Cp4.1LG12g00790 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g00790
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionMADS-box transcription factor family protein
LocationCp4.1LG12 : 424186 .. 424910 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAACCAAAATTACAGAGAAAATCCATTCCGATGAAGAAAACTCTCGGCCGTCAAAAGATCGAAATCAAGAAGCTAGAGAAGAAGAGCAGCAAACAAGTGACGTTTTCGAAGCGCCGTGCCGGACTTTTCAAGAAGGCCGGCGAGCTTTCTGTGCTCTGCGGAGCAGAGGTTGCCATCATCGTCTTCTCTCCGAACGATAAGGTTTTTTGTTTCGGTCATCCGGATGTTGACGTGCTTTTGGATCGGTACCTGACCGGGAATTTGTCGCCGCCGAAGCCGGCGGAGAGTTACGTTCCTGTAGCGGAGTTTAATCGCGATTTCGCCGATTTAGTATTGGAGTTCGAAGCGGAGAAGAAGCGAGCGGAGGAATTGATTCAGGCGTCGGAGGAGTCGAGAAATAGCGGCGGATTTTGGTGGGAGGAGGCGGTGGAAGGGATGAGGTTAGAGGAATTGAAGGAGTTCCGATCGTCATTGATGGATTTGAGAGCTAAAGTGGCGGAGAAAGTCGAGAAATTGACAGCGGTTAGAATCGGAGGACCTCTGTTACCGGCGCTACCGCCACCGCCACCGCCGCAGCCGATGACGCCGCCGTCGTTTCACCTCGCCGGGAACCACCATGTCGCGACGGGATTAGGATTTTTCTAGATTTTTTGAGTTATTTTTCCCTACATTTTATTTTCCTATAAACTGTTTATAGAGTGATCTATTTTGGAAAGTAA

mRNA sequence

ATGGAGGAACCAAAATTACAGAGAAAATCCATTCCGATGAAGAAAACTCTCGGCCGTCAAAAGATCGAAATCAAGAAGCTAGAGAAGAAGAGCAGCAAACAAGTGACGTTTTCGAAGCGCCGTGCCGGACTTTTCAAGAAGGCCGGCGAGCTTTCTGTGCTCTGCGGAGCAGAGGTTGCCATCATCGTCTTCTCTCCGAACGATAAGGTTTTTTGTTTCGGTCATCCGGATGTTGACGTGCTTTTGGATCGGTACCTGACCGGGAATTTGTCGCCGCCGAAGCCGGCGGAGAGTTACGTTCCTGTAGCGGAGTTTAATCGCGATTTCGCCGATTTAGTATTGGAGTTCGAAGCGGAGAAGAAGCGAGCGGAGGAATTGATTCAGGCGTCGGAGGAGTCGAGAAATAGCGGCGGATTTTGGTGGGAGGAGGCGGTGGAAGGGATGAGAGTGATCTATTTTGGAAAGTAA

Coding sequence (CDS)

ATGGAGGAACCAAAATTACAGAGAAAATCCATTCCGATGAAGAAAACTCTCGGCCGTCAAAAGATCGAAATCAAGAAGCTAGAGAAGAAGAGCAGCAAACAAGTGACGTTTTCGAAGCGCCGTGCCGGACTTTTCAAGAAGGCCGGCGAGCTTTCTGTGCTCTGCGGAGCAGAGGTTGCCATCATCGTCTTCTCTCCGAACGATAAGGTTTTTTGTTTCGGTCATCCGGATGTTGACGTGCTTTTGGATCGGTACCTGACCGGGAATTTGTCGCCGCCGAAGCCGGCGGAGAGTTACGTTCCTGTAGCGGAGTTTAATCGCGATTTCGCCGATTTAGTATTGGAGTTCGAAGCGGAGAAGAAGCGAGCGGAGGAATTGATTCAGGCGTCGGAGGAGTCGAGAAATAGCGGCGGATTTTGGTGGGAGGAGGCGGTGGAAGGGATGAGAGTGATCTATTTTGGAAAGTAA

Protein sequence

MEEPKLQRKSIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFCFGHPDVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFADLVLEFEAEKKRAEELIQASEESRNSGGFWWEEAVEGMRVIYFGK
Homology
[Close]
BLAST of Cp4.1LG12g00790 vs. Swiss-Prot
Match: AGL62_ARATH (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.4e-27
Identity = 67/142 (47.18%), Postives = 93/142 (65.49%), Query Frame = 1 

Query: 13  MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFC 72
           +KK+ GRQKIE+ K++ +S+ QVTFSKRR+GLFKKA EL  LCGAEVAI+VFSP  KVF 
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 73  FGHPDVDVLLDRYLTGNLSPP--------KPAESYVPVAEFNRDFADLVLEFEAEKKRAE 132
           FGHP+VD ++DR++  N  PP        +       V + N     ++ + E EKK+ +
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 133 ELIQASEESRNSGGFWWEEAVE 147
           EL +  E+++  G  WWE+ VE
Sbjct: 122 ELKKIREKTKALGN-WWEDPVE 142

[Close]
BLAST of Cp4.1LG12g00790 vs. Swiss-Prot
Match: AGL61_ARATH (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 4.6e-26
Identity = 68/143 (47.55%), Postives = 94/143 (65.73%), Query Frame = 1 

Query: 14  KKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFCF 73
           K+++GRQKI + K++K+S +QVTFSKRRAGLFKKA EL  LCGAE+ IIVFSP  K F F
Sbjct: 59  KESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSF 118

Query: 74  GHPDVDVLLDRYLT-GNLSPPKPAE---SYVPVAEFNRDFADLVLEFEAEKKRAEELIQA 133
           GHP V+ +LDRY++  N+S  +  +   S     E N     ++ E E EKK+ + + + 
Sbjct: 119 GHPSVESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEM 178

Query: 134 SEES-RNSGGFWWEEAVEGMRVI 152
            +ES R S   WWE+ VE M ++
Sbjct: 179 RKESVRRSMINWWEKPVEEMNMV 201

[Close]
BLAST of Cp4.1LG12g00790 vs. Swiss-Prot
Match: AGL23_ARATH (Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana GN=AGL23 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.6e-23
Identity = 64/139 (46.04%), Postives = 91/139 (65.47%), Query Frame = 1 

Query: 13  MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFC 72
           +KKTLGR+K+EI K+ K+S+ QVTFSKR+AGLFKKA E   LC A++A+IVFSP  KVF 
Sbjct: 2   VKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFS 61

Query: 73  FGHPDVDVLLDRY---LTGNLSPPKPAESY--VPVAEFNRDFADLVLEFEAEKKRAEELI 132
           FGHP+VDVLLD +   + G+ +     ESY  + V   N+ + ++  E E E+K  +   
Sbjct: 62  FGHPNVDVLLDHFRGCVVGH-NNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQKNKQSRA 121

Query: 133 QASEESRNSGGFWWEEAVE 147
           Q   E+ N+  +W +  +E
Sbjct: 122 QNERENENAEEWWSKSPLE 139

[Close]
BLAST of Cp4.1LG12g00790 vs. Swiss-Prot
Match: AGL28_ARATH (Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana GN=AGL28 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.2e-20
Identity = 54/137 (39.42%), Postives = 85/137 (62.04%), Query Frame = 1 

Query: 14  KKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFCF 73
           +K LGR+KIE+ K+  +S+ QVTFSKRR+GLFKK  EL  LC AE+AIIVFSP+ K + F
Sbjct: 3   RKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSF 62

Query: 74  GHPDVDVLLD----RYLTGNLSPPKPAESYVPVAEFNRDFADLVLEFEAEKKRAEELIQA 133
           GHP+V+ LLD    R +  N +    + + + +   N    +++ E E E++  + ++Q 
Sbjct: 63  GHPNVNKLLDHSLGRVIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIVQN 122

Query: 134 SEESRNSGGFWWEEAVE 147
             E++++  +W     E
Sbjct: 123 ERENKDAEKWWRNSPTE 139

[Close]
BLAST of Cp4.1LG12g00790 vs. Swiss-Prot
Match: AGL29_ARATH (Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana GN=AGL29 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.6e-16
Identity = 50/135 (37.04%), Postives = 87/135 (64.44%), Query Frame = 1 

Query: 17  LGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFCFGHP 76
           +GR+KI+++ ++  +++QVTFSKRR GLFKKA EL+ LC AE+ I+VFSP  K F +G P
Sbjct: 1   MGRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKP 60

Query: 77  DVDVLLDRYL----TGNLSPPKPAESYVPVAEFNRDFADLV-LEFEAEKKRAEELIQASE 136
           ++D + +R++      +    + + +Y P  +   +  DL+  E EAEK+R E   ++ E
Sbjct: 61  NLDSVAERFMREYDDSDSGDEEKSGNYRPKLKRLSERLDLLNQEVEAEKERGE---KSQE 120

Query: 137 ESRNSGGFWWEEAVE 147
           +  ++G   ++E++E
Sbjct: 121 KLESAGDERFKESIE 132

[Close]
BLAST of Cp4.1LG12g00790 vs. TrEMBL
Match: A0A0A0LE01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G860240 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 4.1e-66
Identity = 127/141 (90.07%), Postives = 137/141 (97.16%), Query Frame = 1 

Query: 10  SIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDK 69
           +IPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDK
Sbjct: 6   TIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDK 65

Query: 70  VFCFGHPDVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFADLVLEFEAEKKRAEELIQA 129
           +FCFGHPDVDVLLDRYLTGNLSPPKPAESY+PVAEFNRDFAD  LEFEAEKKRA ELI+A
Sbjct: 66  LFCFGHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADCALEFEAEKKRAAELIRA 125

Query: 130 SEESRNSGGFWWEEAVEGMRV 151
           +E+SR +GGFWW+EAVEG+R+
Sbjct: 126 AEDSRKNGGFWWQEAVEGLRL 146

[Close]
BLAST of Cp4.1LG12g00790 vs. TrEMBL
Match: A0A0A0LLS2_CUCSA (Mads box protein OS=Cucumis sativus GN=Csa_2G277060 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 4.6e-41
Identity = 86/138 (62.32%), Postives = 106/138 (76.81%), Query Frame = 1 

Query: 13  MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFC 72
           MKK+LGRQKIEIKKL  KS +QVTFSKRRAGLF KA ELS+L GAE+AI+VFS  DK++ 
Sbjct: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60

Query: 73  FGHPDVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFADLVLEFEAEKKRAEELIQASEE 132
           FGHP+VD L+DR+LT N  PPKP E+Y+P+ E NRD  D+  EFE EK+RAE +      
Sbjct: 61  FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRRAERM------ 120

Query: 133 SRNSGGFWWEEAVEGMRV 151
            R +GGFWW+EA+E M +
Sbjct: 121 -RKTGGFWWDEAMECMGI 131

[Close]
BLAST of Cp4.1LG12g00790 vs. TrEMBL
Match: A0A0A0LW53_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181400 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 9.5e-39
Identity = 84/138 (60.87%), Postives = 105/138 (76.09%), Query Frame = 1 

Query: 13  MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFC 72
           MKK+ GR+KIEIK+L+K +++QVTFSKRR GLF KA ELS+LCGAE+AI++FS   KV+ 
Sbjct: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60

Query: 73  FGHPDVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFADLVLEFEAEKKRAEELIQASEE 132
           FGHP+VD LLDR+LTGN  PPKPAE+Y+P+ E N D      EFE EKKRA E +     
Sbjct: 61  FGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERL----- 120

Query: 133 SRNSGGFWWEEAVEGMRV 151
            RNS  FWW+EA+E MR+
Sbjct: 121 -RNSERFWWDEALERMRM 132

[Close]
BLAST of Cp4.1LG12g00790 vs. TrEMBL
Match: A0A061FW87_THECC (Mads box protein, putative OS=Theobroma cacao GN=TCM_012489 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.5e-31
Identity = 78/150 (52.00%), Postives = 104/150 (69.33%), Query Frame = 1 

Query: 9   KSIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPN- 68
           K  P  KT GRQ+IEIK+LEKKS+  VTFSKRR GLFKKA EL +L GA++ IIV SP+ 
Sbjct: 19  KKKPAGKTKGRQRIEIKQLEKKSNLHVTFSKRRKGLFKKASELCILSGAKIGIIVLSPSP 78

Query: 69  -DKVFCFGHPDVDVLLDRYLTGNLSPPKPAESYVPVA------EFNRDFADLVLEFEAEK 128
            +K FCFGHPD+D +LD+YL+GN  P    + Y  +       E ++ + + + E E EK
Sbjct: 79  REKPFCFGHPDIDTVLDQYLSGN--PAFDDQDYAALTDLPGFEEIDKQYEESLKELEKEK 138

Query: 129 KRAEELIQASEESRNSGGFWWEEAVEGMRV 151
           KR +E+ QA +   N+GGFWW+EA++GMRV
Sbjct: 139 KRGKEIEQA-KNVENNGGFWWDEAIDGMRV 165

[Close]
BLAST of Cp4.1LG12g00790 vs. TrEMBL
Match: W9QWE0_9ROSA (Agamous-like MADS-box protein AGL62 OS=Morus notabilis GN=L484_002950 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.2e-30
Identity = 82/143 (57.34%), Postives = 97/143 (67.83%), Query Frame = 1 

Query: 14  KKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFCF 73
           KKT GRQ+IEIKKLE  S+KQVTFSKRR+GLFKKA ELSVLCG+EVA +VFSPNDK+F F
Sbjct: 11  KKTQGRQRIEIKKLENGSNKQVTFSKRRSGLFKKAAELSVLCGSEVAALVFSPNDKLFAF 70

Query: 74  GHPDVDVLLDRYLTG-NLSPPKPAESYVPVA-----EFNRDFADLVLEFEAEKKRAEELI 133
           GHP VD ++ RY  G N +    A +   V      EFNRDF + V E EAEK R  E  
Sbjct: 71  GHPSVDSVVLRYAHGTNTAAAAAASTSTNVVTHVSEEFNRDFVEAVKELEAEKTRLAE-- 130

Query: 134 QASEESRNSGG--FWWEEAVEGM 149
              ++    GG  FWW+E +EGM
Sbjct: 131 --EKKKAKIGGEKFWWDEGIEGM 149

[Close]
BLAST of Cp4.1LG12g00790 vs. TAIR10
Match: AT5G60440.1 (AT5G60440.1 AGAMOUS-like 62)

HSP 1 Score: 124.0 bits (310), Expect = 8.0e-29
Identity = 67/142 (47.18%), Postives = 93/142 (65.49%), Query Frame = 1 

Query: 13  MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFC 72
           +KK+ GRQKIE+ K++ +S+ QVTFSKRR+GLFKKA EL  LCGAEVAI+VFSP  KVF 
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 73  FGHPDVDVLLDRYLTGNLSPP--------KPAESYVPVAEFNRDFADLVLEFEAEKKRAE 132
           FGHP+VD ++DR++  N  PP        +       V + N     ++ + E EKK+ +
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 133 ELIQASEESRNSGGFWWEEAVE 147
           EL +  E+++  G  WWE+ VE
Sbjct: 122 ELKKIREKTKALGN-WWEDPVE 142

[Close]
BLAST of Cp4.1LG12g00790 vs. TAIR10
Match: AT2G24840.1 (AT2G24840.1 AGAMOUS-like 61)

HSP 1 Score: 119.0 bits (297), Expect = 2.6e-27
Identity = 68/143 (47.55%), Postives = 94/143 (65.73%), Query Frame = 1 

Query: 14  KKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFCF 73
           K+++GRQKI + K++K+S +QVTFSKRRAGLFKKA EL  LCGAE+ IIVFSP  K F F
Sbjct: 59  KESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSF 118

Query: 74  GHPDVDVLLDRYLT-GNLSPPKPAE---SYVPVAEFNRDFADLVLEFEAEKKRAEELIQA 133
           GHP V+ +LDRY++  N+S  +  +   S     E N     ++ E E EKK+ + + + 
Sbjct: 119 GHPSVESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEM 178

Query: 134 SEES-RNSGGFWWEEAVEGMRVI 152
            +ES R S   WWE+ VE M ++
Sbjct: 179 RKESVRRSMINWWEKPVEEMNMV 201

[Close]
BLAST of Cp4.1LG12g00790 vs. TAIR10
Match: AT1G65360.1 (AT1G65360.1 AGAMOUS-like 23)

HSP 1 Score: 110.5 bits (275), Expect = 9.1e-25
Identity = 64/139 (46.04%), Postives = 91/139 (65.47%), Query Frame = 1 

Query: 13  MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFC 72
           +KKTLGR+K+EI K+ K+S+ QVTFSKR+AGLFKKA E   LC A++A+IVFSP  KVF 
Sbjct: 2   VKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFS 61

Query: 73  FGHPDVDVLLDRY---LTGNLSPPKPAESY--VPVAEFNRDFADLVLEFEAEKKRAEELI 132
           FGHP+VDVLLD +   + G+ +     ESY  + V   N+ + ++  E E E+K  +   
Sbjct: 62  FGHPNVDVLLDHFRGCVVGH-NNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQKNKQSRA 121

Query: 133 QASEESRNSGGFWWEEAVE 147
           Q   E+ N+  +W +  +E
Sbjct: 122 QNERENENAEEWWSKSPLE 139

[Close]
BLAST of Cp4.1LG12g00790 vs. TAIR10
Match: AT1G01530.1 (AT1G01530.1 AGAMOUS-like 28)

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-21
Identity = 54/137 (39.42%), Postives = 85/137 (62.04%), Query Frame = 1 

Query: 14  KKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFCF 73
           +K LGR+KIE+ K+  +S+ QVTFSKRR+GLFKK  EL  LC AE+AIIVFSP+ K + F
Sbjct: 3   RKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSF 62

Query: 74  GHPDVDVLLD----RYLTGNLSPPKPAESYVPVAEFNRDFADLVLEFEAEKKRAEELIQA 133
           GHP+V+ LLD    R +  N +    + + + +   N    +++ E E E++  + ++Q 
Sbjct: 63  GHPNVNKLLDHSLGRVIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIVQN 122

Query: 134 SEESRNSGGFWWEEAVE 147
             E++++  +W     E
Sbjct: 123 ERENKDAEKWWRNSPTE 139

[Close]
BLAST of Cp4.1LG12g00790 vs. TAIR10
Match: AT4G36590.1 (AT4G36590.1 MADS-box transcription factor family protein)

HSP 1 Score: 95.5 bits (236), Expect = 3.0e-20
Identity = 59/150 (39.33%), Postives = 85/150 (56.67%), Query Frame = 1 

Query: 13  MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFC 72
           ++ T GRQKIE+KK+E +S+ QVTFSKRR GLFKKA EL  L GAE+ +IVFSP  KVF 
Sbjct: 2   VRSTKGRQKIEMKKMENESNLQVTFSKRRFGLFKKASELCTLSGAEILLIVFSPGGKVFS 61

Query: 73  FGHPDVDVLLDRYLTGN--------------LSPPKPAESYVPVAEFNRDFADLVLEFEA 132
           FGHP V  L+ R+   N              L   +P  +     ++  +    VL  + 
Sbjct: 62  FGHPSVQELIHRFSNPNHNSAIVHHQNNNLQLVETRPDRN----IQYLNNILTEVLANQE 121

Query: 133 EKKRAEELIQASEESRNSGGFWWEEAVEGM 149
           ++K+   ++   +ESR   G W+E+ V+ +
Sbjct: 122 KEKQKRMVLDLLKESREQVGNWYEKDVKDL 147

[Close]
BLAST of Cp4.1LG12g00790 vs. NCBI nr
Match: gi|659133060|ref|XP_008466532.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo])

HSP 1 Score: 260.0 bits (663), Expect = 2.6e-66
Identity = 128/141 (90.78%), Postives = 136/141 (96.45%), Query Frame = 1 

Query: 10  SIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDK 69
           +IPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDK
Sbjct: 6   TIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDK 65

Query: 70  VFCFGHPDVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFADLVLEFEAEKKRAEELIQA 129
           VFCFGHPDVDVLLDRYLTGNLSPPKPAESY+PVAEFNRDFAD  LEFEAEKKRA ELI+A
Sbjct: 66  VFCFGHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADFALEFEAEKKRAAELIRA 125

Query: 130 SEESRNSGGFWWEEAVEGMRV 151
           +E+SR +GGFWW+EA EGMR+
Sbjct: 126 AEDSRKNGGFWWQEAAEGMRL 146

[Close]
BLAST of Cp4.1LG12g00790 vs. NCBI nr
Match: gi|700204855|gb|KGN59988.1| (hypothetical protein Csa_3G860240 [Cucumis sativus])

HSP 1 Score: 258.8 bits (660), Expect = 5.9e-66
Identity = 127/141 (90.07%), Postives = 137/141 (97.16%), Query Frame = 1 

Query: 10  SIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDK 69
           +IPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDK
Sbjct: 6   TIPMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDK 65

Query: 70  VFCFGHPDVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFADLVLEFEAEKKRAEELIQA 129
           +FCFGHPDVDVLLDRYLTGNLSPPKPAESY+PVAEFNRDFAD  LEFEAEKKRA ELI+A
Sbjct: 66  LFCFGHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADCALEFEAEKKRAAELIRA 125

Query: 130 SEESRNSGGFWWEEAVEGMRV 151
           +E+SR +GGFWW+EAVEG+R+
Sbjct: 126 AEDSRKNGGFWWQEAVEGLRL 146

[Close]
BLAST of Cp4.1LG12g00790 vs. NCBI nr
Match: gi|778686644|ref|XP_004147877.2| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus])

HSP 1 Score: 253.8 bits (647), Expect = 1.9e-64
Identity = 125/138 (90.58%), Postives = 134/138 (97.10%), Query Frame = 1 

Query: 13  MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFC 72
           MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDK+FC
Sbjct: 1   MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKLFC 60

Query: 73  FGHPDVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFADLVLEFEAEKKRAEELIQASEE 132
           FGHPDVDVLLDRYLTGNLSPPKPAESY+PVAEFNRDFAD  LEFEAEKKRA ELI+A+E+
Sbjct: 61  FGHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADCALEFEAEKKRAAELIRAAED 120

Query: 133 SRNSGGFWWEEAVEGMRV 151
           SR +GGFWW+EAVEG+R+
Sbjct: 121 SRKNGGFWWQEAVEGLRL 138

[Close]
BLAST of Cp4.1LG12g00790 vs. NCBI nr
Match: gi|659118116|ref|XP_008458954.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo])

HSP 1 Score: 177.6 bits (449), Expect = 1.7e-41
Identity = 88/139 (63.31%), Postives = 112/139 (80.58%), Query Frame = 1 

Query: 13  MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFC 72
           MKK+LGR+KIEIKKL+KKS++QVTFSKRRAGLF KA ELS+LCGAE+A++VFS   K++ 
Sbjct: 1   MKKSLGRRKIEIKKLDKKSTQQVTFSKRRAGLFNKAAELSILCGAEIAVLVFSSRGKIYT 60

Query: 73  FGHPDVDVLLDRYLTGNLS-PPKPAESYVPVAEFNRDFADLVLEFEAEKKRAEELIQASE 132
           FGHP+VD LLDR+LTGN + PPKPAE+Y+P+AE NRD +    EFE EK+R      A+E
Sbjct: 61  FGHPNVDALLDRFLTGNNTVPPKPAEAYLPIAELNRDLSKAEAEFEIEKRR------AAE 120

Query: 133 ESRNSGGFWWEEAVEGMRV 151
            SRNS  FWW+E +E M++
Sbjct: 121 RSRNSERFWWDEPLESMKI 133

[Close]
BLAST of Cp4.1LG12g00790 vs. NCBI nr
Match: gi|449463992|ref|XP_004149713.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus])

HSP 1 Score: 175.6 bits (444), Expect = 6.6e-41
Identity = 86/138 (62.32%), Postives = 106/138 (76.81%), Query Frame = 1 

Query: 13  MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFC 72
           MKK+LGRQKIEIKKL  KS +QVTFSKRRAGLF KA ELS+L GAE+AI+VFS  DK++ 
Sbjct: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60

Query: 73  FGHPDVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFADLVLEFEAEKKRAEELIQASEE 132
           FGHP+VD L+DR+LT N  PPKP E+Y+P+ E NRD  D+  EFE EK+RAE +      
Sbjct: 61  FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRRAERM------ 120

Query: 133 SRNSGGFWWEEAVEGMRV 151
            R +GGFWW+EA+E M +
Sbjct: 121 -RKTGGFWWDEAMECMGI 131

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g00790 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AGL62_ARATH1.4e-2747.18Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1[more]
AGL61_ARATH4.6e-2647.55Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1[more]
AGL23_ARATH1.6e-2346.04Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana GN=AGL23 PE=2 SV=1[more]
AGL28_ARATH2.2e-2039.42Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana GN=AGL28 PE=2 SV=1[more]
AGL29_ARATH5.6e-1637.04Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana GN=AGL29 PE=2 SV=1[more]
BLAST of Cp4.1LG12g00790 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LE01_CUCSA4.1e-6690.07Uncharacterized protein OS=Cucumis sativus GN=Csa_3G860240 PE=4 SV=1[more]
A0A0A0LLS2_CUCSA4.6e-4162.32Mads box protein OS=Cucumis sativus GN=Csa_2G277060 PE=4 SV=1[more]
A0A0A0LW53_CUCSA9.5e-3960.87Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181400 PE=4 SV=1[more]
A0A061FW87_THECC2.5e-3152.00Mads box protein, putative OS=Theobroma cacao GN=TCM_012489 PE=4 SV=1[more]
W9QWE0_9ROSA1.2e-3057.34Agamous-like MADS-box protein AGL62 OS=Morus notabilis GN=L484_002950 PE=4 SV=1[more]
BLAST of Cp4.1LG12g00790 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G60440.18.0e-2947.18 AGAMOUS-like 62[more]
AT2G24840.12.6e-2747.55 AGAMOUS-like 61[more]
AT1G65360.19.1e-2546.04 AGAMOUS-like 23[more]
AT1G01530.11.2e-2139.42 AGAMOUS-like 28[more]
AT4G36590.13.0e-2039.33 MADS-box transcription factor family protein[more]
BLAST of Cp4.1LG12g00790 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659133060|ref|XP_008466532.1|2.6e-6690.78PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo][more]
gi|700204855|gb|KGN59988.1|5.9e-6690.07hypothetical protein Csa_3G860240 [Cucumis sativus][more]
gi|778686644|ref|XP_004147877.2|1.9e-6490.58PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus][more]
gi|659118116|ref|XP_008458954.1|1.7e-4163.31PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo][more]
gi|449463992|ref|XP_004149713.1|6.6e-4162.32PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR002100TF_MADSbox
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g00790.1Cp4.1LG12g00790.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 39..54
score: 1.3E-21coord: 19..39
score: 1.3E-21coord: 54..75
score: 1.3
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 27..73
score: 4.2
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 17..76
score: 2.7
IPR002100Transcription factor, MADS-boxPROSITEPS00350MADS_BOX_1coord: 19..73
scor
IPR002100Transcription factor, MADS-boxPROFILEPS50066MADS_BOX_2coord: 17..77
score: 27
IPR002100Transcription factor, MADS-boxunknownSSF55455SRF-likecoord: 18..87
score: 2.35
NoneNo IPR availableunknownCoilCoilcoord: 113..133
scor
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 18..148
score: 9.8
NoneNo IPR availablePANTHERPTHR11945:SF164SUBFAMILY NOT NAMEDcoord: 18..148
score: 9.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g00790CmaCh17G000780Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g00790CmoCh17G000850Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g00790Cla010572Watermelon (97103) v1cpewmB161
Cp4.1LG12g00790Lsi09G011110Bottle gourd (USVL1VR-Ls)cpelsiB101
Cp4.1LG12g00790Bhi12G001264Wax gourdcpewgoB0176
Cp4.1LG12g00790Carg10161Silver-seed gourdcarcpeB0322
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g00790Cucurbita pepo (Zucchini)cpecpeB161
Cp4.1LG12g00790Cucurbita pepo (Zucchini)cpecpeB184
Cp4.1LG12g00790Cucurbita pepo (Zucchini)cpecpeB194
Cp4.1LG12g00790Cucumber (Gy14) v1cgycpeB0670
Cp4.1LG12g00790Cucumber (Gy14) v1cgycpeB0698
Cp4.1LG12g00790Cucurbita maxima (Rimu)cmacpeB259
Cp4.1LG12g00790Cucurbita maxima (Rimu)cmacpeB811
Cp4.1LG12g00790Cucurbita maxima (Rimu)cmacpeB895
Cp4.1LG12g00790Cucurbita maxima (Rimu)cmacpeB907
Cp4.1LG12g00790Cucurbita moschata (Rifu)cmocpeB223
Cp4.1LG12g00790Cucurbita moschata (Rifu)cmocpeB765
Cp4.1LG12g00790Cucurbita moschata (Rifu)cmocpeB833
Cp4.1LG12g00790Cucurbita moschata (Rifu)cmocpeB843
Cp4.1LG12g00790Wild cucumber (PI 183967)cpecpiB127
Cp4.1LG12g00790Wild cucumber (PI 183967)cpecpiB136
Cp4.1LG12g00790Cucumber (Chinese Long) v2cpecuB128
Cp4.1LG12g00790Cucumber (Chinese Long) v2cpecuB135
Cp4.1LG12g00790Bottle gourd (USVL1VR-Ls)cpelsiB122
Cp4.1LG12g00790Watermelon (Charleston Gray)cpewcgB138
Cp4.1LG12g00790Watermelon (Charleston Gray)cpewcgB144
Cp4.1LG12g00790Watermelon (97103) v1cpewmB151
Cp4.1LG12g00790Melon (DHL92) v3.5.1cpemeB135
Cp4.1LG12g00790Melon (DHL92) v3.5.1cpemeB141
Cp4.1LG12g00790Cucumber (Gy14) v2cgybcpeB175
Cp4.1LG12g00790Cucumber (Gy14) v2cgybcpeB176
Cp4.1LG12g00790Cucumber (Gy14) v2cgybcpeB304
Cp4.1LG12g00790Melon (DHL92) v3.6.1cpemedB162
Cp4.1LG12g00790Melon (DHL92) v3.6.1cpemedB170
Cp4.1LG12g00790Silver-seed gourdcarcpeB1328
Cp4.1LG12g00790Silver-seed gourdcarcpeB1498
Cp4.1LG12g00790Silver-seed gourdcarcpeB1501
Cp4.1LG12g00790Cucumber (Chinese Long) v3cpecucB0146
Cp4.1LG12g00790Cucumber (Chinese Long) v3cpecucB0153
Cp4.1LG12g00790Wax gourdcpewgoB0192