Cp4.1LG11g11870.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG11g11870.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Ultraviolet-B-repressible protein
Location	Cp4.1LG11 : 9710103 .. 9710471 (-)
Sequence length	369

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAACTTCCGCAGTTTCAATGGCTATGCCAATTACTAATGCGACCCAGAAGAGAGCAAGGAGCACCGACGCCTTCGCTAAGGCATTGCCTTTGAGGCCTTCCAACAAGCCAACCGCTTCATCAAACTCCAGAGCCAAGTTCCAAGTGCGGGCTTCTTTGAAGGAGAAGGCAGTTGCTGGACTCGCTGCTACTGCACTGACGGCCTCCATGGTGCTTCCTGAGGTGGCTGAAGCTGCTGGGCCTGGAGTTAGTCCCTCTCTAAAGAATTTCTTGCTCAGCATTGCCGCCGGTGGAGTAGTCGTCGCTGCTATCTTGGGTGCGATTATCGGCGTTTCCAATTTCGATCCGGTCAAGCGTACCTGA

mRNA sequence

ATGGCTTCAACTTCCGCAGTTTCAATGGCTATGCCAATTACTAATGCGACCCAGAAGAGAGCAAGGAGCACCGACGCCTTCGCTAAGGCATTGCCTTTGAGGCCTTCCAACAAGCCAACCGCTTCATCAAACTCCAGAGCCAAGTTCCAAGTGCGGGCTTCTTTGAAGGAGAAGGCAGTTGCTGGACTCGCTGCTACTGCACTGACGGCCTCCATGGTGCTTCCTGAGGTGGCTGAAGCTGCTGGGCCTGGAGTTAGTCCCTCTCTAAAGAATTTCTTGCTCAGCATTGCCGCCGGTGGAGTAGTCGTCGCTGCTATCTTGGGTGCGATTATCGGCGTTTCCAATTTCGATCCGGTCAAGCGTACCTGA

Coding sequence (CDS)

ATGGCTTCAACTTCCGCAGTTTCAATGGCTATGCCAATTACTAATGCGACCCAGAAGAGAGCAAGGAGCACCGACGCCTTCGCTAAGGCATTGCCTTTGAGGCCTTCCAACAAGCCAACCGCTTCATCAAACTCCAGAGCCAAGTTCCAAGTGCGGGCTTCTTTGAAGGAGAAGGCAGTTGCTGGACTCGCTGCTACTGCACTGACGGCCTCCATGGTGCTTCCTGAGGTGGCTGAAGCTGCTGGGCCTGGAGTTAGTCCCTCTCTAAAGAATTTCTTGCTCAGCATTGCCGCCGGTGGAGTAGTCGTCGCTGCTATCTTGGGTGCGATTATCGGCGTTTCCAATTTCGATCCGGTCAAGCGTACCTGA

Protein sequence

MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVKRT

Homology

[Close]

BLAST of Cp4.1LG11g11870.1 vs. TrEMBL
Match: A0A0A0LIL7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000260 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 2.4e-45
Identity = 108/122 (88.52%), Postives = 114/122 (93.44%), Query Frame = 1


Query: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSA+SMAMPITNA QKRAR  +AFAK LPLRPSNKP+ SS+S AKFQVRASLKEKAV
Sbjct: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60

Query: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
           AGLAATALTASMVLPEVAEAAG GVSPSLKNFLLSIAAGGVVV AILGA+IGV+NFDPVK
Sbjct: 61  AGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120

Query: 121 RT 123
           RT
Sbjct: 121 RT 122

[Close]

BLAST of Cp4.1LG11g11870.1 vs. TrEMBL
Match: B9RK19_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1045940 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 8.6e-35
Identity = 91/122 (74.59%), Postives = 104/122 (85.25%), Query Frame = 1


Query: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSAVSMAMPIT+A+QK+  S++AF K LPLR S K   +S S  KFQV+ASLKEKA+
Sbjct: 1   MASTSAVSMAMPITSASQKKVPSSEAFFKPLPLRQS-KAVMASKSNGKFQVKASLKEKAI 60

Query: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
            GL A ALTASMV+PEVAEAAG GVSPSLKNFLLSI AGGVV+ AI+GAIIGV+NFDPVK
Sbjct: 61  TGLTAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIVAGGVVLTAIVGAIIGVANFDPVK 120

Query: 121 RT 123
           R+
Sbjct: 121 RS 121

[Close]

BLAST of Cp4.1LG11g11870.1 vs. TrEMBL
Match: A9PIY2_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.8e-33
Identity = 85/122 (69.67%), Postives = 101/122 (82.79%), Query Frame = 1


Query: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSAVSMAMP+T+A++K A +++AF K LP+RPS    A+S     FQV+ASLKEK V
Sbjct: 1   MASTSAVSMAMPLTHASRKAAPTSEAFFKPLPVRPSKAIAAASRCNGGFQVKASLKEKVV 60

Query: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
            GL A ALT SMV+PEVAEAAGPGVSPSL NFLLSI AGGVV+AAI GA++GVSNFDPV+
Sbjct: 61  TGLTAGALTVSMVIPEVAEAAGPGVSPSLNNFLLSIVAGGVVLAAIAGAVVGVSNFDPVR 120

Query: 121 RT 123
           R+
Sbjct: 121 RS 122

[Close]

BLAST of Cp4.1LG11g11870.1 vs. TrEMBL
Match: U5FIS7_POPTR (Membrane family protein OS=Populus trichocarpa GN=POPTR_0018s07160g PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.8e-33
Identity = 84/122 (68.85%), Postives = 101/122 (82.79%), Query Frame = 1


Query: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSAVSMAMP+T+A++K A +++AF K LP+RPS    A+S    +FQV+ASLKEK V
Sbjct: 1   MASTSAVSMAMPLTHASRKAAPTSEAFFKPLPVRPSKAIAAASRCNGRFQVKASLKEKVV 60

Query: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
            GL A ALT SMV+PEVAEAAGPGVSPSL NFLLSI AGGVV+ AI GA++GVSNFDPV+
Sbjct: 61  TGLTAGALTVSMVIPEVAEAAGPGVSPSLNNFLLSIVAGGVVLVAIAGAVVGVSNFDPVR 120

Query: 121 RT 123
           R+
Sbjct: 121 RS 122

[Close]

BLAST of Cp4.1LG11g11870.1 vs. TrEMBL
Match: W9QSC1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027353 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.7e-33
Identity = 83/122 (68.03%), Postives = 102/122 (83.61%), Query Frame = 1


Query: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MA+TSAVSMAMP+T+A+QK+A +++AF + LP+R S   T +  S  K +VRAS+KEK V
Sbjct: 1   MAATSAVSMAMPLTSASQKKAPNSEAFLRPLPVRTSKAVTVAPRSTGKLEVRASMKEKVV 60

Query: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
            GL A A+TASMV+P+VAEAAGPGVSPSLKNFLLSI AGGVV AAI+G +IGVSNFDPVK
Sbjct: 61  TGLTAGAMTASMVIPQVAEAAGPGVSPSLKNFLLSIVAGGVVFAAIVGVVIGVSNFDPVK 120

Query: 121 RT 123
           R+
Sbjct: 121 RS 122

[Close]

BLAST of Cp4.1LG11g11870.1 vs. TAIR10
Match: AT2G06520.1 (AT2G06520.1 photosystem II subunit X)

HSP 1 Score: 115.9 bits (289), Expect = 1.7e-26
Identity = 68/122 (55.74%), Postives = 90/122 (73.77%), Query Frame = 1


Query: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSA+S+  P+ N T+     +  F K LPL+PS    A+     + QV+A   +KA+
Sbjct: 1   MASTSAMSLVTPL-NQTR-----SSPFLKPLPLKPSKALVATGGRAQRLQVKALKMDKAL 60

Query: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
            G++A ALTASMV+PE+AEAAG G+SPSLKNFLLSIA+GG+V+  I+G ++GVSNFDPVK
Sbjct: 61  TGISAAALTASMVIPEIAEAAGSGISPSLKNFLLSIASGGLVLTVIIGVVVGVSNFDPVK 116

Query: 121 RT 123
           RT
Sbjct: 121 RT 116

[Close]

BLAST of Cp4.1LG11g11870.1 vs. NCBI nr
Match: gi|778665565|ref|XP_011648590.1| (PREDICTED: uncharacterized protein LOC105434533 [Cucumis sativus])

HSP 1 Score: 189.5 bits (480), Expect = 3.5e-45
Identity = 108/122 (88.52%), Postives = 114/122 (93.44%), Query Frame = 1


Query: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSA+SMAMPITNA QKRAR  +AFAK LPLRPSNKP+ SS+S AKFQVRASLKEKAV
Sbjct: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60

Query: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
           AGLAATALTASMVLPEVAEAAG GVSPSLKNFLLSIAAGGVVV AILGA+IGV+NFDPVK
Sbjct: 61  AGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120

Query: 121 RT 123
           RT
Sbjct: 121 RT 122

[Close]

BLAST of Cp4.1LG11g11870.1 vs. NCBI nr
Match: gi|659071401|ref|XP_008459641.1| (PREDICTED: uncharacterized protein LOC103498700 [Cucumis melo])

HSP 1 Score: 189.1 bits (479), Expect = 4.5e-45
Identity = 107/122 (87.70%), Postives = 113/122 (92.62%), Query Frame = 1


Query: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSA+SM MPITNA QKR R  +AFAK LPLRPSNKP+ SS+S AKFQVRASLKEKAV
Sbjct: 1   MASTSAISMPMPITNAAQKRTRRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60

Query: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
           AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVV AILGA+IGV+NFDPVK
Sbjct: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120

Query: 121 RT 123
           RT
Sbjct: 121 RT 122

[Close]

BLAST of Cp4.1LG11g11870.1 vs. NCBI nr
Match: gi|255546007|ref|XP_002514063.1| (PREDICTED: uncharacterized protein LOC8268448 [Ricinus communis])

HSP 1 Score: 154.5 bits (389), Expect = 1.2e-34
Identity = 91/122 (74.59%), Postives = 104/122 (85.25%), Query Frame = 1


Query: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSAVSMAMPIT+A+QK+  S++AF K LPLR S K   +S S  KFQV+ASLKEKA+
Sbjct: 1   MASTSAVSMAMPITSASQKKVPSSEAFFKPLPLRQS-KAVMASKSNGKFQVKASLKEKAI 60

Query: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
            GL A ALTASMV+PEVAEAAG GVSPSLKNFLLSI AGGVV+ AI+GAIIGV+NFDPVK
Sbjct: 61  TGLTAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIVAGGVVLTAIVGAIIGVANFDPVK 120

Query: 121 RT 123
           R+
Sbjct: 121 RS 121

[Close]

BLAST of Cp4.1LG11g11870.1 vs. NCBI nr
Match: gi|1009143348|ref|XP_015889216.1| (PREDICTED: mechanosensitive ion channel protein 10-like [Ziziphus jujuba])

HSP 1 Score: 153.3 bits (386), Expect = 2.7e-34
Identity = 87/122 (71.31%), Postives = 101/122 (82.79%), Query Frame = 1


Query: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MA+TSAVSMAMP+TNATQ+R  S++AF K LP++PS     S +S  + QVRASLKEKAV
Sbjct: 802 MATTSAVSMAMPLTNATQRRVPSSEAFLKPLPVKPSKALAVSKSSSGRLQVRASLKEKAV 861

Query: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
            GL A ALTASMV+P+VAEAA  GV+PSLKNFLLSI AGGVV  AI+GA+IGVSNFDPVK
Sbjct: 862 TGLTAAALTASMVIPQVAEAADSGVTPSLKNFLLSIVAGGVVAVAIVGAVIGVSNFDPVK 921

Query: 121 RT 123
           RT
Sbjct: 922 RT 923

[Close]

BLAST of Cp4.1LG11g11870.1 vs. NCBI nr
Match: gi|118489056|gb|ABK96335.1| (unknown [Populus trichocarpa x Populus deltoides])

HSP 1 Score: 149.4 bits (376), Expect = 4.0e-33
Identity = 85/122 (69.67%), Postives = 101/122 (82.79%), Query Frame = 1


Query: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSAVSMAMP+T+A++K A +++AF K LP+RPS    A+S     FQV+ASLKEK V
Sbjct: 1   MASTSAVSMAMPLTHASRKAAPTSEAFFKPLPVRPSKAIAAASRCNGGFQVKASLKEKVV 60

Query: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
            GL A ALT SMV+PEVAEAAGPGVSPSL NFLLSI AGGVV+AAI GA++GVSNFDPV+
Sbjct: 61  TGLTAGALTVSMVIPEVAEAAGPGVSPSLNNFLLSIVAGGVVLAAIAGAVVGVSNFDPVR 120

Query: 121 RT 123
           R+
Sbjct: 121 RS 122

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g11870.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g11870.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIL7_CUCSA	2.4e-45	88.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000260 PE=4 SV=1	[more]
B9RK19_RICCO	8.6e-35	74.59	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1045940 PE=4 SV=1	[more]
A9PIY2_9ROSI	2.8e-33	69.67	Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2...	[more]
U5FIS7_POPTR	2.8e-33	68.85	Membrane family protein OS=Populus trichocarpa GN=POPTR_0018s07160g PE=4 SV=1	[more]
W9QSC1_9ROSA	4.7e-33	68.03	Uncharacterized protein OS=Morus notabilis GN=L484_027353 PE=4 SV=1	[more]

BLAST of Cp4.1LG11g11870.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G06520.1	1.7e-26	55.74	photosystem II subunit X	[more]

BLAST of Cp4.1LG11g11870.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778665565\|ref\|XP_011648590.1\|	3.5e-45	88.52	PREDICTED: uncharacterized protein LOC105434533 [Cucumis sativus]	[more]
gi\|659071401\|ref\|XP_008459641.1\|	4.5e-45	87.70	PREDICTED: uncharacterized protein LOC103498700 [Cucumis melo]	[more]
gi\|255546007\|ref\|XP_002514063.1\|	1.2e-34	74.59	PREDICTED: uncharacterized protein LOC8268448 [Ricinus communis]	[more]
gi\|1009143348\|ref\|XP_015889216.1\|	2.7e-34	71.31	PREDICTED: mechanosensitive ion channel protein 10-like [Ziziphus jujuba]	[more]
gi\|118489056\|gb\|ABK96335.1\|	4.0e-33	69.67	unknown [Populus trichocarpa x Populus deltoides]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG11g11870	Cp4.1LG11g11870	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG11g11870.1:cds:001	Cp4.1LG11g11870.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG11g11870.1	Cp4.1LG11g11870.1-protein	polypeptide