Cp4.1LG11g01450.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG11g01450.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG11 : 881082 .. 881537 (+)
Sequence length	456

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTGCCGTTCAGTGGATAACCTCCGATGCAGGGATGACCTGATGAACGTATACAGAGCCAATGCTCACATGTCAAGAAGAGGCAGCGTTAAGATCAGGGACATCATCGGAATTATTAAAATCCTCGGACCCGTCATCCCCCACTTCTTTCAGAGGCGTAACGCCGCCAACAACTTTAATACTTGTGGCAGCATGGGTTATGCTCGTGACCAGGATGACATGGGTTCCCGCTTTGGGTTTGGTATGGCTTCTGGTGATTATGGCAATGGTAGCGGCCACTATGGCCACAGCCATGGTCATGGTCATGGTCATGGGCATTCCCATTCCCATGGTGAATCTCACTACGGGATGAGTATGGGTCATGTTGATGACTATGCTGATCACGAAATTACGGAGGAGGAGTTTGAGAGGCTCCTTGACTACGCGGAGCAGTGCAATGTGAAGATGTACTGA

mRNA sequence

ATGGCTTGCCGTTCAGTGGATAACCTCCGATGCAGGGATGACCTGATGAACGTATACAGAGCCAATGCTCACATGTCAAGAAGAGGCAGCGTTAAGATCAGGGACATCATCGGAATTATTAAAATCCTCGGACCCGTCATCCCCCACTTCTTTCAGAGGCGTAACGCCGCCAACAACTTTAATACTTGTGGCAGCATGGGTTATGCTCGTGACCAGGATGACATGGGTTCCCGCTTTGGGTTTGGTATGGCTTCTGGTGATTATGGCAATGGTAGCGGCCACTATGGCCACAGCCATGGTCATGGTCATGGTCATGGGCATTCCCATTCCCATGGTGAATCTCACTACGGGATGAGTATGGGTCATGTTGATGACTATGCTGATCACGAAATTACGGAGGAGGAGTTTGAGAGGCTCCTTGACTACGCGGAGCAGTGCAATGTGAAGATGTACTGA

Coding sequence (CDS)

ATGGCTTGCCGTTCAGTGGATAACCTCCGATGCAGGGATGACCTGATGAACGTATACAGAGCCAATGCTCACATGTCAAGAAGAGGCAGCGTTAAGATCAGGGACATCATCGGAATTATTAAAATCCTCGGACCCGTCATCCCCCACTTCTTTCAGAGGCGTAACGCCGCCAACAACTTTAATACTTGTGGCAGCATGGGTTATGCTCGTGACCAGGATGACATGGGTTCCCGCTTTGGGTTTGGTATGGCTTCTGGTGATTATGGCAATGGTAGCGGCCACTATGGCCACAGCCATGGTCATGGTCATGGTCATGGGCATTCCCATTCCCATGGTGAATCTCACTACGGGATGAGTATGGGTCATGTTGATGACTATGCTGATCACGAAATTACGGAGGAGGAGTTTGAGAGGCTCCTTGACTACGCGGAGCAGTGCAATGTGAAGATGTACTGA

Protein sequence

MACRSVDNLRCRDDLMNVYRANAHMSRRGSVKIRDIIGIIKILGPVIPHFFQRRNAANNFNTCGSMGYARDQDDMGSRFGFGMASGDYGNGSGHYGHSHGHGHGHGHSHSHGESHYGMSMGHVDDYADHEITEEEFERLLDYAEQCNVKMY

Homology

[Close]

BLAST of Cp4.1LG11g01450.1 vs. TrEMBL
Match: A0A0A0LKW7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359890 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.1e-22
Identity = 79/171 (46.20%), Postives = 100/171 (58.48%), Query Frame = 1


Query: 1   MACRSVDNLRC-RDDLMNVYRANAHMSRRGSVKIRDIIGIIKILGPVIPHFFQRRNAA-- 60
           MA RSV+NL+  +DD+   YR     SRR  +KIRDII +++I+GP+IPHFF   + +  
Sbjct: 1   MAFRSVNNLQFWKDDMRRAYREKVGSSRRRRIKIRDIIDVLEIVGPIIPHFFGSNSLSAG 60

Query: 61  -NNFNTCGSM----GYARDQDDM---------GSRFGFGMASGDYGNGSGHYGHSHGHGH 120
            +N++  G+      Y R  DDM         G RFG  M SGDYGN S HYG   G G+
Sbjct: 61  PDNYSNYGNNHMNGSYGRRDDDMHSFHCGGGGGGRFGLDMGSGDYGNESRHYG---GRGN 120

Query: 121 GHGHSHSHGESHYGMSMGHVDDYADHEITEEEFERLLDYAEQC---NVKMY 152
           G+        S YGM M   +DY D EITEEEFERLLD+AEQ    N +MY
Sbjct: 121 GN--------SQYGMRMALAEDYYDREITEEEFERLLDFAEQSHNNNSRMY 160

[Close]

BLAST of Cp4.1LG11g01450.1 vs. NCBI nr
Match: gi|700207401|gb|KGN62520.1| (hypothetical protein Csa_2G359890 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 3.0e-22
Identity = 79/171 (46.20%), Postives = 100/171 (58.48%), Query Frame = 1


Query: 1   MACRSVDNLRC-RDDLMNVYRANAHMSRRGSVKIRDIIGIIKILGPVIPHFFQRRNAA-- 60
           MA RSV+NL+  +DD+   YR     SRR  +KIRDII +++I+GP+IPHFF   + +  
Sbjct: 1   MAFRSVNNLQFWKDDMRRAYREKVGSSRRRRIKIRDIIDVLEIVGPIIPHFFGSNSLSAG 60

Query: 61  -NNFNTCGSM----GYARDQDDM---------GSRFGFGMASGDYGNGSGHYGHSHGHGH 120
            +N++  G+      Y R  DDM         G RFG  M SGDYGN S HYG   G G+
Sbjct: 61  PDNYSNYGNNHMNGSYGRRDDDMHSFHCGGGGGGRFGLDMGSGDYGNESRHYG---GRGN 120

Query: 121 GHGHSHSHGESHYGMSMGHVDDYADHEITEEEFERLLDYAEQC---NVKMY 152
           G+        S YGM M   +DY D EITEEEFERLLD+AEQ    N +MY
Sbjct: 121 GN--------SQYGMRMALAEDYYDREITEEEFERLLDFAEQSHNNNSRMY 160

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g01450.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g01450.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKW7_CUCSA	2.1e-22	46.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359890 PE=4 SV=1	[more]

BLAST of Cp4.1LG11g01450.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g01450.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700207401\|gb\|KGN62520.1\|	3.0e-22	46.20	hypothetical protein Csa_2G359890 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG11g01450	Cp4.1LG11g01450	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG11g01450.1:cds:001	Cp4.1LG11g01450.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG11g01450.1	Cp4.1LG11g01450.1-protein	polypeptide