Cp4.1LG11g11870 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG11g11870
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUltraviolet-B-repressible protein
LocationCp4.1LG11 : 9710103 .. 9710471 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCAACTTCCGCAGTTTCAATGGCTATGCCAATTACTAATGCGACCCAGAAGAGAGCAAGGAGCACCGACGCCTTCGCTAAGGCATTGCCTTTGAGGCCTTCCAACAAGCCAACCGCTTCATCAAACTCCAGAGCCAAGTTCCAAGTGCGGGCTTCTTTGAAGGAGAAGGCAGTTGCTGGACTCGCTGCTACTGCACTGACGGCCTCCATGGTGCTTCCTGAGGTGGCTGAAGCTGCTGGGCCTGGAGTTAGTCCCTCTCTAAAGAATTTCTTGCTCAGCATTGCCGCCGGTGGAGTAGTCGTCGCTGCTATCTTGGGTGCGATTATCGGCGTTTCCAATTTCGATCCGGTCAAGCGTACCTGA

mRNA sequence

ATGGCTTCAACTTCCGCAGTTTCAATGGCTATGCCAATTACTAATGCGACCCAGAAGAGAGCAAGGAGCACCGACGCCTTCGCTAAGGCATTGCCTTTGAGGCCTTCCAACAAGCCAACCGCTTCATCAAACTCCAGAGCCAAGTTCCAAGTGCGGGCTTCTTTGAAGGAGAAGGCAGTTGCTGGACTCGCTGCTACTGCACTGACGGCCTCCATGGTGCTTCCTGAGGTGGCTGAAGCTGCTGGGCCTGGAGTTAGTCCCTCTCTAAAGAATTTCTTGCTCAGCATTGCCGCCGGTGGAGTAGTCGTCGCTGCTATCTTGGGTGCGATTATCGGCGTTTCCAATTTCGATCCGGTCAAGCGTACCTGA

Coding sequence (CDS)

ATGGCTTCAACTTCCGCAGTTTCAATGGCTATGCCAATTACTAATGCGACCCAGAAGAGAGCAAGGAGCACCGACGCCTTCGCTAAGGCATTGCCTTTGAGGCCTTCCAACAAGCCAACCGCTTCATCAAACTCCAGAGCCAAGTTCCAAGTGCGGGCTTCTTTGAAGGAGAAGGCAGTTGCTGGACTCGCTGCTACTGCACTGACGGCCTCCATGGTGCTTCCTGAGGTGGCTGAAGCTGCTGGGCCTGGAGTTAGTCCCTCTCTAAAGAATTTCTTGCTCAGCATTGCCGCCGGTGGAGTAGTCGTCGCTGCTATCTTGGGTGCGATTATCGGCGTTTCCAATTTCGATCCGGTCAAGCGTACCTGA

Protein sequence

MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVKRT
BLAST of Cp4.1LG11g11870 vs. TrEMBL
Match: A0A0A0LIL7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000260 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 2.4e-45
Identity = 108/122 (88.52%), Postives = 114/122 (93.44%), Query Frame = 1

Query: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSA+SMAMPITNA QKRAR  +AFAK LPLRPSNKP+ SS+S AKFQVRASLKEKAV
Sbjct: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60

Query: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
           AGLAATALTASMVLPEVAEAAG GVSPSLKNFLLSIAAGGVVV AILGA+IGV+NFDPVK
Sbjct: 61  AGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120

Query: 121 RT 123
           RT
Sbjct: 121 RT 122

BLAST of Cp4.1LG11g11870 vs. TrEMBL
Match: B9RK19_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1045940 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 8.6e-35
Identity = 91/122 (74.59%), Postives = 104/122 (85.25%), Query Frame = 1

Query: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSAVSMAMPIT+A+QK+  S++AF K LPLR S K   +S S  KFQV+ASLKEKA+
Sbjct: 1   MASTSAVSMAMPITSASQKKVPSSEAFFKPLPLRQS-KAVMASKSNGKFQVKASLKEKAI 60

Query: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
            GL A ALTASMV+PEVAEAAG GVSPSLKNFLLSI AGGVV+ AI+GAIIGV+NFDPVK
Sbjct: 61  TGLTAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIVAGGVVLTAIVGAIIGVANFDPVK 120

Query: 121 RT 123
           R+
Sbjct: 121 RS 121

BLAST of Cp4.1LG11g11870 vs. TrEMBL
Match: A9PIY2_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.8e-33
Identity = 85/122 (69.67%), Postives = 101/122 (82.79%), Query Frame = 1

Query: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSAVSMAMP+T+A++K A +++AF K LP+RPS    A+S     FQV+ASLKEK V
Sbjct: 1   MASTSAVSMAMPLTHASRKAAPTSEAFFKPLPVRPSKAIAAASRCNGGFQVKASLKEKVV 60

Query: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
            GL A ALT SMV+PEVAEAAGPGVSPSL NFLLSI AGGVV+AAI GA++GVSNFDPV+
Sbjct: 61  TGLTAGALTVSMVIPEVAEAAGPGVSPSLNNFLLSIVAGGVVLAAIAGAVVGVSNFDPVR 120

Query: 121 RT 123
           R+
Sbjct: 121 RS 122

BLAST of Cp4.1LG11g11870 vs. TrEMBL
Match: U5FIS7_POPTR (Membrane family protein OS=Populus trichocarpa GN=POPTR_0018s07160g PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.8e-33
Identity = 84/122 (68.85%), Postives = 101/122 (82.79%), Query Frame = 1

Query: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSAVSMAMP+T+A++K A +++AF K LP+RPS    A+S    +FQV+ASLKEK V
Sbjct: 1   MASTSAVSMAMPLTHASRKAAPTSEAFFKPLPVRPSKAIAAASRCNGRFQVKASLKEKVV 60

Query: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
            GL A ALT SMV+PEVAEAAGPGVSPSL NFLLSI AGGVV+ AI GA++GVSNFDPV+
Sbjct: 61  TGLTAGALTVSMVIPEVAEAAGPGVSPSLNNFLLSIVAGGVVLVAIAGAVVGVSNFDPVR 120

Query: 121 RT 123
           R+
Sbjct: 121 RS 122

BLAST of Cp4.1LG11g11870 vs. TrEMBL
Match: W9QSC1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027353 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.7e-33
Identity = 83/122 (68.03%), Postives = 102/122 (83.61%), Query Frame = 1

Query: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MA+TSAVSMAMP+T+A+QK+A +++AF + LP+R S   T +  S  K +VRAS+KEK V
Sbjct: 1   MAATSAVSMAMPLTSASQKKAPNSEAFLRPLPVRTSKAVTVAPRSTGKLEVRASMKEKVV 60

Query: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
            GL A A+TASMV+P+VAEAAGPGVSPSLKNFLLSI AGGVV AAI+G +IGVSNFDPVK
Sbjct: 61  TGLTAGAMTASMVIPQVAEAAGPGVSPSLKNFLLSIVAGGVVFAAIVGVVIGVSNFDPVK 120

Query: 121 RT 123
           R+
Sbjct: 121 RS 122

BLAST of Cp4.1LG11g11870 vs. TAIR10
Match: AT2G06520.1 (AT2G06520.1 photosystem II subunit X)

HSP 1 Score: 115.9 bits (289), Expect = 1.7e-26
Identity = 68/122 (55.74%), Postives = 90/122 (73.77%), Query Frame = 1

Query: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSA+S+  P+ N T+     +  F K LPL+PS    A+     + QV+A   +KA+
Sbjct: 1   MASTSAMSLVTPL-NQTR-----SSPFLKPLPLKPSKALVATGGRAQRLQVKALKMDKAL 60

Query: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
            G++A ALTASMV+PE+AEAAG G+SPSLKNFLLSIA+GG+V+  I+G ++GVSNFDPVK
Sbjct: 61  TGISAAALTASMVIPEIAEAAGSGISPSLKNFLLSIASGGLVLTVIIGVVVGVSNFDPVK 116

Query: 121 RT 123
           RT
Sbjct: 121 RT 116

BLAST of Cp4.1LG11g11870 vs. NCBI nr
Match: gi|778665565|ref|XP_011648590.1| (PREDICTED: uncharacterized protein LOC105434533 [Cucumis sativus])

HSP 1 Score: 189.5 bits (480), Expect = 3.5e-45
Identity = 108/122 (88.52%), Postives = 114/122 (93.44%), Query Frame = 1

Query: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSA+SMAMPITNA QKRAR  +AFAK LPLRPSNKP+ SS+S AKFQVRASLKEKAV
Sbjct: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60

Query: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
           AGLAATALTASMVLPEVAEAAG GVSPSLKNFLLSIAAGGVVV AILGA+IGV+NFDPVK
Sbjct: 61  AGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120

Query: 121 RT 123
           RT
Sbjct: 121 RT 122

BLAST of Cp4.1LG11g11870 vs. NCBI nr
Match: gi|659071401|ref|XP_008459641.1| (PREDICTED: uncharacterized protein LOC103498700 [Cucumis melo])

HSP 1 Score: 189.1 bits (479), Expect = 4.5e-45
Identity = 107/122 (87.70%), Postives = 113/122 (92.62%), Query Frame = 1

Query: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSA+SM MPITNA QKR R  +AFAK LPLRPSNKP+ SS+S AKFQVRASLKEKAV
Sbjct: 1   MASTSAISMPMPITNAAQKRTRRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60

Query: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
           AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVV AILGA+IGV+NFDPVK
Sbjct: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120

Query: 121 RT 123
           RT
Sbjct: 121 RT 122

BLAST of Cp4.1LG11g11870 vs. NCBI nr
Match: gi|255546007|ref|XP_002514063.1| (PREDICTED: uncharacterized protein LOC8268448 [Ricinus communis])

HSP 1 Score: 154.5 bits (389), Expect = 1.2e-34
Identity = 91/122 (74.59%), Postives = 104/122 (85.25%), Query Frame = 1

Query: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSAVSMAMPIT+A+QK+  S++AF K LPLR S K   +S S  KFQV+ASLKEKA+
Sbjct: 1   MASTSAVSMAMPITSASQKKVPSSEAFFKPLPLRQS-KAVMASKSNGKFQVKASLKEKAI 60

Query: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
            GL A ALTASMV+PEVAEAAG GVSPSLKNFLLSI AGGVV+ AI+GAIIGV+NFDPVK
Sbjct: 61  TGLTAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIVAGGVVLTAIVGAIIGVANFDPVK 120

Query: 121 RT 123
           R+
Sbjct: 121 RS 121

BLAST of Cp4.1LG11g11870 vs. NCBI nr
Match: gi|1009143348|ref|XP_015889216.1| (PREDICTED: mechanosensitive ion channel protein 10-like [Ziziphus jujuba])

HSP 1 Score: 153.3 bits (386), Expect = 2.7e-34
Identity = 87/122 (71.31%), Postives = 101/122 (82.79%), Query Frame = 1

Query: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MA+TSAVSMAMP+TNATQ+R  S++AF K LP++PS     S +S  + QVRASLKEKAV
Sbjct: 802 MATTSAVSMAMPLTNATQRRVPSSEAFLKPLPVKPSKALAVSKSSSGRLQVRASLKEKAV 861

Query: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
            GL A ALTASMV+P+VAEAA  GV+PSLKNFLLSI AGGVV  AI+GA+IGVSNFDPVK
Sbjct: 862 TGLTAAALTASMVIPQVAEAADSGVTPSLKNFLLSIVAGGVVAVAIVGAVIGVSNFDPVK 921

Query: 121 RT 123
           RT
Sbjct: 922 RT 923

BLAST of Cp4.1LG11g11870 vs. NCBI nr
Match: gi|118489056|gb|ABK96335.1| (unknown [Populus trichocarpa x Populus deltoides])

HSP 1 Score: 149.4 bits (376), Expect = 4.0e-33
Identity = 85/122 (69.67%), Postives = 101/122 (82.79%), Query Frame = 1

Query: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSAVSMAMP+T+A++K A +++AF K LP+RPS    A+S     FQV+ASLKEK V
Sbjct: 1   MASTSAVSMAMPLTHASRKAAPTSEAFFKPLPVRPSKAIAAASRCNGGFQVKASLKEKVV 60

Query: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
            GL A ALT SMV+PEVAEAAGPGVSPSL NFLLSI AGGVV+AAI GA++GVSNFDPV+
Sbjct: 61  TGLTAGALTVSMVIPEVAEAAGPGVSPSLNNFLLSIVAGGVVLAAIAGAVVGVSNFDPVR 120

Query: 121 RT 123
           R+
Sbjct: 121 RS 122

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LIL7_CUCSA2.4e-4588.52Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000260 PE=4 SV=1[more]
B9RK19_RICCO8.6e-3574.59Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1045940 PE=4 SV=1[more]
A9PIY2_9ROSI2.8e-3369.67Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2... [more]
U5FIS7_POPTR2.8e-3368.85Membrane family protein OS=Populus trichocarpa GN=POPTR_0018s07160g PE=4 SV=1[more]
W9QSC1_9ROSA4.7e-3368.03Uncharacterized protein OS=Morus notabilis GN=L484_027353 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G06520.11.7e-2655.74 photosystem II subunit X[more]
Match NameE-valueIdentityDescription
gi|778665565|ref|XP_011648590.1|3.5e-4588.52PREDICTED: uncharacterized protein LOC105434533 [Cucumis sativus][more]
gi|659071401|ref|XP_008459641.1|4.5e-4587.70PREDICTED: uncharacterized protein LOC103498700 [Cucumis melo][more]
gi|255546007|ref|XP_002514063.1|1.2e-3474.59PREDICTED: uncharacterized protein LOC8268448 [Ricinus communis][more]
gi|1009143348|ref|XP_015889216.1|2.7e-3471.31PREDICTED: mechanosensitive ion channel protein 10-like [Ziziphus jujuba][more]
gi|118489056|gb|ABK96335.1|4.0e-3369.67unknown [Populus trichocarpa x Populus deltoides][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009523 photosystem II
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g11870.1Cp4.1LG11g11870.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG11g11870Silver-seed gourdcarcpeB0135
Cp4.1LG11g11870Silver-seed gourdcarcpeB0809
Cp4.1LG11g11870Silver-seed gourdcarcpeB1244
Cp4.1LG11g11870Cucumber (Chinese Long) v3cpecucB0112
Cp4.1LG11g11870Cucumber (Chinese Long) v3cpecucB0114
Cp4.1LG11g11870Wax gourdcpewgoB0123
Cp4.1LG11g11870Wax gourdcpewgoB0120
Cp4.1LG11g11870Wax gourdcpewgoB0121
Cp4.1LG11g11870Wax gourdcpewgoB0168
Cp4.1LG11g11870Cucurbita pepo (Zucchini)cpecpeB113
Cp4.1LG11g11870Cucurbita pepo (Zucchini)cpecpeB122
Cp4.1LG11g11870Cucurbita pepo (Zucchini)cpecpeB128
Cp4.1LG11g11870Cucurbita pepo (Zucchini)cpecpeB132
Cp4.1LG11g11870Cucurbita pepo (Zucchini)cpecpeB140
Cp4.1LG11g11870Cucumber (Gy14) v1cgycpeB0273
Cp4.1LG11g11870Cucurbita maxima (Rimu)cmacpeB075
Cp4.1LG11g11870Cucurbita maxima (Rimu)cmacpeB107
Cp4.1LG11g11870Cucurbita maxima (Rimu)cmacpeB171
Cp4.1LG11g11870Cucurbita maxima (Rimu)cmacpeB178
Cp4.1LG11g11870Cucurbita maxima (Rimu)cmacpeB767
Cp4.1LG11g11870Cucurbita moschata (Rifu)cmocpeB048
Cp4.1LG11g11870Cucurbita moschata (Rifu)cmocpeB084
Cp4.1LG11g11870Cucurbita moschata (Rifu)cmocpeB147
Cp4.1LG11g11870Cucurbita moschata (Rifu)cmocpeB424
Cp4.1LG11g11870Cucurbita moschata (Rifu)cmocpeB721
Cp4.1LG11g11870Wild cucumber (PI 183967)cpecpiB099
Cp4.1LG11g11870Wild cucumber (PI 183967)cpecpiB100
Cp4.1LG11g11870Cucumber (Chinese Long) v2cpecuB102
Cp4.1LG11g11870Cucumber (Chinese Long) v2cpecuB103
Cp4.1LG11g11870Bottle gourd (USVL1VR-Ls)cpelsiB072
Cp4.1LG11g11870Bottle gourd (USVL1VR-Ls)cpelsiB074
Cp4.1LG11g11870Bottle gourd (USVL1VR-Ls)cpelsiB093
Cp4.1LG11g11870Watermelon (Charleston Gray)cpewcgB094
Cp4.1LG11g11870Watermelon (Charleston Gray)cpewcgB097
Cp4.1LG11g11870Watermelon (Charleston Gray)cpewcgB107
Cp4.1LG11g11870Watermelon (97103) v1cpewmB102
Cp4.1LG11g11870Watermelon (97103) v1cpewmB116
Cp4.1LG11g11870Watermelon (97103) v1cpewmB124
Cp4.1LG11g11870Melon (DHL92) v3.5.1cpemeB099
Cp4.1LG11g11870Cucumber (Gy14) v2cgybcpeB168
Cp4.1LG11g11870Melon (DHL92) v3.6.1cpemedB126
Cp4.1LG11g11870Melon (DHL92) v3.6.1cpemedB123