Cp4.1LG10g12270.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG10g12270.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionComplex 1 LYR-like protein
LocationCp4.1LG10 : 9219561 .. 9224058 (-)
Sequence length2491
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCTGCATTCATATTCGAAGTGGATCCGTGCTTGTGTATTCGAAACCATTCCAATCGGATTTCCTCAGAATTAGGGCTTCAGGGTCGAATCGCGAGTCTCGTTGCGTTCTCTTCAAGGTCAGTGTAGCCGCTTCTTGATTGAAAGTTGCAGATTCTTCTTAATTTGGCACCATTGATTAAGCATTTTTCAATTCTATACTTCCTGTGATGATTTTCTCTTGGCTTTGCATATTTTTGGATACAAATTTGCCAATTTTTCTTCAAGTACTTACATTTGTGCTGTCTGTTTACTCCGTTCTTAGAATCAGGGCTTCCTTTCTTTCTGTTTTTAGTGGCAATGAAGTTCTTGAATAAATCTTCACTCAACCGTCGTATTTCCAGAAACCAAATCAAATCGATTATTCGAATCAAGGAGGTTCAGTTTGGCTAATTTCTCTGGCCATTTCAAATTAAACCAAACTAATTCAAGATGGTTCTGTTACCAGTCATATGATATGATATTGTTCAGTCGGCCAATATAATTACGAATGAAATTCATTTTTGGTGACTGTATATTTATTTATTGTATTGATCCATTTTTAACTGCATAGGTGTTTCTTCTCAAATCTCATTACAGCTCTATTGTATCTGCCGCCACCATTGCCATGAAGTTCTCAAATCTATTATGTTATTAGTCAATATTTTCTGGGCAGAGCACATAGTGAAATCGTAGACTTTTTGAGTGACAAGAAGAGGCCCTTGAAGACTTTTTAAGTTGGAAATGAATTCAGAAGCCTCGCAGGTAGCTAAGGTTTACCGCCAGCTTCTCAAAGCTGTAAAGAACCATATTGGAAAGGAAGAGAACAAGAAGCATTTTGTGGACTATGTGGCTCAGAAGTTCAGGGAGACAAGCACAGTTTCGAAACCCCATTCTGTTCAACAGAAAATCAAGCTTGCTCGCGATTACACATTTCTACTTAACAGCGTGCACCATCAAAAGGCAATACTTCACTTCCACTATTTAAAACTTTTTTCTTGTTCGAATAAAGAATTAGGCCTTGATAACCATTGTTGTATTTTTCATAGTTTCTTTAGAATGAATTTCATCTTTTATAACTTATAAGGGAACCTTCAGATTCTTAGTCGAATTTCAAAAACAATTTTTTTTCGAACTTGGCTTGAATTTCAGAAACATTCAACCCTTTGGCTATAGGTGGAAGTAGTGTTGCCTAGTGGGGCCTCAGTAATCTTTTGTTTGGTTATGTGATTCATTCACTATAATTTTCTTTTACAATGTAGATTAATTTGTAGTCCATTGAGGATTTGACAAATGAGGACTTGTTAATGGTTCATTAATCTAAGTACGACGTATAATATAGATACTGTTTCATTAGGTGGTTTATCAATCAATTTGTAGATCTTCAATGCAAGATTTGATGGGGAAAATAGCTACTTCTTACGTTCTACTATCTGCAATTACAGAGTAATGAGATATTCAAATTCTAGCAGAAGACAAATTATAGCTCAGAATCAAGAATAAATGAACTTCTGCTTCGTTTCCTCATTTGATGTTTGTTAATAATTGTAATTTTTATTGGTTATGTATGTTCAGGACTTGCTGTTCTCGTACAACATTGCTGTTGATAGATCAGATGAAATGAAGCGGATATTGGGCAAGTCTGCAGCAAGTGTGGGGCTTAAACTTCCGGAGGTTTATCAACCCTGACGCCCTGTGGTTGTTTTATTAAGCAGAATTACTTTGTTCCTCCTAAGAAAAGAAGAATAATGACTTCGATGAGCTGCCTCTGTACCAGCAGACTTTAATATTGTTGATCTTCTACCATCTGATACTTCAGTTTTATGTGCATTGGAAGAAGCAAAGTTCAGCTACGAAGGTTTTATCTTTCCTCTTATTACAACTTCTGAGGGTGAGTTTGACAGCAATCTGGTGAGTTATTTGTTTCATTTCCATATAATATGTACTTCAATAACGTGAAAAAGAGCCGTTGAATTTTGATCAAGAGGCACTTTGACTTAGTTGGATCTTAGTTGTAGGTGTTTTCATCGCAATATAATCAACCAACCGTTTGAAGTTATGTGTTTACTCATTTTCACTTTGACCAACTTCTTGATCAATTATTTTGCTCATCATCCAAGCCCCCCATATAGAATTTCTGAGTAATTGGAAGTCGCTTTAGATGATGAGGCCATAGGAACGGGTGCATCATGACATCGTAAGATATTTTGTCTTAATGAATTAATTGGTACTAGAAATGCTGGAACAGTCGATGACTGCTTAGTCTCATTCGAGAGTCTATTCTCTTTGTATTATATTTTCCGAGGGGGTGGATTTGGGCTCCTTCCCGTCCATTGTATAATTGCGCAGGAAGGTATCACGTGCCTTTTGTCTCATGCATCTAACCTGCTTACGGGTTCACCTGTTTTAGTCATTTATGAAGTATTAGAATTGCAAAATAGGCATTGCCTTTGGTTTCATACTCTATCTACAAATACGAGAATATCCCATTTTAGGTCTAAGTAACATATAATTGAAGGAGATGGAAGACCTCCAATGTCAACTGTCAAATGTTTTCATTTCTATAATTGATTTAGACATTTCTGTATAGATAACAAATCTATTTATAACTGTTCTCTTACAACAGAGAGATTTAATGGTGGTTCAATAATTACGGGATAGAATTGAATTTCCCACGTTTGTGGAAGGATTACTATTTGAGGACTAATTTCCCAGGCATTCAACGGCATGTGCTTGTGCCTCACATTGAGCTCTATATATCCCTTCCCCACTGCACTCCATGCCTTTACCTTACTAGCTTATTTCTGATGGCTTTGAACGACACTTTCTATGTATCCCATGGATCCCCAACGCTAACCATCGACGATGGCATCGAAGCAAGGCACTTCTTCAAATCATGGAAGGACAAGGTTTTTCCCCAAACACCCAAAGCCATTCTTTTTGTCTCTGCCCATTTCGACACCGCCTATCCCACCGTCAACGTCGTTTCTGGCCCCAACGACACCATCTACGACTTCTATGGTTTCCCCTCCTCCATGTACGAGGTAACATACTAAACCTAGCAAGTGTATGTTAGGAACCACGACTTTTCACAATAGTATGATATTATATTGTTCACTTTGAGCATAAGTTCTCATTATTTTGCTTTTGGTTCCCCCAAAAGATCTCGTACCAATAGAGATGAATTCCTTACTTATAAACTCATGATCAACCCTTTAATTAGCCGATGTGCCGATGTGGGACACCTCTTACAACAATTCTCAACCGTTTAGGCATTTATATATTTTCAAGCTTTGAACACTTTGAGAGAAACTTTCCAATATTGATAACAATAATGCATAAATGATGTGAAAAACAGTTAAAATATCCAGCACCAGGAGCTCCGGCATTGGCGAAGAGGGTGAAGGAAGCTCTGATGGGGGCCGGGTTCGAGCGGGTGGACGAGGAGAAAGGGCGAGGGCTGGATCATGGAGCATGGGTTCCTCTGATGTTCATGTATCCAGAGGCAGACATCCCAGTTTGCCAACTTTCAGTACAATCACGCCTAAATGGGACACACCATTACAACATGGGCAAGGCATTGGCCCCTCTTAAGGATGAAGGGGTTCTCATTGTTGGGTCAGGAAGTGCCACACACAACCTTAGGACACTCGACCGCCACGCCAGGTCTTCTGTCAACGCCTCATGGGCCATCGAATTTGACGATTGGCTTAAACATGCTCTCCTTCAAGGAAGGTAATTTCACTTATAATCAAATAAATTAAAAGATATATAATAAATAGAAAGATACTTATAAAAGATATTTGTCTATAATTGTAATATCCCACATAAGTTGGGAGGAGAATGAAACACCGTGGTGTACAAAGTGTGTACAAAATCTCTCTCTAGCAGACGCGTTTTAAAGTCTTGAAGAGAAATCCGAAAGGAAAACTCCAAAGAAGACAATATCTGTGCGGTGGGGTTGGGCTTGGATCGTTACAATAATAAAATATCAATATGATATATATGGTAAGCTATAATTCAATATTAAATATTCATAACCTCTTGTTGGAGTAGACATCTCTCACTTATTCTTTGCTCATTTAGCTTAAATAAATATTTTTTGTTTGAGAATTAGAAGAATATTTCGTGTGGTAGATACGAAGATGTGAACGAGTACAAAAAGAAGGCTCCAAATGCAGAAAAGGCACATCCAAGTCCCGACCACCTATTTCCGCTCCATGTCGCGATCGGGGCAGCCGGAGGCCACCCCAAAACGAAGCTAGTCCACCATAGCTGGGACCTTGGCACCATGTCCTACGCCTCCTACCAGTTCACAGCCTCTTAAACCCTAAACCCACTAATCGCATCAACATTACAAACCTCCAACTCTTCTAGTTGCCTTGTATCTTTGTTAATATAATGGAGTATGTTTGTAAAATGATCCTATTTATTTCTGTGACAAACCATATAATTTGGTTTTGGTTTATTACAACGTTGTAT

mRNA sequence

ACCTGCATTCATATTCGAAGTGGATCCGTGCTTGTGTATTCGAAACCATTCCAATCGGATTTCCTCAGAATTAGGGCTTCAGGGTCGAATCGCGAGTCTCGTTGCGTTCTCTTCAAGGTAGCTAAGGTTTACCGCCAGCTTCTCAAAGCTGTAAAGAACCATATTGGAAAGGAAGAGAACAAGAAGCATTTTGTGGACTATGTGGCTCAGAAGTTCAGGGAGACAAGCACAGTTTCGAAACCCCATTCTGTTCAACAGAAAATCAAGCTTGCTCGCGATTACACATTTCTACTTAACAGCGACTTGCTGTTCTCGTACAACATTGCTGTTGATAGATCAGATGAAATGAAGCGGATATTGGGCAAGTCTGCAGCAAGTGTGGGGCTTAAACTTCCGGAGGTTTATCAACCCTGACGCCCTGTGGTTGTTTTATTAAGCAGAATTACTTTGTTCCTCCTAAGAAAAGAAGAATAATGACTTCGATGAGCTGCCTCTGTACCAGCAGACTTTAATATTGTTGATCTTCTACCATCTGATACTTCAGTTTTATGTGCATTGGAAGAAGCAAAGTTCAGCTACGAAGGTTTTATCTTTCCTCTTATTACAACTTCTGAGGGTGAGTTTGACAGCAATCTGGTGAGTTATTTGTTTCATTTCCATATAATATGTACTTCAATAACGTGAAAAAGAGCCGTTGAATTTTGATCAAGAGGCACTTTGACTTAGTTGGATCTTAGTTGTAGGTGTTTTCATCGCAATATAATCAACCAACCGTTTGAAGTTATGTGTTTACTCATTTTCACTTTGACCAACTTCTTGATCAATTATTTTGCTCATCATCCAAGCCCCCCATATAGAATTTCTGAGTAATTGGAAGTCGCTTTAGATGATGAGGCCATAGGAACGGGTGCATCATGACATCGTAAGATATTTTGTCTTAATGAATTAATTGGTACTAGAAATGCTGGAACAGTCGATGACTGCTTAGTCTCATTCGAGAGTCTATTCTCTTTGTATTATATTTTCCGAGGGGGTGGATTTGGGCTCCTTCCCGTCCATTGTATAATTGCGCAGGAAGGTATCACGTGCCTTTTGTCTCATGCATCTAACCTGCTTACGGGTTCACCTGTTTTAGTCATTTATGAAGTATTAGAATTGCAAAATAGGCATTGCCTTTGGTTTCATACTCTATCTACAAATACGAGAATATCCCATTTTAGGTCTAAGTAACATATAATTGAAGGAGATGGAAGACCTCCAATGTCAACTGTCAAATGTTTTCATTTCTATAATTGATTTAGACATTTCTGTATAGATAACAAATCTATTTATAACTGTTCTCTTACAACAGAGAGATTTAATGGTGGTTCAATAATTACGGGATAGAATTGAATTTCCCACGTTTGTGGAAGGATTACTATTTGAGGACTAATTTCCCAGGCATTCAACGGCATGTGCTTGTGCCTCACATTGAGCTCTATATATCCCTTCCCCACTGCACTCCATGCCTTTACCTTACTAGCTTATTTCTGATGGCTTTGAACGACACTTTCTATGTATCCCATGGATCCCCAACGCTAACCATCGACGATGGCATCGAAGCAAGGCACTTCTTCAAATCATGGAAGGACAAGGTTTTTCCCCAAACACCCAAAGCCATTCTTTTTGTCTCTGCCCATTTCGACACCGCCTATCCCACCGTCAACGTCGTTTCTGGCCCCAACGACACCATCTACGACTTCTATGGTTTCCCCTCCTCCATGTACGAGTTAAAATATCCAGCACCAGGAGCTCCGGCATTGGCGAAGAGGGTGAAGGAAGCTCTGATGGGGGCCGGGTTCGAGCGGGTGGACGAGGAGAAAGGGCGAGGGCTGGATCATGGAGCATGGGTTCCTCTGATGTTCATGTATCCAGAGGCAGACATCCCAGTTTGCCAACTTTCAGTACAATCACGCCTAAATGGGACACACCATTACAACATGGGCAAGGCATTGGCCCCTCTTAAGGATGAAGGGGTTCTCATTGTTGGGTCAGGAAGTGCCACACACAACCTTAGGACACTCGACCGCCACGCCAGGTCTTCTGTCAACGCCTCATGGGCCATCGAATTTGACGATTGGCTTAAACATGCTCTCCTTCAAGGAAGATACGAAGATGTGAACGAGTACAAAAAGAAGGCTCCAAATGCAGAAAAGGCACATCCAAGTCCCGACCACCTATTTCCGCTCCATGTCGCGATCGGGGCAGCCGGAGGCCACCCCAAAACGAAGCTAGTCCACCATAGCTGGGACCTTGGCACCATGTCCTACGCCTCCTACCAGTTCACAGCCTCTTAAACCCTAAACCCACTAATCGCATCAACATTACAAACCTCCAACTCTTCTAGTTGCCTTGTATCTTTGTTAATATAATGGAGTATGTTTGTAAAATGATCCTATTTATTTCTGTGACAAACCATATAATTTGGTTTTGGTTTATTACAACGTTGTAT

Coding sequence (CDS)

ACCTGCATTCATATTCGAAGTGGATCCGTGCTTGTGTATTCGAAACCATTCCAATCGGATTTCCTCAGAATTAGGGCTTCAGGGTCGAATCGCGAGTCTCGTTGCGTTCTCTTCAAGGTAGCTAAGGTTTACCGCCAGCTTCTCAAAGCTGTAAAGAACCATATTGGAAAGGAAGAGAACAAGAAGCATTTTGTGGACTATGTGGCTCAGAAGTTCAGGGAGACAAGCACAGTTTCGAAACCCCATTCTGTTCAACAGAAAATCAAGCTTGCTCGCGATTACACATTTCTACTTAACAGCGACTTGCTGTTCTCGTACAACATTGCTGTTGATAGATCAGATGAAATGAAGCGGATATTGGGCAAGTCTGCAGCAAGTGTGGGGCTTAAACTTCCGGAGGTTTATCAACCCTGA

Protein sequence

TCIHIRSGSVLVYSKPFQSDFLRIRASGSNRESRCVLFKVAKVYRQLLKAVKNHIGKEENKKHFVDYVAQKFRETSTVSKPHSVQQKIKLARDYTFLLNSDLLFSYNIAVDRSDEMKRILGKSAASVGLKLPEVYQP
Homology
[Close]
BLAST of Cp4.1LG10g12270.1 vs. TrEMBL
Match: A0A0A0L9E2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G645910 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 9.9e-40
Identity = 87/104 (83.65%), Postives = 95/104 (91.35%), Query Frame = 1 

Query: 39  KVAKVYRQLLKAVKNHIGKEENKKHFVDYVAQKFRETSTVSKPHSVQQKIKLARDYTFLL 98
           +VAKVYRQLLKAVK H+GKEE+KKHFVDYVAQKFR+ S +SKPHS+QQ+IKLARDYTFLL
Sbjct: 7   QVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLARDYTFLL 66

Query: 99  NS-----DLLFSYNIAVDRSDEMKRILGKSAASVGLKLPEVYQP 138
           NS     DLLFSYNIAVDRSDEMKR+LGKSAASVGL LPEVYQP
Sbjct: 67  NSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP 110

[Close]
BLAST of Cp4.1LG10g12270.1 vs. TrEMBL
Match: V4TI91_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033129mg PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.6e-35
Identity = 80/106 (75.47%), Postives = 91/106 (85.85%), Query Frame = 1 

Query: 37  LFKVAKVYRQLLKAVKNHIGKEENKKHFVDYVAQKFRETSTVSKPHSVQQKIKLARDYTF 96
           + + AKVYRQLLKAVKNHIGKE+ K HF++YV Q+FR+ S +S P S++QKIKLA DYTF
Sbjct: 5   IMQAAKVYRQLLKAVKNHIGKEDYKMHFMEYVMQEFRKNSKLSDPSSIRQKIKLAHDYTF 64

Query: 97  LLNS-----DLLFSYNIAVDRSDEMKRILGKSAASVGLKLPEVYQP 138
           LLNS     DLLFSYNIAVDRSDEMKRILGKSAASVGL+LPEVYQP
Sbjct: 65  LLNSVHHHKDLLFSYNIAVDRSDEMKRILGKSAASVGLQLPEVYQP 110

[Close]
BLAST of Cp4.1LG10g12270.1 vs. TrEMBL
Match: A0A067DNY7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033847mg PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.6e-35
Identity = 80/106 (75.47%), Postives = 91/106 (85.85%), Query Frame = 1 

Query: 37  LFKVAKVYRQLLKAVKNHIGKEENKKHFVDYVAQKFRETSTVSKPHSVQQKIKLARDYTF 96
           + + AKVYRQLLKAVKNHIGKE+ K HF++YV Q+FR+ S +S P S++QKIKLA DYTF
Sbjct: 5   IMQAAKVYRQLLKAVKNHIGKEDYKMHFMEYVMQEFRKNSKLSDPSSIRQKIKLAHDYTF 64

Query: 97  LLNS-----DLLFSYNIAVDRSDEMKRILGKSAASVGLKLPEVYQP 138
           LLNS     DLLFSYNIAVDRSDEMKRILGKSAASVGL+LPEVYQP
Sbjct: 65  LLNSVHHHKDLLFSYNIAVDRSDEMKRILGKSAASVGLQLPEVYQP 110

[Close]
BLAST of Cp4.1LG10g12270.1 vs. TrEMBL
Match: A0A059BGX6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02800 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 4.0e-33
Identity = 74/104 (71.15%), Postives = 88/104 (84.62%), Query Frame = 1 

Query: 39  KVAKVYRQLLKAVKNHIGKEENKKHFVDYVAQKFRETSTVSKPHSVQQKIKLARDYTFLL 98
           + AKVYR LLKAVK HIGKEE KKHF +YV ++FR+   +S P S+QQKIKLA+DYT+LL
Sbjct: 7   QAAKVYRHLLKAVKRHIGKEETKKHFAEYVTEEFRKNCVLSDPSSIQQKIKLAKDYTYLL 66

Query: 99  NS-----DLLFSYNIAVDRSDEMKRILGKSAASVGLKLPEVYQP 138
           NS     DLLFSYNIAVDR++EMKR+LGKSA+SVGL+LPEVYQP
Sbjct: 67  NSVHHHMDLLFSYNIAVDRTEEMKRVLGKSASSVGLRLPEVYQP 110

[Close]
BLAST of Cp4.1LG10g12270.1 vs. TrEMBL
Match: A0A0B0PPW3_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_03738 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 6.9e-33
Identity = 78/101 (77.23%), Postives = 85/101 (84.16%), Query Frame = 1 

Query: 42  KVYRQLLKAVKNHIGKEENKKHFVDYVAQKFRETSTVSKPHSVQQKIKLARDYTFLLNS- 101
           KVYR LLKAVKNHIGKEE KKHF  Y+A++FR+ S +S P  V Q+IKLA DYT+LLNS 
Sbjct: 11  KVYRVLLKAVKNHIGKEEYKKHFSQYIAEQFRKNSQLSDPSLVAQRIKLANDYTYLLNSV 70

Query: 102 ----DLLFSYNIAVDRSDEMKRILGKSAASVGLKLPEVYQP 138
               DLLFSYNIAVDRSDEMKRILGKSAASVGLKLPEVYQP
Sbjct: 71  HHHKDLLFSYNIAVDRSDEMKRILGKSAASVGLKLPEVYQP 111

[Close]
BLAST of Cp4.1LG10g12270.1 vs. TAIR10
Match: AT5G51960.1 (AT5G51960.1 Complex 1 LYR protein (InterPro:IPR008011))

HSP 1 Score: 122.1 bits (305), Expect = 2.7e-28
Identity = 63/102 (61.76%), Postives = 80/102 (78.43%), Query Frame = 1 

Query: 41  AKVYRQLLKAVKNHIGKEENKKHFVDYVAQKFRETSTVSKPHSVQQKIKLARDYTFLLNS 100
           A+VYR LLKAV  H+GKE++K HF+D+V Q+FR+ +         +KI LAR+YT+LLNS
Sbjct: 9   ARVYRDLLKAVVKHVGKEDHKSHFLDFVKQEFRKNAN-------SEKINLARNYTYLLNS 68

Query: 101 -----DLLFSYNIAVDRSDEMKRILGKSAASVGLKLPEVYQP 138
                DLLFSYNIAVDR++EMKR+L KSAASVGL+LPEVY+P
Sbjct: 69  IHSHKDLLFSYNIAVDRTEEMKRVLNKSAASVGLRLPEVYEP 103

[Close]
BLAST of Cp4.1LG10g12270.1 vs. NCBI nr
Match: gi|449453377|ref|XP_004144434.1| (PREDICTED: uncharacterized protein LOC101204721 [Cucumis sativus])

HSP 1 Score: 171.0 bits (432), Expect = 1.4e-39
Identity = 87/104 (83.65%), Postives = 95/104 (91.35%), Query Frame = 1 

Query: 39  KVAKVYRQLLKAVKNHIGKEENKKHFVDYVAQKFRETSTVSKPHSVQQKIKLARDYTFLL 98
           +VAKVYRQLLKAVK H+GKEE+KKHFVDYVAQKFR+ S +SKPHS+QQ+IKLARDYTFLL
Sbjct: 7   QVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLARDYTFLL 66

Query: 99  NS-----DLLFSYNIAVDRSDEMKRILGKSAASVGLKLPEVYQP 138
           NS     DLLFSYNIAVDRSDEMKR+LGKSAASVGL LPEVYQP
Sbjct: 67  NSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP 110

[Close]
BLAST of Cp4.1LG10g12270.1 vs. NCBI nr
Match: gi|567887378|ref|XP_006436211.1| (hypothetical protein CICLE_v10033129mg [Citrus clementina])

HSP 1 Score: 155.2 bits (391), Expect = 8.1e-35
Identity = 80/106 (75.47%), Postives = 91/106 (85.85%), Query Frame = 1 

Query: 37  LFKVAKVYRQLLKAVKNHIGKEENKKHFVDYVAQKFRETSTVSKPHSVQQKIKLARDYTF 96
           + + AKVYRQLLKAVKNHIGKE+ K HF++YV Q+FR+ S +S P S++QKIKLA DYTF
Sbjct: 5   IMQAAKVYRQLLKAVKNHIGKEDYKMHFMEYVMQEFRKNSKLSDPSSIRQKIKLAHDYTF 64

Query: 97  LLNS-----DLLFSYNIAVDRSDEMKRILGKSAASVGLKLPEVYQP 138
           LLNS     DLLFSYNIAVDRSDEMKRILGKSAASVGL+LPEVYQP
Sbjct: 65  LLNSVHHHKDLLFSYNIAVDRSDEMKRILGKSAASVGLQLPEVYQP 110

[Close]
BLAST of Cp4.1LG10g12270.1 vs. NCBI nr
Match: gi|702423380|ref|XP_010067265.1| (PREDICTED: uncharacterized protein LOC104454186 [Eucalyptus grandis])

HSP 1 Score: 149.1 bits (375), Expect = 5.8e-33
Identity = 74/104 (71.15%), Postives = 88/104 (84.62%), Query Frame = 1 

Query: 39  KVAKVYRQLLKAVKNHIGKEENKKHFVDYVAQKFRETSTVSKPHSVQQKIKLARDYTFLL 98
           + AKVYR LLKAVK HIGKEE KKHF +YV ++FR+   +S P S+QQKIKLA+DYT+LL
Sbjct: 7   QAAKVYRHLLKAVKRHIGKEETKKHFAEYVTEEFRKNCVLSDPSSIQQKIKLAKDYTYLL 66

Query: 99  NS-----DLLFSYNIAVDRSDEMKRILGKSAASVGLKLPEVYQP 138
           NS     DLLFSYNIAVDR++EMKR+LGKSA+SVGL+LPEVYQP
Sbjct: 67  NSVHHHMDLLFSYNIAVDRTEEMKRVLGKSASSVGLRLPEVYQP 110

[Close]
BLAST of Cp4.1LG10g12270.1 vs. NCBI nr
Match: gi|728847424|gb|KHG26867.1| (Uncharacterized protein F383_03738 [Gossypium arboreum])

HSP 1 Score: 148.3 bits (373), Expect = 9.9e-33
Identity = 78/101 (77.23%), Postives = 85/101 (84.16%), Query Frame = 1 

Query: 42  KVYRQLLKAVKNHIGKEENKKHFVDYVAQKFRETSTVSKPHSVQQKIKLARDYTFLLNS- 101
           KVYR LLKAVKNHIGKEE KKHF  Y+A++FR+ S +S P  V Q+IKLA DYT+LLNS 
Sbjct: 11  KVYRVLLKAVKNHIGKEEYKKHFSQYIAEQFRKNSQLSDPSLVAQRIKLANDYTYLLNSV 70

Query: 102 ----DLLFSYNIAVDRSDEMKRILGKSAASVGLKLPEVYQP 138
               DLLFSYNIAVDRSDEMKRILGKSAASVGLKLPEVYQP
Sbjct: 71  HHHKDLLFSYNIAVDRSDEMKRILGKSAASVGLKLPEVYQP 111

[Close]
BLAST of Cp4.1LG10g12270.1 vs. NCBI nr
Match: gi|823133946|ref|XP_012466810.1| (PREDICTED: uncharacterized protein LOC105785311 isoform X2 [Gossypium raimondii])

HSP 1 Score: 147.5 bits (371), Expect = 1.7e-32
Identity = 77/101 (76.24%), Postives = 85/101 (84.16%), Query Frame = 1 

Query: 42  KVYRQLLKAVKNHIGKEENKKHFVDYVAQKFRETSTVSKPHSVQQKIKLARDYTFLLNS- 101
           KVYR LLKAVKNHIGKEE KKHF  Y+A++FR+ S +S P  V Q+IKLA DYT+LLNS 
Sbjct: 11  KVYRVLLKAVKNHIGKEEYKKHFSQYIAEQFRKNSQLSDPSLVAQRIKLANDYTYLLNSV 70

Query: 102 ----DLLFSYNIAVDRSDEMKRILGKSAASVGLKLPEVYQP 138
               DLLFSYNIAVDRSDEMKR+LGKSAASVGLKLPEVYQP
Sbjct: 71  HHHKDLLFSYNIAVDRSDEMKRLLGKSAASVGLKLPEVYQP 111

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g12270.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG10g12270.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9E2_CUCSA9.9e-4083.65Uncharacterized protein OS=Cucumis sativus GN=Csa_3G645910 PE=4 SV=1[more]
V4TI91_9ROSI5.6e-3575.47Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033129mg PE=3 SV=1[more]
A0A067DNY7_CITSI5.6e-3575.47Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033847mg PE=3 SV=1[more]
A0A059BGX6_EUCGR4.0e-3371.15Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02800 PE=3 SV=1[more]
A0A0B0PPW3_GOSAR6.9e-3377.23Uncharacterized protein OS=Gossypium arboreum GN=F383_03738 PE=4 SV=1[more]
BLAST of Cp4.1LG10g12270.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G51960.12.7e-2861.76 Complex 1 LYR protein (InterPro:IPR008011)[more]
BLAST of Cp4.1LG10g12270.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449453377|ref|XP_004144434.1|1.4e-3983.65PREDICTED: uncharacterized protein LOC101204721 [Cucumis sativus][more]
gi|567887378|ref|XP_006436211.1|8.1e-3575.47hypothetical protein CICLE_v10033129mg [Citrus clementina][more]
gi|702423380|ref|XP_010067265.1|5.8e-3371.15PREDICTED: uncharacterized protein LOC104454186 [Eucalyptus grandis][more]
gi|728847424|gb|KHG26867.1|9.9e-3377.23Uncharacterized protein F383_03738 [Gossypium arboreum][more]
gi|823133946|ref|XP_012466810.1|1.7e-3276.24PREDICTED: uncharacterized protein LOC105785311 isoform X2 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG10g12270Cp4.1LG10g12270gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG10g12270.1Cp4.1LG10g12270.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG10g12270.1:cds:001Cp4.1LG10g12270.1:cds:001CDS
Cp4.1LG10g12270.1:cds:002Cp4.1LG10g12270.1:cds:002CDS
Cp4.1LG10g12270.1:cds:003Cp4.1LG10g12270.1:cds:003CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG10g12270.1:three_prime_utr:001Cp4.1LG10g12270.1:three_prime_utr:001three_prime_UTR
Cp4.1LG10g12270.1:three_prime_utr:002Cp4.1LG10g12270.1:three_prime_utr:002three_prime_UTR
Cp4.1LG10g12270.1:three_prime_utr:003Cp4.1LG10g12270.1:three_prime_utr:003three_prime_UTR


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35763FAMILY NOT NAMEDcoord: 38..137
score: 4.8
NoneNo IPR availablePFAMPF13233Complex1_LYR_2coord: 41..129
score: 1.