=Csa_2G277060 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 4.6e-41
Identity = 86/138 (62.32%), Postives = 106/138 (76.81%), Query Frame = 1


Query: 13  MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFC 72
           MKK+LGRQKIEIKKL  KS +QVTFSKRRAGLF KA ELS+L GAE+AI+VFS  DK++ 
Sbjct: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60

Query: 73  FGHPDVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFADLVLEFEAEKKRAEELIQASEE 132
           FGHP+VD L+DR+LT N  PPKP E+Y+P+ E NRD  D+  EFE EK+RAE +      
Sbjct: 61  FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRRAERM------ 120

Query: 133 SRNSGGFWWEEAVEGMRV 151
            R +GGFWW+EA+E M +
Sbjct: 121 -RKTGGFWWDEAMECMGI 131

[Close]

BLAST of Cp4.1LG12g00790.1 vs. TrEMBL
Match: A0A0A0LW53_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181400 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 9.5e-39
Identity = 84/138 (60.87%), Postives = 105/138 (76.09%), Query Frame = 1


Query: 13  MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFC 72
           MKK+ GR+KIEIK+L+K +++QVTFSKRR GLF KA ELS+LCGAE+AI++FS   KV+ 
Sbjct: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60

Query: 73  FGHPDVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFADLVLEFEAEKKRAEELIQASEE 132
           FGHP+VD LLDR+LTGN  PPKPAE+Y+P+ E N D      EFE EKKRA E +     
Sbjct: 61  FGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERL----- 120

Query: 133 SRNSGGFWWEEAVEGMRV 151
            RNS  FWW+EA+E MR+
Sbjct: 121 -RNSERFWWDEALERMRM 132

[Close]

BLAST of Cp4.1LG12g00790.1 vs. TrEMBL
Match: A0A061FW87_THECC (Mads box protein, putative OS=Theobroma cacao GN=TCM_012489 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.5e-31
Identity = 78/150 (52.00%), Postives = 104/150 (69.33%), Query Frame = 1


Query: 9   KSIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPN- 68
           K  P  KT GRQ+IEIK+LEKKS+  VTFSKRR GLFKKA EL +L GA++ IIV SP+ 
Sbjct: 19  KKKPAGKTKGRQRIEIKQLEKKSNLHVTFSKRRKGLFKKASELCILSGAKIGIIVLSPSP 78

Query: 69  -DKVFCFGHPDVDVLLDRYLTGNLSPPKPAESYVPVA------EFNRDFADLVLEFEAEK 128
            +K FCFGHPD+D +LD+YL+GN  P    + Y  +       E ++ + + + E E EK
Sbjct: 79  REKPFCFGHPDIDTVLDQYLSGN--PAFDDQDYAALTDLPGFEEIDKQYEESLKELEKEK 138

Query: 129 KRAEELIQASEESRNSGGFWWEEAVEGMRV 151
           KR +E+ QA +   N+GGFWW+EA++GMRV
Sbjct: 139 KRGKEIEQA-KNVENNGGFWWDEAIDGMRV 165

[Close]

BLAST of Cp4.1LG12g00790.1 vs. TrEMBL
Match: W9QWE0_9ROSA (Agamous-like MADS-box protein AGL62 OS=Morus notabilis GN=L484_002950 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.2e-30
Identity = 82/143 (57.34%), Postives = 97/143 (67.83%), Query Frame = 1


Query: 14  KKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFCF 73
           KKT GRQ+IEIKKLE  S+KQVTFSKRR+GLFKKA ELSVLCG+EVA +VFSPNDK+F F
Sbjct: 11  KKTQGRQRIEIKKLENGSNKQVTFSKRRSGLFKKAAELSVLCGSEVAALVFSPNDKLFAF 70

Query: 74  GHPDVDVLLDRYLTG-NLSPPKPAESYVPVA-----EFNRDFADLVLEFEAEKKRAEELI 133
           GHP VD ++ RY  G N +    A +   V      EFNRDF + V E EAEK R  E  
Sbjct: 71  GHPSVDSVVLRYAHGTNTAAAAAASTSTNVVTHVSEEFNRDFVEAVKELEAEKTRLAE-- 130

Query: 134 QASEESRNSGG--FWWEEAVEGM 149
              ++    GG  FWW+E +EGM
Sbjct: 131 --EKKKAKIGGEKFWWDEGIEGM 149

[Close]

BLAST of Cp4.1LG12g00790.1 vs. TAIR10
Match: AT5G60440.1 (AT5G60440.1 AGAMOUS-like 62)

HSP 1 Score: 124.0 bits (310), Expect = 8.0e-29
Identity = 67/142 (47.18%), Postives = 93/142 (65.49%), Query Frame = 1


Query: 13  MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFC 72
           +KK+ GRQKIE+ K++ +S+ QVTFSKRR+GLFKKA EL  LCGAEVAI+VFSP  KVF 
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 73  FGHPDVDVLLDRYLTGNLSPP--------KPAESYVPVAEFNRDFADLVLEFEAEKKRAE 132
           FGHP+VD ++DR++  N  PP        +       V + N     ++ + E EKK+ +
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 133 ELIQASEESRNSGGFWWEEAVE 147
           EL +  E+++  G  WWE+ VE
Sbjct: 122 ELKKIREKTKALGN-WWEDPVE 142

[Close]

BLAST of Cp4.1LG12g00790.1 vs. TAIR10
Match: AT2G24840.1 (AT2G24840.1 AGAMOUS-like 61)

HSP 1 Score: 119.0 bits (297), Expect = 2.6e-27
Identity = 68/143 (47.55%), Postives = 94/143 (65.73%), Query Frame = 1


Query: 14  KKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFCF 73
           K+++GRQKI + K++K+S +QVTFSKRRAGLFKKA EL  LCGAE+ IIVFSP  K F F
Sbjct: 59  KESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSF 118

Query: 74  GHPDVDVLLDRYLT-GNLSPPKPAE---SYVPVAEFNRDFADLVLEFEAEKKRAEELIQA 133
           GHP V+ +LDRY++  N+S  +  +   S     E N     ++ E E EKK+ + + + 
Sbjct: 119 GHPSVESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEM 178

Query: 134 SEES-RNSGGFWWEEAVEGMRVI 152
            +ES R S   WWE+ VE M ++
Sbjct: 179 RKESVRRSMINWWEKPVEEMNMV 201

[Close]

BLAST of Cp4.1LG12g00790.1 vs. TAIR10
Match: AT1G65360.1 (AT1G65360.1 AGAMOUS-like 23)

HSP 1 Score: 110.5 bits (275), Expect = 9.1e-25
Identity = 64/139 (46.04%), Postives = 91/139 (65.47%), Query Frame = 1


Query: 13  MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFC 72
           +KKTLGR+K+EI K+ K+S+ QVTFSKR+AGLFKKA E   LC A++A+IVFSP  KVF 
Sbjct: 2   VKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFS 61

Query: 73  FGHPDVDVLLDRY---LTGNLSPPKPAESY--VPVAEFNRDFADLVLEFEAEKKRAEELI 132
           FGHP+VDVLLD +   + G+ +     ESY  + V   N+ + ++  E E E+K  +   
Sbjct: 62  FGHPNVDVLLDHFRGCVVGH-NNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQKNKQSRA 121

Query: 133 QASEESRNSGGFWWEEAVE 147
           Q   E+ N+  +W +  +E
Sbjct: 122 QNERENENAEEWWSKSPLE 139

[Close]

BLAST of Cp4.1LG12g00790.1 vs. TAIR10
Match: AT1G01530.1 (AT1G01530.1 AGAMOUS-like 28)

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-21
Identity = 54/137 (39.42%), Postives = 85/137 (62.04%), Query Frame = 1


Query: 14  KKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFCF 73
           +K LGR+KIE+ K+  +S+ QVTFSKRR+GLFKK  EL  LC AE+AIIVFSP+ K + F
Sbjct: 3   RKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSF 62

Query: 74  GHPDVDVLLD----RYLTGNLSPPKPAESYVPVAEFNRDFADLVLEFEAEKKRAEELIQA 133
           GHP+V+ LLD    R +  N +    + + + +   N    +++ E E E++  + ++Q 
Sbjct: 63  GHPNVNKLLDHSLGRVIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIVQN 122

Query: 134 SEESRNSGGFWWEEAVE 147
             E++++  +W     E
Sbjct: 123 ERENKDAEKWWRNSPTE 139

[Close]

BLAST of Cp4.1LG12g00790.1 vs. TAIR10
Match: AT4G36590.1 (AT4G36590.1 MADS-box transcription factor family protein)

HSP 1 Score: 95.5 bits (236), Expect = 3.0e-20
Identity = 59/150 (39.33%), Postives = 85/150 (56.67%), Query Frame = 1


Query: 13  MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFC 72
           ++ T GRQKIE+KK+E +S+ QVTFSKRR GLFKKA EL  L GAE+ +IVFSP  KVF 
Sbjct: 2   VRSTKGRQKIEMKKMENESNLQVTFSKRRFGLFKKASELCTLSGAEILLIVFSPGGKVFS 61

Query: 73  FGHPDVDVLLDRYLTGN--------------LSPPKPAESYVPVAEFNRDFADLVLEFEA 132
           FGHP V  L+ R+   N              L   +P  +     ++  +    VL  + 
Sbjct: 62  FGHPSVQELIHRFSNPNHNSAIVHHQNNNLQLVETRPDRN----IQYLNNILTEVLANQE 121

Query: 133 EKKRAEELIQASEESRNSGGFWWEEAVEGM 149
           ++K+   ++   +ESR   G W+E+ V+ +
Sbjct: 122 KEKQKRMVLDLLKESREQVGNWYEKDVKDL 147

[Close]

BLAST of Cp4.1LG12g00790.1 vs. NCBI nr
Match: gi|659133060|ref|XP_008466532.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo])

HSP 1 Score: 260.0 bits (663), Expect = 2.6e-66
Identity = 128/141 (90.78%), Postives = 136/141 (96.45%), Query Frame = 1


Query: 10  SIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDK 69
           +IPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDK
Sbjct: 6   TIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDK 65

Query: 70  VFCFGHPDVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFADLVLEFEAEKKRAEELIQA 129
           VFCFGHPDVDVLLDRYLTGNLSPPKPAESY+PVAEFNRDFAD  LEFEAEKKRA ELI+A
Sbjct: 66  VFCFGHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADFALEFEAEKKRAAELIRA 125

Query: 130 SEESRNSGGFWWEEAVEGMRV 151
           +E+SR +GGFWW+EA EGMR+
Sbjct: 126 AEDSRKNGGFWWQEAAEGMRL 146

[Close]

BLAST of Cp4.1LG12g00790.1 vs. NCBI nr
Match: gi|700204855|gb|KGN59988.1| (hypothetical protein Csa_3G860240 [Cucumis sativus])

HSP 1 Score: 258.8 bits (660), Expect = 5.9e-66
Identity = 127/141 (90.07%), Postives = 137/141 (97.16%), Query Frame = 1


Query: 10  SIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDK 69
           +IPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDK
Sbjct: 6   TIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDK 65

Query: 70  VFCFGHPDVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFADLVLEFEAEKKRAEELIQA 129
           +FCFGHPDVDVLLDRYLTGNLSPPKPAESY+PVAEFNRDFAD  LEFEAEKKRA ELI+A
Sbjct: 66  LFCFGHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADCALEFEAEKKRAAELIRA 125

Query: 130 SEESRNSGGFWWEEAVEGMRV 151
           +E+SR +GGFWW+EAVEG+R+
Sbjct: 126 AEDSRKNGGFWWQEAVEGLRL 146

[Close]

BLAST of Cp4.1LG12g00790.1 vs. NCBI nr
Match: gi|778686644|ref|XP_004147877.2| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus])

HSP 1 Score: 253.8 bits (647), Expect = 1.9e-64
Identity = 125/138 (90.58%), Postives = 134/138 (97.10%), Query Frame = 1


Query: 13  MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFC 72
           MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDK+FC
Sbjct: 1   MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKLFC 60

Query: 73  FGHPDVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFADLVLEFEAEKKRAEELIQASEE 132
           FGHPDVDVLLDRYLTGNLSPPKPAESY+PVAEFNRDFAD  LEFEAEKKRA ELI+A+E+
Sbjct: 61  FGHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADCALEFEAEKKRAAELIRAAED 120

Query: 133 SRNSGGFWWEEAVEGMRV 151
           SR +GGFWW+EAVEG+R+
Sbjct: 121 SRKNGGFWWQEAVEGLRL 138

[Close]

BLAST of Cp4.1LG12g00790.1 vs. NCBI nr
Match: gi|659118116|ref|XP_008458954.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo])

HSP 1 Score: 177.6 bits (449), Expect = 1.7e-41
Identity = 88/139 (63.31%), Postives = 112/139 (80.58%), Query Frame = 1


Query: 13  MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFC 72
           MKK+LGR+KIEIKKL+KKS++QVTFSKRRAGLF KA ELS+LCGAE+A++VFS   K++ 
Sbjct: 1   MKKSLGRRKIEIKKLDKKSTQQVTFSKRRAGLFNKAAELSILCGAEIAVLVFSSRGKIYT 60

Query: 73  FGHPDVDVLLDRYLTGNLS-PPKPAESYVPVAEFNRDFADLVLEFEAEKKRAEELIQASE 132
           FGHP+VD LLDR+LTGN + PPKPAE+Y+P+AE NRD +    EFE EK+R      A+E
Sbjct: 61  FGHPNVDALLDRFLTGNNTVPPKPAEAYLPIAELNRDLSKAEAEFEIEKRR------AAE 120

Query: 133 ESRNSGGFWWEEAVEGMRV 151
            SRNS  FWW+E +E M++
Sbjct: 121 RSRNSERFWWDEPLESMKI 133

[Close]

BLAST of Cp4.1LG12g00790.1 vs. NCBI nr
Match: gi|449463992|ref|XP_004149713.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus])

HSP 1 Score: 175.6 bits (444), Expect = 6.6e-41
Identity = 86/138 (62.32%), Postives = 106/138 (76.81%), Query Frame = 1


Query: 13  MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFC 72
           MKK+LGRQKIEIKKL  KS +QVTFSKRRAGLF KA ELS+L GAE+AI+VFS  DK++ 
Sbjct: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60

Query: 73  FGHPDVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFADLVLEFEAEKKRAEELIQASEE 132
           FGHP+VD L+DR+LT N  PPKP E+Y+P+ E NRD  D+  EFE EK+RAE +      
Sbjct: 61  FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRRAERM------ 120

Query: 133 SRNSGGFWWEEAVEGMRV 151
            R +GGFWW+EA+E M +
Sbjct: 121 -RKTGGFWWDEAMECMGI 131

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g00790.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AGL62_ARATH	1.4e-27	47.18	Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1	[more]
AGL61_ARATH	4.6e-26	47.55	Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1	[more]
AGL23_ARATH	1.6e-23	46.04	Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana GN=AGL23 PE=2 SV=1	[more]
AGL28_ARATH	2.2e-20	39.42	Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana GN=AGL28 PE=2 SV=1	[more]
AGL29_ARATH	5.6e-16	37.04	Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana GN=AGL29 PE=2 SV=1	[more]

BLAST of Cp4.1LG12g00790.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LE01_CUCSA	4.1e-66	90.07	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G860240 PE=4 SV=1	[more]
A0A0A0LLS2_CUCSA	4.6e-41	62.32	Mads box protein OS=Cucumis sativus GN=Csa_2G277060 PE=4 SV=1	[more]
A0A0A0LW53_CUCSA	9.5e-39	60.87	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181400 PE=4 SV=1	[more]
A0A061FW87_THECC	2.5e-31	52.00	Mads box protein, putative OS=Theobroma cacao GN=TCM_012489 PE=4 SV=1	[more]
W9QWE0_9ROSA	1.2e-30	57.34	Agamous-like MADS-box protein AGL62 OS=Morus notabilis GN=L484_002950 PE=4 SV=1	[more]

BLAST of Cp4.1LG12g00790.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G60440.1	8.0e-29	47.18	AGAMOUS-like 62	[more]
AT2G24840.1	2.6e-27	47.55	AGAMOUS-like 61	[more]
AT1G65360.1	9.1e-25	46.04	AGAMOUS-like 23	[more]
AT1G01530.1	1.2e-21	39.42	AGAMOUS-like 28	[more]
AT4G36590.1	3.0e-20	39.33	MADS-box transcription factor family protein	[more]

BLAST of Cp4.1LG12g00790.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659133060\|ref\|XP_008466532.1\|	2.6e-66	90.78	PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo]	[more]
gi\|700204855\|gb\|KGN59988.1\|	5.9e-66	90.07	hypothetical protein Csa_3G860240 [Cucumis sativus]	[more]
gi\|778686644\|ref\|XP_004147877.2\|	1.9e-64	90.58	PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus]	[more]
gi\|659118116\|ref\|XP_008458954.1\|	1.7e-41	63.31	PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo]	[more]
gi\|449463992\|ref\|XP_004149713.1\|	6.6e-41	62.32	PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002100	TF_MADSbox

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG12g00790	Cp4.1LG12g00790	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG12g00790.1:cds:002	Cp4.1LG12g00790.1:cds:002	CDS
Cp4.1LG12g00790.1:cds:001	Cp4.1LG12g00790.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG12g00790.1	Cp4.1LG12g00790.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 39..54 score: 1.3E-21coord: 19..39 score: 1.3E-21coord: 54..75 score: 1.3
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 27..73 score: 4.2
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 17..76 score: 2.7
IPR002100	Transcription factor, MADS-box	PROSITE	PS00350	MADS_BOX_1	coord: 19..73 scor
IPR002100	Transcription factor, MADS-box	PROFILE	PS50066	MADS_BOX_2	coord: 17..77 score: 27
IPR002100	Transcription factor, MADS-box	unknown	SSF55455	SRF-like	coord: 18..87 score: 2.35
None	No IPR available	unknown	Coil	Coil	coord: 113..133 scor
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 18..148 score: 9.8
None	No IPR available	PANTHER	PTHR11945:SF164	SUBFAMILY NOT NAMED	coord: 18..148 score: 9.8