Cp4.1LG11g02470 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG11g02470
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionCell growth defect factor 2
LocationCp4.1LG11 : 1309379 .. 1311285 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CACGAAGCTGAATCTCAAAACTTAGGACTAAGCCGGTTGGCATCCCGACCGCGATCAGTCCAAGCCGGGTTCGCCACGTATGGAGGTTTTCGTCTTCTTGCCTACCGCACAACTCAGAGAGGAGAATTTTGAACCCTGCAATGGAAGGGAGAAAGGGGAAGAAGGGTTACATGTGGGCAATTTCAGCTGGTCTCAACGCTGCGTTCGCCGCCATTGCCGCCAAGCTTTTCTCCTCTACGGTAATCTTTCTCCATTTCTTTCCCGTACGAATCGTTTCACGATGATGCGATGATTTGCCCTAATTTGTATGAACCAACACAATCACGAGCTGCTTTTGTCAATTGTCTGAAGTTTTTCATCATTCTCGTTCTAATCATATTGCAATCGCATCTGCTCATATAATATCGACGTTGCAAATTGGCAGTCTACTGGATTTTGGTTAGTATTCATAGCTTTTGTTAGTGTAAATTAGCAATCTGATTATATGTGAGATTTCAAGTCAGTTGGACAGAGGAAGAAACATTTCTTACAAGGGTGTGAAAATCTCTTCCCAACAAACACGTTTTAAAATCGTGAGATTGATAGCGATATGTAATGGATCGAAGTGGATAATATCTGCTAGTGATGAGCTTGGACTGTTACAATTTGTGCGGCTGGGTAGTGTGCCAGCGAGAATGCTGGGCCAACAAGGGGTAGATTGTGAGATCATATATTGGTTACAATGGGGAACGAAACATTCCCGATAAGGGTGTGGAAACCTCTCCCTTGCAGACACGTTTTAGGAGACAATATATGCTAGCGGTAGACTTGGCTCTTACGGTATATCTCCCTAAACTTAGAATATGACTATAAGATCCATTGGAATTTGTTGGGTTTGGCGTATTGTGTTTAACCTCTTACAATGCGAAGAGAAGAGGATAGGTAGTTTAAGGAAGAAGGATTCAGTGGATGTGGGGTTGTGAGGTCCCACGTCGGTTGGAGAGGGGAACGAAACATTTCTTACAAAGGTGTGGAAACCTCTCTGGCAGATGCGTTTTAAAACTTTGAGGGGAAGTCCTTGAAGGGAAAGCCAAAAAAAGACAATATCTGCTAGCGGTGGGTTAGATCTATTACTGGAGTGGAGACTCTGTCAAACGAGTTATGGCACACCTATGATGGTAAAGATGAGGAGAAAGCCTTCTTCTGGAAGGACAAATTCATAGGTAGTTTACTCTTTGCAGCTTGGTTCCTACTGTTCTTGGTTCGAAGTCAGATAATTCATCAATCTTGGATCTCCTTGGGAGTGAGTTGTGTTGGATGATGATCCACCCTCTTTGGAGGGCTCAGCGTCCTCGCTGGCACACCGTCCGGTGTTTGACTCTAATACCATTTGTACTAGTTCAAGCCTACCGCTAGCAGATACTAATTGTTTTGGCTTGTTTCGTATCGTCGTCAGCCTCACGATTTTATAACGCGTCCGTCGGAGAAATGTTTCCACATCCTTACAAAGAATGCTTCATTCTTTTCTCCAACCGATATGAGATATCATAGATTTGTTTGAACTTTTCAATACATCAATGGGAAGTTCTTTTGTTTCGAAAAAAGCATAAATTAATATGCTTAGACTTTAAATTACATGCAAATATGTAGAGGAAGCTGCCATAAGTTGGAAACCGACATACCCAGTTTCCCTCTTACCTTGGTTTTGATGTTAGCATTTCTTTGTTGAACAGTTAATTAGGTATGGACTGGTAATTGCGTTCAACTTGGCAATGTGGGGATGTTATGTCAACAGCTTAAAAGCTCTCTCGTCATTACAAGCTACAGGGACCAACTTTTCAGCTAACTTTCTTTGTTCTGGTCTAGCCGGTTTCTTCTTGTTCGAAGAACCATTATCATTTCAGGTAAATCCTTCATCATATCCATAG

mRNA sequence

CACGAAGCTGAATCTCAAAACTTAGGACTAAGCCGGTTGGCATCCCGACCGCGATCAGTCCAAGCCGGGTTCGCCACGTATGGAGGTTTTCGTCTTCTTGCCTACCGCACAACTCAGAGAGGAGAATTTTGAACCCTGCAATGGAAGGGAGAAAGGGGAAGAAGGGTTACATGTGGGCAATTTCAGCTGGTCTCAACGCTGCGTTCGCCGCCATTGCCGCCAAGCTTTTCTCCTCTACGTTAATTAGGTATGGACTGGTAATTGCGTTCAACTTGGCAATGTGGGGATGTTATGTCAACAGCTTAAAAGCTCTCTCGTCATTACAAGCTACAGGGACCAACTTTTCAGCTAACTTTCTTTGTTCTGGTCTAGCCGGTTTCTTCTTGTTCGAAGAACCATTATCATTTCAGGTAAATCCTTCATCATATCCATAG

Coding sequence (CDS)

ATGGAAGGGAGAAAGGGGAAGAAGGGTTACATGTGGGCAATTTCAGCTGGTCTCAACGCTGCGTTCGCCGCCATTGCCGCCAAGCTTTTCTCCTCTACGTTAATTAGGTATGGACTGGTAATTGCGTTCAACTTGGCAATGTGGGGATGTTATGTCAACAGCTTAAAAGCTCTCTCGTCATTACAAGCTACAGGGACCAACTTTTCAGCTAACTTTCTTTGTTCTGGTCTAGCCGGTTTCTTCTTGTTCGAAGAACCATTATCATTTCAGGTAAATCCTTCATCATATCCATAG

Protein sequence

MEGRKGKKGYMWAISAGLNAAFAAIAAKLFSSTLIRYGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEPLSFQVNPSSYP
BLAST of Cp4.1LG11g02470 vs. TrEMBL
Match: A0A0A0LPF1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G365690 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 8.9e-35
Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 1

Query: 5  KGKKGYMWAISAGLNAAFAAIAAKLFSSTLIRYGLVIAFNLAMWGCYVNSLKALSSLQAT 64
          +G KGY+WAISAGLNAAFAAIAAKLFS TLIRY LVIAFNLAMWGCYVNSLKALSSLQAT
Sbjct: 2  EGSKGYVWAISAGLNAAFAAIAAKLFSYTLIRYVLVIAFNLAMWGCYVNSLKALSSLQAT 61

Query: 65 GTNFSANFLCSGLAGFFLFEEPLSFQ 91
          GTNFSANFLCSGLAGFFLFEE LSF+
Sbjct: 62 GTNFSANFLCSGLAGFFLFEEALSFR 87

BLAST of Cp4.1LG11g02470 vs. TrEMBL
Match: U5GGV2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s25710g PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 8.6e-30
Identity = 71/92 (77.17%), Postives = 80/92 (86.96%), Query Frame = 1

Query: 1  MEGRKGKKGYMWAISAGLNAAFAAIAAKLFSSTLIRYGLVIAFNLAMWGCYVNSLKALSS 60
          M+G K + GY+WAISAGLNAAFAAIAAK FS  +I+YGLV+ FN+ MWGCYVNSLKALSS
Sbjct: 1  MDGTK-RTGYVWAISAGLNAAFAAIAAKFFSYQVIKYGLVVLFNVTMWGCYVNSLKALSS 60

Query: 61 LQATGTNFSANFLCSGLAGFFLFEEPLSFQVN 93
          LQAT TNF+ANFL SGLAGFFLF+E LS QVN
Sbjct: 61 LQATVTNFAANFLSSGLAGFFLFKETLSVQVN 91

BLAST of Cp4.1LG11g02470 vs. TrEMBL
Match: E0CPJ4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g13700 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.5e-29
Identity = 71/90 (78.89%), Postives = 79/90 (87.78%), Query Frame = 1

Query: 1  MEGRKGKKGYMWAISAGLNAAFAAIAAKLFSSTLIRYGLVIAFNLAMWGCYVNSLKALSS 60
          MEG+K + GY WAISAG+NAA AAI+AKLFSS +I+YGLVI FN+ MWGCYVNSLKALSS
Sbjct: 1  MEGKKSR-GYAWAISAGVNAALAAISAKLFSSQVIKYGLVIIFNVTMWGCYVNSLKALSS 60

Query: 61 LQATGTNFSANFLCSGLAGFFLFEEPLSFQ 91
          LQAT TNF+ANFL SGLAGFFLFEE L FQ
Sbjct: 61 LQATVTNFAANFLSSGLAGFFLFEEALPFQ 89

BLAST of Cp4.1LG11g02470 vs. TrEMBL
Match: A0A061FD07_THECC (Cell growth defect factor-2 isoform 3 (Fragment) OS=Theobroma cacao GN=TCM_034169 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 3.3e-29
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 1

Query: 1   MEGRKGKKGYMWAISAGLNAAFAAIAAKLFSSTLIRYGLVIAFNLAMWGCYVNSLKALSS 60
           M+G + +KGY WAISAGLNAAFAAI+AK F S L+RYGLVI FN+ MWGCYVNSLKALSS
Sbjct: 29  MDGSR-RKGYAWAISAGLNAAFAAISAKFFLSPLVRYGLVIIFNVIMWGCYVNSLKALSS 88

Query: 61  LQATGTNFSANFLCSGLAGFFLFEEPLSFQV 92
           LQAT TNF+ NFL SG AG FLFEEPLSF+V
Sbjct: 89  LQATVTNFATNFLTSGFAGSFLFEEPLSFRV 118

BLAST of Cp4.1LG11g02470 vs. TrEMBL
Match: M5XS37_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026034mg PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 3.3e-29
Identity = 69/90 (76.67%), Postives = 77/90 (85.56%), Query Frame = 1

Query: 1  MEGRKGKKGYMWAISAGLNAAFAAIAAKLFSSTLIRYGLVIAFNLAMWGCYVNSLKALSS 60
          MEG   KKGY WAISAGLNAA AA++AKL +  ++RYGLVI FN  MWGCYVNSLKALSS
Sbjct: 1  MEGNN-KKGYAWAISAGLNAALAAVSAKLITPQIVRYGLVILFNATMWGCYVNSLKALSS 60

Query: 61 LQATGTNFSANFLCSGLAGFFLFEEPLSFQ 91
          LQAT TNF+ANFL SGLAG+FLF+EPLSFQ
Sbjct: 61 LQATVTNFAANFLSSGLAGYFLFQEPLSFQ 89

BLAST of Cp4.1LG11g02470 vs. TAIR10
Match: AT1G30845.1 (AT1G30845.1 unknown protein)

HSP 1 Score: 115.2 bits (287), Expect = 2.3e-26
Identity = 57/84 (67.86%), Postives = 72/84 (85.71%), Query Frame = 1

Query: 7  KKGYMWAISAGLNAAFAAIAAKLFSSTLIRYGLVIAFNLAMWGCYVNSLKALSSLQATGT 66
          ++GY+ A++AGLNAA AAI+AK F+S +I+YGLV+  N+ MW CYVNSL+ALSSLQAT T
Sbjct: 8  QRGYISAVAAGLNAALAAISAKFFTSLVIKYGLVVICNVVMWACYVNSLRALSSLQATVT 67

Query: 67 NFSANFLCSGLAGFFLFEEPLSFQ 91
          NF+ANFL SGLAG FLF+E LSF+
Sbjct: 68 NFAANFLSSGLAGLFLFQESLSFR 91

BLAST of Cp4.1LG11g02470 vs. NCBI nr
Match: gi|449469907|ref|XP_004152660.1| (PREDICTED: uncharacterized protein LOC101208185 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 1.3e-34
Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 1

Query: 5  KGKKGYMWAISAGLNAAFAAIAAKLFSSTLIRYGLVIAFNLAMWGCYVNSLKALSSLQAT 64
          +G KGY+WAISAGLNAAFAAIAAKLFS TLIRY LVIAFNLAMWGCYVNSLKALSSLQAT
Sbjct: 2  EGSKGYVWAISAGLNAAFAAIAAKLFSYTLIRYVLVIAFNLAMWGCYVNSLKALSSLQAT 61

Query: 65 GTNFSANFLCSGLAGFFLFEEPLSFQ 91
          GTNFSANFLCSGLAGFFLFEE LSF+
Sbjct: 62 GTNFSANFLCSGLAGFFLFEEALSFR 87

BLAST of Cp4.1LG11g02470 vs. NCBI nr
Match: gi|659088061|ref|XP_008444781.1| (PREDICTED: uncharacterized protein LOC103488027 [Cucumis melo])

HSP 1 Score: 152.5 bits (384), Expect = 3.7e-34
Identity = 77/86 (89.53%), Postives = 80/86 (93.02%), Query Frame = 1

Query: 5  KGKKGYMWAISAGLNAAFAAIAAKLFSSTLIRYGLVIAFNLAMWGCYVNSLKALSSLQAT 64
          +G KGY+WAISAGLNAA +AIAAKLFS T  RYGLVIAFNLAMWGCYVNSLKALSSLQAT
Sbjct: 2  EGSKGYVWAISAGLNAALSAIAAKLFSYTFFRYGLVIAFNLAMWGCYVNSLKALSSLQAT 61

Query: 65 GTNFSANFLCSGLAGFFLFEEPLSFQ 91
          GTNFSANFLCSGLAGFFLFEE LSFQ
Sbjct: 62 GTNFSANFLCSGLAGFFLFEEALSFQ 87

BLAST of Cp4.1LG11g02470 vs. NCBI nr
Match: gi|731429792|ref|XP_010664769.1| (PREDICTED: uncharacterized protein LOC100259103 isoform X2 [Vitis vinifera])

HSP 1 Score: 138.3 bits (347), Expect = 7.3e-30
Identity = 72/91 (79.12%), Postives = 80/91 (87.91%), Query Frame = 1

Query: 1  MEGRKGKKGYMWAISAGLNAAFAAIAAKLFSSTLIRYGLVIAFNLAMWGCYVNSLKALSS 60
          MEG+K + GY WAISAG+NAA AAI+AKLFSS +I+YGLVI FN+ MWGCYVNSLKALSS
Sbjct: 1  MEGKKSR-GYAWAISAGVNAALAAISAKLFSSQVIKYGLVIIFNVTMWGCYVNSLKALSS 60

Query: 61 LQATGTNFSANFLCSGLAGFFLFEEPLSFQV 92
          LQAT TNF+ANFL SGLAGFFLFEE L FQV
Sbjct: 61 LQATVTNFAANFLSSGLAGFFLFEEALPFQV 90

BLAST of Cp4.1LG11g02470 vs. NCBI nr
Match: gi|566173243|ref|XP_006383734.1| (hypothetical protein POPTR_0005s25710g [Populus trichocarpa])

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-29
Identity = 71/92 (77.17%), Postives = 80/92 (86.96%), Query Frame = 1

Query: 1  MEGRKGKKGYMWAISAGLNAAFAAIAAKLFSSTLIRYGLVIAFNLAMWGCYVNSLKALSS 60
          M+G K + GY+WAISAGLNAAFAAIAAK FS  +I+YGLV+ FN+ MWGCYVNSLKALSS
Sbjct: 1  MDGTK-RTGYVWAISAGLNAAFAAIAAKFFSYQVIKYGLVVLFNVTMWGCYVNSLKALSS 60

Query: 61 LQATGTNFSANFLCSGLAGFFLFEEPLSFQVN 93
          LQAT TNF+ANFL SGLAGFFLF+E LS QVN
Sbjct: 61 LQATVTNFAANFLSSGLAGFFLFKETLSVQVN 91

BLAST of Cp4.1LG11g02470 vs. NCBI nr
Match: gi|359492195|ref|XP_003634377.1| (PREDICTED: uncharacterized protein LOC100259103 isoform X1 [Vitis vinifera])

HSP 1 Score: 136.7 bits (343), Expect = 2.1e-29
Identity = 71/90 (78.89%), Postives = 79/90 (87.78%), Query Frame = 1

Query: 1  MEGRKGKKGYMWAISAGLNAAFAAIAAKLFSSTLIRYGLVIAFNLAMWGCYVNSLKALSS 60
          MEG+K + GY WAISAG+NAA AAI+AKLFSS +I+YGLVI FN+ MWGCYVNSLKALSS
Sbjct: 1  MEGKKSR-GYAWAISAGVNAALAAISAKLFSSQVIKYGLVIIFNVTMWGCYVNSLKALSS 60

Query: 61 LQATGTNFSANFLCSGLAGFFLFEEPLSFQ 91
          LQAT TNF+ANFL SGLAGFFLFEE L FQ
Sbjct: 61 LQATVTNFAANFLSSGLAGFFLFEEALPFQ 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LPF1_CUCSA8.9e-3591.86Uncharacterized protein OS=Cucumis sativus GN=Csa_2G365690 PE=4 SV=1[more]
U5GGV2_POPTR8.6e-3077.17Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s25710g PE=4 SV=1[more]
E0CPJ4_VITVI1.5e-2978.89Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g13700 PE=4 SV=... [more]
A0A061FD07_THECC3.3e-2976.92Cell growth defect factor-2 isoform 3 (Fragment) OS=Theobroma cacao GN=TCM_03416... [more]
M5XS37_PRUPE3.3e-2976.67Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026034mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G30845.12.3e-2667.86 unknown protein[more]
Match NameE-valueIdentityDescription
gi|449469907|ref|XP_004152660.1|1.3e-3491.86PREDICTED: uncharacterized protein LOC101208185 [Cucumis sativus][more]
gi|659088061|ref|XP_008444781.1|3.7e-3489.53PREDICTED: uncharacterized protein LOC103488027 [Cucumis melo][more]
gi|731429792|ref|XP_010664769.1|7.3e-3079.12PREDICTED: uncharacterized protein LOC100259103 isoform X2 [Vitis vinifera][more]
gi|566173243|ref|XP_006383734.1|1.2e-2977.17hypothetical protein POPTR_0005s25710g [Populus trichocarpa][more]
gi|359492195|ref|XP_003634377.1|2.1e-2978.89PREDICTED: uncharacterized protein LOC100259103 isoform X1 [Vitis vinifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g02470.1Cp4.1LG11g02470.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31965FAMILY NOT NAMEDcoord: 9..90
score: 4.3
NoneNo IPR availablePANTHERPTHR31965:SF1TRANSMEMBRANE PROTEIN 42coord: 9..90
score: 4.3

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG11g02470Cucurbita pepo (Zucchini)cpecpeB061
Cp4.1LG11g02470Cucurbita pepo (Zucchini)cpecpeB110
Cp4.1LG11g02470Cucurbita pepo (Zucchini)cpecpeB112
Cp4.1LG11g02470Cucurbita pepo (Zucchini)cpecpeB125
Cp4.1LG11g02470Cucurbita pepo (Zucchini)cpecpeB136
Cp4.1LG11g02470Cucurbita pepo (Zucchini)cpecpeB146
Cp4.1LG11g02470Cucumber (Gy14) v1cgycpeB0877
Cp4.1LG11g02470Cucurbita maxima (Rimu)cmacpeB030
Cp4.1LG11g02470Cucurbita maxima (Rimu)cmacpeB179
Cp4.1LG11g02470Cucurbita maxima (Rimu)cmacpeB461
Cp4.1LG11g02470Cucurbita moschata (Rifu)cmocpeB006
Cp4.1LG11g02470Cucurbita moschata (Rifu)cmocpeB154
Cp4.1LG11g02470Cucurbita moschata (Rifu)cmocpeB421
Cp4.1LG11g02470Wild cucumber (PI 183967)cpecpiB124
Cp4.1LG11g02470Wild cucumber (PI 183967)cpecpiB106
Cp4.1LG11g02470Cucumber (Chinese Long) v2cpecuB110
Cp4.1LG11g02470Bottle gourd (USVL1VR-Ls)cpelsiB086
Cp4.1LG11g02470Watermelon (Charleston Gray)cpewcgB106
Cp4.1LG11g02470Watermelon (Charleston Gray)cpewcgB114
Cp4.1LG11g02470Watermelon (97103) v1cpewmB101
Cp4.1LG11g02470Watermelon (97103) v1cpewmB109
Cp4.1LG11g02470Watermelon (97103) v1cpewmB115
Cp4.1LG11g02470Melon (DHL92) v3.5.1cpemeB095
Cp4.1LG11g02470Cucumber (Gy14) v2cgybcpeB296
Cp4.1LG11g02470Cucumber (Gy14) v2cgybcpeB716
Cp4.1LG11g02470Cucumber (Gy14) v2cgybcpeB897
Cp4.1LG11g02470Melon (DHL92) v3.6.1cpemedB119
Cp4.1LG11g02470Melon (DHL92) v3.6.1cpemedB134
Cp4.1LG11g02470Silver-seed gourdcarcpeB0152
Cp4.1LG11g02470Silver-seed gourdcarcpeB1307
Cp4.1LG11g02470Silver-seed gourdcarcpeB1352
Cp4.1LG11g02470Cucumber (Chinese Long) v3cpecucB0121
Cp4.1LG11g02470Cucumber (Chinese Long) v3cpecucB0133
Cp4.1LG11g02470Cucumber (Chinese Long) v3cpecucB0139
Cp4.1LG11g02470Wax gourdcpewgoB0153
Cp4.1LG11g02470Wax gourdcpewgoB0165