Cp4.1LG11g01450 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG11g01450
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG11 : 881082 .. 881537 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTGCCGTTCAGTGGATAACCTCCGATGCAGGGATGACCTGATGAACGTATACAGAGCCAATGCTCACATGTCAAGAAGAGGCAGCGTTAAGATCAGGGACATCATCGGAATTATTAAAATCCTCGGACCCGTCATCCCCCACTTCTTTCAGAGGCGTAACGCCGCCAACAACTTTAATACTTGTGGCAGCATGGGTTATGCTCGTGACCAGGATGACATGGGTTCCCGCTTTGGGTTTGGTATGGCTTCTGGTGATTATGGCAATGGTAGCGGCCACTATGGCCACAGCCATGGTCATGGTCATGGTCATGGGCATTCCCATTCCCATGGTGAATCTCACTACGGGATGAGTATGGGTCATGTTGATGACTATGCTGATCACGAAATTACGGAGGAGGAGTTTGAGAGGCTCCTTGACTACGCGGAGCAGTGCAATGTGAAGATGTACTGA

mRNA sequence

ATGGCTTGCCGTTCAGTGGATAACCTCCGATGCAGGGATGACCTGATGAACGTATACAGAGCCAATGCTCACATGTCAAGAAGAGGCAGCGTTAAGATCAGGGACATCATCGGAATTATTAAAATCCTCGGACCCGTCATCCCCCACTTCTTTCAGAGGCGTAACGCCGCCAACAACTTTAATACTTGTGGCAGCATGGGTTATGCTCGTGACCAGGATGACATGGGTTCCCGCTTTGGGTTTGGTATGGCTTCTGGTGATTATGGCAATGGTAGCGGCCACTATGGCCACAGCCATGGTCATGGTCATGGTCATGGGCATTCCCATTCCCATGGTGAATCTCACTACGGGATGAGTATGGGTCATGTTGATGACTATGCTGATCACGAAATTACGGAGGAGGAGTTTGAGAGGCTCCTTGACTACGCGGAGCAGTGCAATGTGAAGATGTACTGA

Coding sequence (CDS)

ATGGCTTGCCGTTCAGTGGATAACCTCCGATGCAGGGATGACCTGATGAACGTATACAGAGCCAATGCTCACATGTCAAGAAGAGGCAGCGTTAAGATCAGGGACATCATCGGAATTATTAAAATCCTCGGACCCGTCATCCCCCACTTCTTTCAGAGGCGTAACGCCGCCAACAACTTTAATACTTGTGGCAGCATGGGTTATGCTCGTGACCAGGATGACATGGGTTCCCGCTTTGGGTTTGGTATGGCTTCTGGTGATTATGGCAATGGTAGCGGCCACTATGGCCACAGCCATGGTCATGGTCATGGTCATGGGCATTCCCATTCCCATGGTGAATCTCACTACGGGATGAGTATGGGTCATGTTGATGACTATGCTGATCACGAAATTACGGAGGAGGAGTTTGAGAGGCTCCTTGACTACGCGGAGCAGTGCAATGTGAAGATGTACTGA

Protein sequence

MACRSVDNLRCRDDLMNVYRANAHMSRRGSVKIRDIIGIIKILGPVIPHFFQRRNAANNFNTCGSMGYARDQDDMGSRFGFGMASGDYGNGSGHYGHSHGHGHGHGHSHSHGESHYGMSMGHVDDYADHEITEEEFERLLDYAEQCNVKMY
Homology
[Close]
BLAST of Cp4.1LG11g01450 vs. TrEMBL
Match: A0A0A0LKW7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359890 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.1e-22
Identity = 79/171 (46.20%), Postives = 100/171 (58.48%), Query Frame = 1 

Query: 1   MACRSVDNLRC-RDDLMNVYRANAHMSRRGSVKIRDIIGIIKILGPVIPHFFQRRNAA-- 60
           MA RSV+NL+  +DD+   YR     SRR  +KIRDII +++I+GP+IPHFF   + +  
Sbjct: 1   MAFRSVNNLQFWKDDMRRAYREKVGSSRRRRIKIRDIIDVLEIVGPIIPHFFGSNSLSAG 60

Query: 61  -NNFNTCGSM----GYARDQDDM---------GSRFGFGMASGDYGNGSGHYGHSHGHGH 120
            +N++  G+      Y R  DDM         G RFG  M SGDYGN S HYG   G G+
Sbjct: 61  PDNYSNYGNNHMNGSYGRRDDDMHSFHCGGGGGGRFGLDMGSGDYGNESRHYG---GRGN 120

Query: 121 GHGHSHSHGESHYGMSMGHVDDYADHEITEEEFERLLDYAEQC---NVKMY 152
           G+        S YGM M   +DY D EITEEEFERLLD+AEQ    N +MY
Sbjct: 121 GN--------SQYGMRMALAEDYYDREITEEEFERLLDFAEQSHNNNSRMY 160

[Close]
BLAST of Cp4.1LG11g01450 vs. NCBI nr
Match: gi|700207401|gb|KGN62520.1| (hypothetical protein Csa_2G359890 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 3.0e-22
Identity = 79/171 (46.20%), Postives = 100/171 (58.48%), Query Frame = 1 

Query: 1   MACRSVDNLRC-RDDLMNVYRANAHMSRRGSVKIRDIIGIIKILGPVIPHFFQRRNAA-- 60
           MA RSV+NL+  +DD+   YR     SRR  +KIRDII +++I+GP+IPHFF   + +  
Sbjct: 1   MAFRSVNNLQFWKDDMRRAYREKVGSSRRRRIKIRDIIDVLEIVGPIIPHFFGSNSLSAG 60

Query: 61  -NNFNTCGSM----GYARDQDDM---------GSRFGFGMASGDYGNGSGHYGHSHGHGH 120
            +N++  G+      Y R  DDM         G RFG  M SGDYGN S HYG   G G+
Sbjct: 61  PDNYSNYGNNHMNGSYGRRDDDMHSFHCGGGGGGRFGLDMGSGDYGNESRHYG---GRGN 120

Query: 121 GHGHSHSHGESHYGMSMGHVDDYADHEITEEEFERLLDYAEQC---NVKMY 152
           G+        S YGM M   +DY D EITEEEFERLLD+AEQ    N +MY
Sbjct: 121 GN--------SQYGMRMALAEDYYDREITEEEFERLLDFAEQSHNNNSRMY 160

The following BLAST results are available for this feature:
BLAST of Cp4.1LG11g01450 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG11g01450 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKW7_CUCSA2.1e-2246.20Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359890 PE=4 SV=1[more]
BLAST of Cp4.1LG11g01450 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG11g01450 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207401|gb|KGN62520.1|3.0e-2246.20hypothetical protein Csa_2G359890 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g01450.1Cp4.1LG11g01450.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG11g01450Csa2G359890Cucumber (Chinese Long) v2cpecuB096
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG11g01450Wax gourdcpewgoB0141
Cp4.1LG11g01450Wax gourdcpewgoB0150
Cp4.1LG11g01450Wax gourdcpewgoB0157
Cp4.1LG11g01450Cucurbita pepo (Zucchini)cpecpeB062
Cp4.1LG11g01450Cucurbita pepo (Zucchini)cpecpeB125
Cp4.1LG11g01450Cucurbita pepo (Zucchini)cpecpeB136
Cp4.1LG11g01450Cucurbita pepo (Zucchini)cpecpeB146
Cp4.1LG11g01450Cucumber (Gy14) v1cgycpeB0611
Cp4.1LG11g01450Cucurbita maxima (Rimu)cmacpeB030
Cp4.1LG11g01450Cucurbita maxima (Rimu)cmacpeB179
Cp4.1LG11g01450Cucurbita maxima (Rimu)cmacpeB460
Cp4.1LG11g01450Cucurbita maxima (Rimu)cmacpeB766
Cp4.1LG11g01450Cucurbita moschata (Rifu)cmocpeB006
Cp4.1LG11g01450Cucurbita moschata (Rifu)cmocpeB154
Cp4.1LG11g01450Cucurbita moschata (Rifu)cmocpeB420
Cp4.1LG11g01450Cucurbita moschata (Rifu)cmocpeB720
Cp4.1LG11g01450Cucurbita moschata (Rifu)cmocpeB809
Cp4.1LG11g01450Wild cucumber (PI 183967)cpecpiB092
Cp4.1LG11g01450Wild cucumber (PI 183967)cpecpiB112
Cp4.1LG11g01450Cucumber (Chinese Long) v2cpecuB116
Cp4.1LG11g01450Bottle gourd (USVL1VR-Ls)cpelsiB085
Cp4.1LG11g01450Bottle gourd (USVL1VR-Ls)cpelsiB100
Cp4.1LG11g01450Watermelon (Charleston Gray)cpewcgB113
Cp4.1LG11g01450Watermelon (Charleston Gray)cpewcgB125
Cp4.1LG11g01450Watermelon (97103) v1cpewmB101
Cp4.1LG11g01450Watermelon (97103) v1cpewmB108
Cp4.1LG11g01450Melon (DHL92) v3.5.1cpemeB091
Cp4.1LG11g01450Melon (DHL92) v3.5.1cpemeB107
Cp4.1LG11g01450Cucumber (Gy14) v2cgybcpeB161
Cp4.1LG11g01450Cucumber (Gy14) v2cgybcpeB478
Cp4.1LG11g01450Cucumber (Gy14) v2cgybcpeB719
Cp4.1LG11g01450Melon (DHL92) v3.6.1cpemedB115
Cp4.1LG11g01450Melon (DHL92) v3.6.1cpemedB132
Cp4.1LG11g01450Melon (DHL92) v3.6.1cpemedB135
Cp4.1LG11g01450Silver-seed gourdcarcpeB0152
Cp4.1LG11g01450Silver-seed gourdcarcpeB0263
Cp4.1LG11g01450Silver-seed gourdcarcpeB0556
Cp4.1LG11g01450Silver-seed gourdcarcpeB1078
Cp4.1LG11g01450Cucumber (Chinese Long) v3cpecucB0106
Cp4.1LG11g01450Cucumber (Chinese Long) v3cpecucB0127
Cp4.1LG11g01450Cucumber (Chinese Long) v3cpecucB0136