Cp4.1LG11g02470.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG11g02470.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Cell growth defect factor 2
Location	Cp4.1LG11 : 1309379 .. 1311285 (+)
Sequence length	434

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CACGAAGCTGAATCTCAAAACTTAGGACTAAGCCGGTTGGCATCCCGACCGCGATCAGTCCAAGCCGGGTTCGCCACGTATGGAGGTTTTCGTCTTCTTGCCTACCGCACAACTCAGAGAGGAGAATTTTGAACCCTGCAATGGAAGGGAGAAAGGGGAAGAAGGGTTACATGTGGGCAATTTCAGCTGGTCTCAACGCTGCGTTCGCCGCCATTGCCGCCAAGCTTTTCTCCTCTACGGTAATCTTTCTCCATTTCTTTCCCGTACGAATCGTTTCACGATGATGCGATGATTTGCCCTAATTTGTATGAACCAACACAATCACGAGCTGCTTTTGTCAATTGTCTGAAGTTTTTCATCATTCTCGTTCTAATCATATTGCAATCGCATCTGCTCATATAATATCGACGTTGCAAATTGGCAGTCTACTGGATTTTGGTTAGTATTCATAGCTTTTGTTAGTGTAAATTAGCAATCTGATTATATGTGAGATTTCAAGTCAGTTGGACAGAGGAAGAAACATTTCTTACAAGGGTGTGAAAATCTCTTCCCAACAAACACGTTTTAAAATCGTGAGATTGATAGCGATATGTAATGGATCGAAGTGGATAATATCTGCTAGTGATGAGCTTGGACTGTTACAATTTGTGCGGCTGGGTAGTGTGCCAGCGAGAATGCTGGGCCAACAAGGGGTAGATTGTGAGATCATATATTGGTTACAATGGGGAACGAAACATTCCCGATAAGGGTGTGGAAACCTCTCCCTTGCAGACACGTTTTAGGAGACAATATATGCTAGCGGTAGACTTGGCTCTTACGGTATATCTCCCTAAACTTAGAATATGACTATAAGATCCATTGGAATTTGTTGGGTTTGGCGTATTGTGTTTAACCTCTTACAATGCGAAGAGAAGAGGATAGGTAGTTTAAGGAAGAAGGATTCAGTGGATGTGGGGTTGTGAGGTCCCACGTCGGTTGGAGAGGGGAACGAAACATTTCTTACAAAGGTGTGGAAACCTCTCTGGCAGATGCGTTTTAAAACTTTGAGGGGAAGTCCTTGAAGGGAAAGCCAAAAAAAGACAATATCTGCTAGCGGTGGGTTAGATCTATTACTGGAGTGGAGACTCTGTCAAACGAGTTATGGCACACCTATGATGGTAAAGATGAGGAGAAAGCCTTCTTCTGGAAGGACAAATTCATAGGTAGTTTACTCTTTGCAGCTTGGTTCCTACTGTTCTTGGTTCGAAGTCAGATAATTCATCAATCTTGGATCTCCTTGGGAGTGAGTTGTGTTGGATGATGATCCACCCTCTTTGGAGGGCTCAGCGTCCTCGCTGGCACACCGTCCGGTGTTTGACTCTAATACCATTTGTACTAGTTCAAGCCTACCGCTAGCAGATACTAATTGTTTTGGCTTGTTTCGTATCGTCGTCAGCCTCACGATTTTATAACGCGTCCGTCGGAGAAATGTTTCCACATCCTTACAAAGAATGCTTCATTCTTTTCTCCAACCGATATGAGATATCATAGATTTGTTTGAACTTTTCAATACATCAATGGGAAGTTCTTTTGTTTCGAAAAAAGCATAAATTAATATGCTTAGACTTTAAATTACATGCAAATATGTAGAGGAAGCTGCCATAAGTTGGAAACCGACATACCCAGTTTCCCTCTTACCTTGGTTTTGATGTTAGCATTTCTTTGTTGAACAGTTAATTAGGTATGGACTGGTAATTGCGTTCAACTTGGCAATGTGGGGATGTTATGTCAACAGCTTAAAAGCTCTCTCGTCATTACAAGCTACAGGGACCAACTTTTCAGCTAACTTTCTTTGTTCTGGTCTAGCCGGTTTCTTCTTGTTCGAAGAACCATTATCATTTCAGGTAAATCCTTCATCATATCCATAG

mRNA sequence

CACGAAGCTGAATCTCAAAACTTAGGACTAAGCCGGTTGGCATCCCGACCGCGATCAGTCCAAGCCGGGTTCGCCACGTATGGAGGTTTTCGTCTTCTTGCCTACCGCACAACTCAGAGAGGAGAATTTTGAACCCTGCAATGGAAGGGAGAAAGGGGAAGAAGGGTTACATGTGGGCAATTTCAGCTGGTCTCAACGCTGCGTTCGCCGCCATTGCCGCCAAGCTTTTCTCCTCTACGTTAATTAGGTATGGACTGGTAATTGCGTTCAACTTGGCAATGTGGGGATGTTATGTCAACAGCTTAAAAGCTCTCTCGTCATTACAAGCTACAGGGACCAACTTTTCAGCTAACTTTCTTTGTTCTGGTCTAGCCGGTTTCTTCTTGTTCGAAGAACCATTATCATTTCAGGTAAATCCTTCATCATATCCATAG

Coding sequence (CDS)

ATGGAAGGGAGAAAGGGGAAGAAGGGTTACATGTGGGCAATTTCAGCTGGTCTCAACGCTGCGTTCGCCGCCATTGCCGCCAAGCTTTTCTCCTCTACGTTAATTAGGTATGGACTGGTAATTGCGTTCAACTTGGCAATGTGGGGATGTTATGTCAACAGCTTAAAAGCTCTCTCGTCATTACAAGCTACAGGGACCAACTTTTCAGCTAACTTTCTTTGTTCTGGTCTAGCCGGTTTCTTCTTGTTCGAAGAACCATTATCATTTCAGGTAAATCCTTCATCATATCCATAG

Protein sequence

MEGRKGKKGYMWAISAGLNAAFAAIAAKLFSSTLIRYGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEPLSFQVNPSSYP

Homology

[Close]

BLAST of Cp4.1LG11g02470.1 vs. TrEMBL
Match: A0A0A0LPF1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G365690 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 8.9e-35
Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 1


Query: 5  KGKKGYMWAISAGLNAAFAAIAAKLFSSTLIRYGLVIAFNLAMWGCYVNSLKALSSLQAT 64
          +G KGY+WAISAGLNAAFAAIAAKLFS TLIRY LVIAFNLAMWGCYVNSLKALSSLQAT
Sbjct: 2  EGSKGYVWAISAGLNAAFAAIAAKLFSYTLIRYVLVIAFNLAMWGCYVNSLKALSSLQAT 61

Query: 65 GTNFSANFLCSGLAGFFLFEEPLSFQ 91
          GTNFSANFLCSGLAGFFLFEE LSF+
Sbjct: 62 GTNFSANFLCSGLAGFFLFEEALSFR 87

[Close]

BLAST of Cp4.1LG11g02470.1 vs. TrEMBL
Match: U5GGV2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s25710g PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 8.6e-30
Identity = 71/92 (77.17%), Postives = 80/92 (86.96%), Query Frame = 1


Query: 1  MEGRKGKKGYMWAISAGLNAAFAAIAAKLFSSTLIRYGLVIAFNLAMWGCYVNSLKALSS 60
          M+G K + GY+WAISAGLNAAFAAIAAK FS  +I+YGLV+ FN+ MWGCYVNSLKALSS
Sbjct: 1  MDGTK-RTGYVWAISAGLNAAFAAIAAKFFSYQVIKYGLVVLFNVTMWGCYVNSLKALSS 60

Query: 61 LQATGTNFSANFLCSGLAGFFLFEEPLSFQVN 93
          LQAT TNF+ANFL SGLAGFFLF+E LS QVN
Sbjct: 61 LQATVTNFAANFLSSGLAGFFLFKETLSVQVN 91

[Close]

BLAST of Cp4.1LG11g02470.1 vs. TrEMBL
Match: E0CPJ4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g13700 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.5e-29
Identity = 71/90 (78.89%), Postives = 79/90 (87.78%), Query Frame = 1


Query: 1  MEGRKGKKGYMWAISAGLNAAFAAIAAKLFSSTLIRYGLVIAFNLAMWGCYVNSLKALSS 60
          MEG+K + GY WAISAG+NAA AAI+AKLFSS +I+YGLVI FN+ MWGCYVNSLKALSS
Sbjct: 1  MEGKKSR-GYAWAISAGVNAALAAISAKLFSSQVIKYGLVIIFNVTMWGCYVNSLKALSS 60

Query: 61 LQATGTNFSANFLCSGLAGFFLFEEPLSFQ 91
          LQAT TNF+ANFL SGLAGFFLFEE L FQ
Sbjct: 61 LQATVTNFAANFLSSGLAGFFLFEEALPFQ 89

[Close]

BLAST of Cp4.1LG11g02470.1 vs. TrEMBL
Match: A0A061FD07_THECC (Cell growth defect factor-2 isoform 3 (Fragment) OS=Theobroma cacao GN=TCM_034169 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 3.3e-29
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 1


Query: 1   MEGRKGKKGYMWAISAGLNAAFAAIAAKLFSSTLIRYGLVIAFNLAMWGCYVNSLKALSS 60
           M+G + +KGY WAISAGLNAAFAAI+AK F S L+RYGLVI FN+ MWGCYVNSLKALSS
Sbjct: 29  MDGSR-RKGYAWAISAGLNAAFAAISAKFFLSPLVRYGLVIIFNVIMWGCYVNSLKALSS 88

Query: 61  LQATGTNFSANFLCSGLAGFFLFEEPLSFQV 92
           LQAT TNF+ NFL SG AG FLFEEPLSF+V
Sbjct: 89  LQATVTNFATNFLTSGFAGSFLFEEPLSFRV 118

[Close]

BLAST of Cp4.1LG11g02470.1 vs. TrEMBL
Match: M5XS37_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026034mg PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 3.3e-29
Identity = 69/90 (76.67%), Postives = 77/90 (85.56%), Query Frame = 1


Query: 1  MEGRKGKKGYMWAISAGLNAAFAAIAAKLFSSTLIRYGLVIAFNLAMWGCYVNSLKALSS 60
          MEG   KKGY WAISAGLNAA AA++AKL +  ++RYGLVI FN  MWGCYVNSLKALSS
Sbjct: 1  MEGNN-KKGYAWAISAGLNAALAAVSAKLITPQIVRYGLVILFNATMWGCYVNSLKALSS 60

Query: 61 LQATGTNFSANFLCSGLAGFFLFEEPLSFQ 91
          LQAT TNF+ANFL SGLAG+FLF+EPLSFQ
Sbjct: 61 LQATVTNFAANFLSSGLAGYFLFQEPLSFQ 89

[Close]

BLAST of Cp4.1LG11g02470.1 vs. TAIR10
Match: AT1G30845.1 (AT1G30845.1 unknown protein)

HSP 1 Score: 115.2 bits (287), Expect = 2.3e-26
Identity = 57/84 (67.86%), Postives = 72/84 (85.71%), Query Frame = 1


Query: 7  KKGYMWAISAGLNAAFAAIAAKLFSSTLIRYGLVIAFNLAMWGCYVNSLKALSSLQATGT 66
          ++GY+ A++AGLNAA AAI+AK F+S +I+YGLV+  N+ MW CYVNSL+ALSSLQAT T
Sbjct: 8  QRGYISAVAAGLNAALAAISAKFFTSLVIKYGLVVICNVVMWACYVNSLRALSSLQATVT 67

Query: 67 NFSANFLCSGLAGFFLFEEPLSFQ 91
          NF+ANFL SGLAG FLF+E LSF+
Sbjct: 68 NFAANFLSSGLAGLFLFQESLSFR 91

[Close]

BLAST of Cp4.1LG11g02470.1 vs. NCBI nr
Match: gi|449469907|ref|XP_004152660.1| (PREDICTED: uncharacterized protein LOC101208185 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 1.3e-34
Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 1


Query: 5  KGKKGYMWAISAGLNAAFAAIAAKLFSSTLIRYGLVIAFNLAMWGCYVNSLKALSSLQAT 64
          +G KGY+WAISAGLNAAFAAIAAKLFS TLIRY LVIAFNLAMWGCYVNSLKALSSLQAT
Sbjct: 2  EGSKGYVWAISAGLNAAFAAIAAKLFSYTLIRYVLVIAFNLAMWGCYVNSLKALSSLQAT 61

Query: 65 GTNFSANFLCSGLAGFFLFEEPLSFQ 91
          GTNFSANFLCSGLAGFFLFEE LSF+
Sbjct: 62 GTNFSANFLCSGLAGFFLFEEALSFR 87

[Close]

BLAST of Cp4.1LG11g02470.1 vs. NCBI nr
Match: gi|659088061|ref|XP_008444781.1| (PREDICTED: uncharacterized protein LOC103488027 [Cucumis melo])

HSP 1 Score: 152.5 bits (384), Expect = 3.7e-34
Identity = 77/86 (89.53%), Postives = 80/86 (93.02%), Query Frame = 1


Query: 5  KGKKGYMWAISAGLNAAFAAIAAKLFSSTLIRYGLVIAFNLAMWGCYVNSLKALSSLQAT 64
          +G KGY+WAISAGLNAA +AIAAKLFS T  RYGLVIAFNLAMWGCYVNSLKALSSLQAT
Sbjct: 2  EGSKGYVWAISAGLNAALSAIAAKLFSYTFFRYGLVIAFNLAMWGCYVNSLKALSSLQAT 61

Query: 65 GTNFSANFLCSGLAGFFLFEEPLSFQ 91
          GTNFSANFLCSGLAGFFLFEE LSFQ
Sbjct: 62 GTNFSANFLCSGLAGFFLFEEALSFQ 87

[Close]

BLAST of Cp4.1LG11g02470.1 vs. NCBI nr
Match: gi|731429792|ref|XP_010664769.1| (PREDICTED: uncharacterized protein LOC100259103 isoform X2 [Vitis vinifera])

HSP 1 Score: 138.3 bits (347), Expect = 7.3e-30
Identity = 72/91 (79.12%), Postives = 80/91 (87.91%), Query Frame = 1


Query: 1  MEGRKGKKGYMWAISAGLNAAFAAIAAKLFSSTLIRYGLVIAFNLAMWGCYVNSLKALSS 60
          MEG+K + GY WAISAG+NAA AAI+AKLFSS +I+YGLVI FN+ MWGCYVNSLKALSS
Sbjct: 1  MEGKKSR-GYAWAISAGVNAALAAISAKLFSSQVIKYGLVIIFNVTMWGCYVNSLKALSS 60

Query: 61 LQATGTNFSANFLCSGLAGFFLFEEPLSFQV 92
          LQAT TNF+ANFL SGLAGFFLFEE L FQV
Sbjct: 61 LQATVTNFAANFLSSGLAGFFLFEEALPFQV 90

[Close]

BLAST of Cp4.1LG11g02470.1 vs. NCBI nr
Match: gi|566173243|ref|XP_006383734.1| (hypothetical protein POPTR_0005s25710g [Populus trichocarpa])

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-29
Identity = 71/92 (77.17%), Postives = 80/92 (86.96%), Query Frame = 1


Query: 1  MEGRKGKKGYMWAISAGLNAAFAAIAAKLFSSTLIRYGLVIAFNLAMWGCYVNSLKALSS 60
          M+G K + GY+WAISAGLNAAFAAIAAK FS  +I+YGLV+ FN+ MWGCYVNSLKALSS
Sbjct: 1  MDGTK-RTGYVWAISAGLNAAFAAIAAKFFSYQVIKYGLVVLFNVTMWGCYVNSLKALSS 60

Query: 61 LQATGTNFSANFLCSGLAGFFLFEEPLSFQVN 93
          LQAT TNF+ANFL SGLAGFFLF+E LS QVN
Sbjct: 61 LQATVTNFAANFLSSGLAGFFLFKETLSVQVN 91

[Close]

BLAST of Cp4.1LG11g02470.1 vs. NCBI nr
Match: gi|359492195|ref|XP_003634377.1| (PREDICTED: uncharacterized protein LOC100259103 isoform X1 [Vitis vinifera])

HSP 1 Score: 136.7 bits (343), Expect = 2.1e-29
Identity = 71/90 (78.89%), Postives = 79/90 (87.78%), Query Frame = 1


Query: 1  MEGRKGKKGYMWAISAGLNAAFAAIAAKLFSSTLIRYGLVIAFNLAMWGCYVNSLKALSS 60
          MEG+K + GY WAISAG+NAA AAI+AKLFSS +I+YGLVI FN+ MWGCYVNSLKALSS
Sbjct: 1  MEGKKSR-GYAWAISAGVNAALAAISAKLFSSQVIKYGLVIIFNVTMWGCYVNSLKALSS 60

Query: 61 LQATGTNFSANFLCSGLAGFFLFEEPLSFQ 91
          LQAT TNF+ANFL SGLAGFFLFEE L FQ
Sbjct: 61 LQATVTNFAANFLSSGLAGFFLFEEALPFQ 89

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g02470.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g02470.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPF1_CUCSA	8.9e-35	91.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G365690 PE=4 SV=1	[more]
U5GGV2_POPTR	8.6e-30	77.17	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s25710g PE=4 SV=1	[more]
E0CPJ4_VITVI	1.5e-29	78.89	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g13700 PE=4 SV=...	[more]
A0A061FD07_THECC	3.3e-29	76.92	Cell growth defect factor-2 isoform 3 (Fragment) OS=Theobroma cacao GN=TCM_03416...	[more]
M5XS37_PRUPE	3.3e-29	76.67	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026034mg PE=4 SV=1	[more]

BLAST of Cp4.1LG11g02470.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G30845.1	2.3e-26	67.86	unknown protein	[more]

BLAST of Cp4.1LG11g02470.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449469907\|ref\|XP_004152660.1\|	1.3e-34	91.86	PREDICTED: uncharacterized protein LOC101208185 [Cucumis sativus]	[more]
gi\|659088061\|ref\|XP_008444781.1\|	3.7e-34	89.53	PREDICTED: uncharacterized protein LOC103488027 [Cucumis melo]	[more]
gi\|731429792\|ref\|XP_010664769.1\|	7.3e-30	79.12	PREDICTED: uncharacterized protein LOC100259103 isoform X2 [Vitis vinifera]	[more]
gi\|566173243\|ref\|XP_006383734.1\|	1.2e-29	77.17	hypothetical protein POPTR_0005s25710g [Populus trichocarpa]	[more]
gi\|359492195\|ref\|XP_003634377.1\|	2.1e-29	78.89	PREDICTED: uncharacterized protein LOC100259103 isoform X1 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG11g02470	Cp4.1LG11g02470	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG11g02470.1:five_prime_utr:001	Cp4.1LG11g02470.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG11g02470.1:cds:001	Cp4.1LG11g02470.1:cds:001	CDS
Cp4.1LG11g02470.1:cds:002	Cp4.1LG11g02470.1:cds:002	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG11g02470.1	Cp4.1LG11g02470.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31965	FAMILY NOT NAMED	coord: 9..90 score: 4.3
None	No IPR available	PANTHER	PTHR31965:SF1	TRANSMEMBRANE PROTEIN 42	coord: 9..90 score: 4.3