Cp4.1LG08g07400 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG08g07400
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	At5g47455
Location	Cp4.1LG08 : 5812498 .. 5812954 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TACAGTTTCTAAAACCCTTAACCCCTTCAGTTCAGTCGTGTCCAGTAGAATTTCCAGATCTCCTCTTTTTTCTTTCATGGCTTCTGCTTGCCGAAGAATTGCGAGCAGAATCTCCCAATCTTCCTTCAGAACACTTCTCCGTACAGCTTCTCCGGCCAAATCTCCATCTTCTTCGTTCCCTCTGCCGCCTAAATCCTCTGCACCTTCCGTTAGCCGATTCTCTCTCGCCAGGTATTTCTCTTTATCCTTTTATTTCTCCTTGTTTCTGTAAATTATGTCGTTGCACTTCTTTATTTTTCTGATTGGTTCTACTTCTGCTAGGTCTCCGTCGGAGCTGGGATGCGTTCAATCGCTTTTGCCTTTTCACAACGCGGTTGCTGGAGCGAGAATGATTTCCTGTCTGAGCACAAATTCGAGGAGTTGTCGTGCGCTTTCTCAGGGTACTACTCTCTGCTGA

mRNA sequence

TACAGTTTCTAAAACCCTTAACCCCTTCAGTTCAGTCGTGTCCAGTAGAATTTCCAGATCTCCTCTTTTTTCTTTCATGGCTTCTGCTTGCCGAAGAATTGCGAGCAGAATCTCCCAATCTTCCTTCAGAACACTTCTCCGTACAGCTTCTCCGGCCAAATCTCCATCTTCTTCGTTCCCTCTGCCGCCTAAATCCTCTGCACCTTCCGTTAGCCGATTCTCTCTCGCCAGGTCTCCGTCGGAGCTGGGATGCGTTCAATCGCTTTTGCCTTTTCACAACGCGGTTGCTGGAGCGAGAATGATTTCCTGTCTGAGCACAAATTCGAGGAGTTGTCGTGCGCTTTCTCAGGGTACTACTCTCTGCTGA

Coding sequence (CDS)

ATGGCTTCTGCTTGCCGAAGAATTGCGAGCAGAATCTCCCAATCTTCCTTCAGAACACTTCTCCGTACAGCTTCTCCGGCCAAATCTCCATCTTCTTCGTTCCCTCTGCCGCCTAAATCCTCTGCACCTTCCGTTAGCCGATTCTCTCTCGCCAGGTCTCCGTCGGAGCTGGGATGCGTTCAATCGCTTTTGCCTTTTCACAACGCGGTTGCTGGAGCGAGAATGATTTCCTGTCTGAGCACAAATTCGAGGAGTTGTCGTGCGCTTTCTCAGGGTACTACTCTCTGCTGA

Protein sequence

MASACRRIASRISQSSFRTLLRTASPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCVQSLLPFHNAVAGARMISCLSTNSRSCRALSQGTTLC

Homology

[Close]

BLAST of Cp4.1LG08g07400 vs. TrEMBL
Match: A0A0A0L1I6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G019950 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 9.1e-32
Identity = 80/91 (87.91%), Postives = 84/91 (92.31%), Query Frame = 1


Query: 1  MASACRRIASRISQSSFRTLLRTASPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60
          MASAC+RIASRISQSSFRT +RT S AKS SS FPLP KS+APSV RFSLARSPSELGCV
Sbjct: 1  MASACQRIASRISQSSFRTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQ 92
          QSLLPFH+AVAGARMISCLSTNSRSCRALSQ
Sbjct: 61 QSLLPFHDAVAGARMISCLSTNSRSCRALSQ 91

[Close]

BLAST of Cp4.1LG08g07400 vs. TrEMBL
Match: A0A067FD99_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034143mg PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.4e-18
Identity = 60/99 (60.61%), Postives = 70/99 (70.71%), Query Frame = 1


Query: 1  MASACRRIASRISQSSFRTLLRTASPAKSP---SSSFPLPPKSSAPSVSRFSLARSPSEL 60
          MAS+C R   R S SS ++  R+ +P KSP   S+ FPLP KSS   + RFSL+RSPSEL
Sbjct: 1  MASSCHRFIRRSSLSSIKSAFRSNAP-KSPTAASAPFPLPTKSSPSPLRRFSLSRSPSEL 60

Query: 61 GCVQSLLPFHNAVAGARMISCLSTNSRSCRALSQGTTLC 97
          GC QSLLP H+ VA ARM SCLS  S+SCRALSQGT  C
Sbjct: 61 GCAQSLLPLHSVVAAARMTSCLSAASKSCRALSQGTLCC 98

[Close]

BLAST of Cp4.1LG08g07400 vs. TrEMBL
Match: A0A067F5M1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034143mg PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 9.8e-18
Identity = 59/96 (61.46%), Postives = 69/96 (71.88%), Query Frame = 1


Query: 1  MASACRRIASRISQSSFRTLLRTASPAKSP---SSSFPLPPKSSAPSVSRFSLARSPSEL 60
          MAS+C R   R S SS ++  R+ +P KSP   S+ FPLP KSS   + RFSL+RSPSEL
Sbjct: 1  MASSCHRFIRRSSLSSIKSAFRSNAP-KSPTAASAPFPLPTKSSPSPLRRFSLSRSPSEL 60

Query: 61 GCVQSLLPFHNAVAGARMISCLSTNSRSCRALSQGT 94
          GC QSLLP H+ VA ARM SCLS  S+SCRALSQGT
Sbjct: 61 GCAQSLLPLHSVVAAARMTSCLSAASKSCRALSQGT 95

[Close]

BLAST of Cp4.1LG08g07400 vs. TrEMBL
Match: M5WEM2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013827mg PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.2e-17
Identity = 59/96 (61.46%), Postives = 71/96 (73.96%), Query Frame = 1


Query: 1  MASACRRIASRISQSSFRTLLRTASPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60
          MASACR+ A+R S SS R+ +R+ +P KSP+S FPLP  + +  + R SL+R P  LGCV
Sbjct: 1  MASACRQFANRASLSSVRSAIRSNAP-KSPTSRFPLPTSTPSTPLRRSSLSRPPGALGCV 60

Query: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQGTTLC 97
          QSLLP H+AVA ARM S LS  SRSCRALSQG TLC
Sbjct: 61 QSLLPLHSAVAAARMTSSLSITSRSCRALSQG-TLC 94

[Close]

BLAST of Cp4.1LG08g07400 vs. TrEMBL
Match: V4TJG5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023003mg PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.7e-17
Identity = 59/99 (59.60%), Postives = 69/99 (69.70%), Query Frame = 1


Query: 1  MASACRRIASRISQSSFRTLLRTASPAKSP---SSSFPLPPKSSAPSVSRFSLARSPSEL 60
          MAS+C R   R S SS ++  R+ +P KSP   S+ F LP KSS   + RFSL+RSPSEL
Sbjct: 1  MASSCHRFIRRSSLSSIKSAFRSNAP-KSPTAASAPFRLPTKSSPSPLRRFSLSRSPSEL 60

Query: 61 GCVQSLLPFHNAVAGARMISCLSTNSRSCRALSQGTTLC 97
          GC QSLLP H+ VA ARM SCLS  S+SCRALSQGT  C
Sbjct: 61 GCAQSLLPLHSVVAAARMTSCLSAASKSCRALSQGTLCC 98

[Close]

BLAST of Cp4.1LG08g07400 vs. TAIR10
Match: AT4G17310.1 (AT4G17310.1 unknown protein)

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-17
Identity = 54/98 (55.10%), Postives = 67/98 (68.37%), Query Frame = 1


Query: 1  MASACRRIASRISQSSFRTLLR--TASPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELG 60
          MASACR++ +R S SS ++ LR  T S + + S+ F LP + +      FS +R PSELG
Sbjct: 1  MASACRKLFNRASVSSLKSTLRSTTGSTSAASSAGFRLPSQPTR----HFSFSRCPSELG 60

Query: 61 CVQSLLPFHNAVAGARMISCLSTNSRSCRALSQGTTLC 97
          CVQSLLP H+ VA AR+ SCLST SRS RALSQGT  C
Sbjct: 61 CVQSLLPLHSTVAAARLTSCLSTTSRSSRALSQGTLCC 94

[Close]

BLAST of Cp4.1LG08g07400 vs. TAIR10
Match: AT5G47455.4 (AT5G47455.4 unknown protein)

HSP 1 Score: 80.5 bits (197), Expect = 6.3e-16
Identity = 50/98 (51.02%), Postives = 64/98 (65.31%), Query Frame = 1


Query: 7   RIASRISQSSFRTLLRTA----------SPAKSPSSSFPLPPKSSAPSVSRFSLARSPSE 66
           R  SR S SSF++ +R++          SPA + S+ F +P K +A  + RFS +R PSE
Sbjct: 4   RFMSRSSVSSFKSAIRSSFRNSPIGTGSSPAAASSAGFRIPSKPAASPLPRFSFSRCPSE 63

Query: 67  LGCVQSLLPFHNAVAGARMISCLSTNSRSCRALSQGTT 95
           LGCVQSLLP H+ VA AR+ SCLST SRS RAL+Q  T
Sbjct: 64  LGCVQSLLPLHSTVAAARLTSCLSTTSRSSRALTQDGT 101

[Close]

BLAST of Cp4.1LG08g07400 vs. TAIR10
Match: AT5G11630.1 (AT5G11630.1 unknown protein)

HSP 1 Score: 47.0 bits (110), Expect = 7.7e-06
Identity = 37/93 (39.78%), Postives = 55/93 (59.14%), Query Frame = 1


Query: 1  MASACRRIASRISQSSFRTLLRTAS-PAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGC 60
          MAS CR + S+ + S+FR+ +   S   KS SS   +PP            +R   +LG 
Sbjct: 1  MASRCRSL-SKPAFSAFRSAMNKPSIRPKSASSFIGVPPSPG--------FSRPIGQLGS 60

Query: 61 VQSLLPFHNAVAGARMISCLSTNSRSCRALSQG 93
          +QSLLP ++AVA AR+ SCL  +S++ R+L+QG
Sbjct: 61 LQSLLPLYSAVASARLTSCLGIDSQNSRSLAQG 84

[Close]

BLAST of Cp4.1LG08g07400 vs. NCBI nr
Match: gi|659095923|ref|XP_008448835.1| (PREDICTED: uncharacterized protein LOC103490878 isoform X1 [Cucumis melo])

HSP 1 Score: 147.9 bits (372), Expect = 9.1e-33
Identity = 82/96 (85.42%), Postives = 86/96 (89.58%), Query Frame = 1


Query: 1  MASACRRIASRISQSSFRTLLRTASPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60
          MASAC+RIASRISQSSFRT +RT S AKS SS FPLP KS+APSV RFSLARSPSELGCV
Sbjct: 1  MASACQRIASRISQSSFRTFVRTNSSAKSSSSQFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQGTTLC 97
          QSLLPFH+AVAGARMISCLSTNSRSCRALSQG   C
Sbjct: 61 QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCC 96

[Close]

BLAST of Cp4.1LG08g07400 vs. NCBI nr
Match: gi|449458958|ref|XP_004147213.1| (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 1.2e-32
Identity = 82/96 (85.42%), Postives = 86/96 (89.58%), Query Frame = 1


Query: 1  MASACRRIASRISQSSFRTLLRTASPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60
          MASAC+RIASRISQSSFRT +RT S AKS SS FPLP KS+APSV RFSLARSPSELGCV
Sbjct: 1  MASACQRIASRISQSSFRTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQGTTLC 97
          QSLLPFH+AVAGARMISCLSTNSRSCRALSQG   C
Sbjct: 61 QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCC 96

[Close]

BLAST of Cp4.1LG08g07400 vs. NCBI nr
Match: gi|659095929|ref|XP_008448837.1| (PREDICTED: uncharacterized protein LOC103490878 isoform X3 [Cucumis melo])

HSP 1 Score: 144.4 bits (363), Expect = 1.0e-31
Identity = 80/91 (87.91%), Postives = 84/91 (92.31%), Query Frame = 1


Query: 1  MASACRRIASRISQSSFRTLLRTASPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60
          MASAC+RIASRISQSSFRT +RT S AKS SS FPLP KS+APSV RFSLARSPSELGCV
Sbjct: 1  MASACQRIASRISQSSFRTFVRTNSSAKSSSSQFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQ 92
          QSLLPFH+AVAGARMISCLSTNSRSCRALSQ
Sbjct: 61 QSLLPFHDAVAGARMISCLSTNSRSCRALSQ 91

[Close]

BLAST of Cp4.1LG08g07400 vs. NCBI nr
Match: gi|659095927|ref|XP_008448836.1| (PREDICTED: uncharacterized protein LOC103490878 isoform X2 [Cucumis melo])

HSP 1 Score: 144.4 bits (363), Expect = 1.0e-31
Identity = 80/91 (87.91%), Postives = 84/91 (92.31%), Query Frame = 1


Query: 1  MASACRRIASRISQSSFRTLLRTASPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60
          MASAC+RIASRISQSSFRT +RT S AKS SS FPLP KS+APSV RFSLARSPSELGCV
Sbjct: 1  MASACQRIASRISQSSFRTFVRTNSSAKSSSSQFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQ 92
          QSLLPFH+AVAGARMISCLSTNSRSCRALSQ
Sbjct: 61 QSLLPFHDAVAGARMISCLSTNSRSCRALSQ 91

[Close]

BLAST of Cp4.1LG08g07400 vs. NCBI nr
Match: gi|700200722|gb|KGN55855.1| (hypothetical protein Csa_3G019950 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 1.3e-31
Identity = 80/91 (87.91%), Postives = 84/91 (92.31%), Query Frame = 1


Query: 1  MASACRRIASRISQSSFRTLLRTASPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60
          MASAC+RIASRISQSSFRT +RT S AKS SS FPLP KS+APSV RFSLARSPSELGCV
Sbjct: 1  MASACQRIASRISQSSFRTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQ 92
          QSLLPFH+AVAGARMISCLSTNSRSCRALSQ
Sbjct: 61 QSLLPFHDAVAGARMISCLSTNSRSCRALSQ 91

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g07400 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG08g07400 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1I6_CUCSA	9.1e-32	87.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G019950 PE=4 SV=1	[more]
A0A067FD99_CITSI	3.4e-18	60.61	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034143mg PE=4 SV=1	[more]
A0A067F5M1_CITSI	9.8e-18	61.46	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034143mg PE=4 SV=1	[more]
M5WEM2_PRUPE	2.2e-17	61.46	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013827mg PE=4 SV=1	[more]
V4TJG5_9ROSI	3.7e-17	59.60	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023003mg PE=4 SV=1	[more]

BLAST of Cp4.1LG08g07400 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G17310.1	1.1e-17	55.10	unknown protein	[more]
AT5G47455.4	6.3e-16	51.02	unknown protein	[more]
AT5G11630.1	7.7e-06	39.78	unknown protein	[more]

BLAST of Cp4.1LG08g07400 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659095923\|ref\|XP_008448835.1\|	9.1e-33	85.42	PREDICTED: uncharacterized protein LOC103490878 isoform X1 [Cucumis melo]	[more]
gi\|449458958\|ref\|XP_004147213.1\|	1.2e-32	85.42	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isofo...	[more]
gi\|659095929\|ref\|XP_008448837.1\|	1.0e-31	87.91	PREDICTED: uncharacterized protein LOC103490878 isoform X3 [Cucumis melo]	[more]
gi\|659095927\|ref\|XP_008448836.1\|	1.0e-31	87.91	PREDICTED: uncharacterized protein LOC103490878 isoform X2 [Cucumis melo]	[more]
gi\|700200722\|gb\|KGN55855.1\|	1.3e-31	87.91	hypothetical protein Csa_3G019950 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g07400.1	Cp4.1LG08g07400.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33156	FAMILY NOT NAMED	coord: 1..96 score: 8.6
None	No IPR available	PANTHER	PTHR33156:SF9	SUBFAMILY NOT NAMED	coord: 1..96 score: 8.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG08g07400	Cucumber (Gy14) v2	cgybcpeB445
Cp4.1LG08g07400	Cucumber (Gy14) v2	cgybcpeB702
Cp4.1LG08g07400	Melon (DHL92) v3.6.1	cpemedB928
Cp4.1LG08g07400	Melon (DHL92) v3.6.1	cpemedB948
Cp4.1LG08g07400	Silver-seed gourd	carcpeB0586
Cp4.1LG08g07400	Silver-seed gourd	carcpeB0750
Cp4.1LG08g07400	Cucumber (Chinese Long) v3	cpecucB1047
Cp4.1LG08g07400	Cucumber (Chinese Long) v3	cpecucB1070
Cp4.1LG08g07400	Wax gourd	cpewgoB1078
Cp4.1LG08g07400	Cucurbita pepo (Zucchini)	cpecpeB230
Cp4.1LG08g07400	Cucurbita pepo (Zucchini)	cpecpeB250
Cp4.1LG08g07400	Cucurbita pepo (Zucchini)	cpecpeB508
Cp4.1LG08g07400	Cucumber (Gy14) v1	cgycpeB0857
Cp4.1LG08g07400	Cucurbita maxima (Rimu)	cmacpeB364
Cp4.1LG08g07400	Cucurbita maxima (Rimu)	cmacpeB852
Cp4.1LG08g07400	Cucurbita moschata (Rifu)	cmocpeB328
Cp4.1LG08g07400	Cucurbita moschata (Rifu)	cmocpeB601
Cp4.1LG08g07400	Cucurbita moschata (Rifu)	cmocpeB797
Cp4.1LG08g07400	Wild cucumber (PI 183967)	cpecpiB852
Cp4.1LG08g07400	Wild cucumber (PI 183967)	cpecpiB874
Cp4.1LG08g07400	Cucumber (Chinese Long) v2	cpecuB850
Cp4.1LG08g07400	Bottle gourd (USVL1VR-Ls)	cpelsiB721
Cp4.1LG08g07400	Watermelon (Charleston Gray)	cpewcgB766
Cp4.1LG08g07400	Watermelon (Charleston Gray)	cpewcgB780
Cp4.1LG08g07400	Watermelon (97103) v1	cpewmB828
Cp4.1LG08g07400	Melon (DHL92) v3.5.1	cpemeB790
Cp4.1LG08g07400	Melon (DHL92) v3.5.1	cpemeB814