Cp4.1LG08g07400.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.TACAGTTTCTAAAACCCTTAACCCCTTCAGTTCAGTCGTGTCCAGTAGAATTTCCAGATCTCCTCTTTTTTCTTTCATGGCTTCTGCTTGCCGAAGAATTGCGAGCAGAATCTCCCAATCTTCCTTCAGAACACTTCTCCGTACAGCTTCTCCGGCCAAATCTCCATCTTCTTCGTTCCCTCTGCCGCCTAAATCCTCTGCACCTTCCGTTAGCCGATTCTCTCTCGCCAGGTATTTCTCTTTATCCTTTTATTTCTCCTTGTTTCTGTAAATTATGTCGTTGCACTTCTTTATTTTTCTGATTGGTTCTACTTCTGCTAGGTCTCCGTCGGAGCTGGGATGCGTTCAATCGCTTTTGCCTTTTCACAACGCGGTTGCTGGAGCGAGAATGATTTCCTGTCTGAGCACAAATTCGAGGAGTTGTCGTGCGCTTTCTCAGGGTACTACTCTCTGCTGA TACAGTTTCTAAAACCCTTAACCCCTTCAGTTCAGTCGTGTCCAGTAGAATTTCCAGATCTCCTCTTTTTTCTTTCATGGCTTCTGCTTGCCGAAGAATTGCGAGCAGAATCTCCCAATCTTCCTTCAGAACACTTCTCCGTACAGCTTCTCCGGCCAAATCTCCATCTTCTTCGTTCCCTCTGCCGCCTAAATCCTCTGCACCTTCCGTTAGCCGATTCTCTCTCGCCAGGTCTCCGTCGGAGCTGGGATGCGTTCAATCGCTTTTGCCTTTTCACAACGCGGTTGCTGGAGCGAGAATGATTTCCTGTCTGAGCACAAATTCGAGGAGTTGTCGTGCGCTTTCTCAGGGTACTACTCTCTGCTGA ATGGCTTCTGCTTGCCGAAGAATTGCGAGCAGAATCTCCCAATCTTCCTTCAGAACACTTCTCCGTACAGCTTCTCCGGCCAAATCTCCATCTTCTTCGTTCCCTCTGCCGCCTAAATCCTCTGCACCTTCCGTTAGCCGATTCTCTCTCGCCAGGTCTCCGTCGGAGCTGGGATGCGTTCAATCGCTTTTGCCTTTTCACAACGCGGTTGCTGGAGCGAGAATGATTTCCTGTCTGAGCACAAATTCGAGGAGTTGTCGTGCGCTTTCTCAGGGTACTACTCTCTGCTGA MASACRRIASRISQSSFRTLLRTASPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCVQSLLPFHNAVAGARMISCLSTNSRSCRALSQGTTLC
BLAST of Cp4.1LG08g07400.1 vs. TrEMBL
Match: A0A0A0L1I6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G019950 PE=4 SV=1) HSP 1 Score: 144.1 bits (362), Expect = 9.1e-32 Identity = 80/91 (87.91%), Postives = 84/91 (92.31%), Query Frame = 1
BLAST of Cp4.1LG08g07400.1 vs. TrEMBL
Match: A0A067FD99_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034143mg PE=4 SV=1) HSP 1 Score: 99.0 bits (245), Expect = 3.4e-18 Identity = 60/99 (60.61%), Postives = 70/99 (70.71%), Query Frame = 1
BLAST of Cp4.1LG08g07400.1 vs. TrEMBL
Match: A0A067F5M1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034143mg PE=4 SV=1) HSP 1 Score: 97.4 bits (241), Expect = 9.8e-18 Identity = 59/96 (61.46%), Postives = 69/96 (71.88%), Query Frame = 1
BLAST of Cp4.1LG08g07400.1 vs. TrEMBL
Match: M5WEM2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013827mg PE=4 SV=1) HSP 1 Score: 96.3 bits (238), Expect = 2.2e-17 Identity = 59/96 (61.46%), Postives = 71/96 (73.96%), Query Frame = 1
BLAST of Cp4.1LG08g07400.1 vs. TrEMBL
Match: V4TJG5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023003mg PE=4 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 3.7e-17 Identity = 59/99 (59.60%), Postives = 69/99 (69.70%), Query Frame = 1
BLAST of Cp4.1LG08g07400.1 vs. TAIR10
Match: AT4G17310.1 (AT4G17310.1 unknown protein) HSP 1 Score: 86.3 bits (212), Expect = 1.1e-17 Identity = 54/98 (55.10%), Postives = 67/98 (68.37%), Query Frame = 1
BLAST of Cp4.1LG08g07400.1 vs. TAIR10
Match: AT5G47455.4 (AT5G47455.4 unknown protein) HSP 1 Score: 80.5 bits (197), Expect = 6.3e-16 Identity = 50/98 (51.02%), Postives = 64/98 (65.31%), Query Frame = 1
BLAST of Cp4.1LG08g07400.1 vs. TAIR10
Match: AT5G11630.1 (AT5G11630.1 unknown protein) HSP 1 Score: 47.0 bits (110), Expect = 7.7e-06 Identity = 37/93 (39.78%), Postives = 55/93 (59.14%), Query Frame = 1
BLAST of Cp4.1LG08g07400.1 vs. NCBI nr
Match: gi|659095923|ref|XP_008448835.1| (PREDICTED: uncharacterized protein LOC103490878 isoform X1 [Cucumis melo]) HSP 1 Score: 147.9 bits (372), Expect = 9.1e-33 Identity = 82/96 (85.42%), Postives = 86/96 (89.58%), Query Frame = 1
BLAST of Cp4.1LG08g07400.1 vs. NCBI nr
Match: gi|449458958|ref|XP_004147213.1| (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 [Cucumis sativus]) HSP 1 Score: 147.5 bits (371), Expect = 1.2e-32 Identity = 82/96 (85.42%), Postives = 86/96 (89.58%), Query Frame = 1
BLAST of Cp4.1LG08g07400.1 vs. NCBI nr
Match: gi|659095929|ref|XP_008448837.1| (PREDICTED: uncharacterized protein LOC103490878 isoform X3 [Cucumis melo]) HSP 1 Score: 144.4 bits (363), Expect = 1.0e-31 Identity = 80/91 (87.91%), Postives = 84/91 (92.31%), Query Frame = 1
BLAST of Cp4.1LG08g07400.1 vs. NCBI nr
Match: gi|659095927|ref|XP_008448836.1| (PREDICTED: uncharacterized protein LOC103490878 isoform X2 [Cucumis melo]) HSP 1 Score: 144.4 bits (363), Expect = 1.0e-31 Identity = 80/91 (87.91%), Postives = 84/91 (92.31%), Query Frame = 1
BLAST of Cp4.1LG08g07400.1 vs. NCBI nr
Match: gi|700200722|gb|KGN55855.1| (hypothetical protein Csa_3G019950 [Cucumis sativus]) HSP 1 Score: 144.1 bits (362), Expect = 1.3e-31 Identity = 80/91 (87.91%), Postives = 84/91 (92.31%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
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