Cp4.1LG08g07230.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG08g07230.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	BnaA08g08150D protein
Location	Cp4.1LG08 : 5632887 .. 5635580 (-)
Sequence length	436

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAAGTTTAAACGTAAAGCATTTTCTCGTGGCCTGCGACTCGGGATTCGGTCATCGGCTCGCATTCTCTCTCGTAGCTCAAACATTTGAGGTTTCTGTCTTCCCTTCGCCTTGATTTTTCCGGCAATTGGAAAACGAAGAAGATGAAGAGATCGGTGAGTGCTTCCAGAGTCTCCGATAAGGTGTTATTGAGTTCGCCGTCGTCGTCGTCGTCGTCGTCGTCGCAATCCGCAGTCTTTAGATCTTCGAGTGTGAGTTCCGGCTTGGACTCAGAGCTTTACCTACCGACGTACAATCCGTTCTCTCACGCGGCTGAAAAAGAACGTCGCCGTCTTAAGCTTGCCAAGATCTTCATCCACTTCATTCCCGTCGTCGTTGTCTTCTGCGCCGTCGTTCTCTGGTTCTTCTCTGATCCAGGTACTGAAATTACTAGAGTGAAAGATTCTCGTAGATCAAGATCGACTATTTGATATTAAAGACGGCGAGGAATTAAGAAATATAATATTTTCCCCAAAGTTATTGCTGCCCGTCCTGTAATATATCGTTAGGGATTGCAATGGATTATCGATTAACACGAGCAATCAGAGTGCTTAAAATCAATGGCCTTATTGTCGTCCTTGTCTCCATTTATGCGGCTTGTTGTTTTGATATTGGAAATGGTTGGGTGTTGAACAGAAGGAACGGGGATTGTTGGGGAAGTTGTTGTGATGGCTTATGGAAAACCGTTGAAGGACTTTAGAATAAGGATTTATCAGTATAAATTAAAGATTAGTCACCGTCCTAGCGTAGTACTTGTGAAGTTTGGAGTTGGAATCAATTGAGCATGTTGTCTCTATGTAGCTAAGAAATTTTCGAATGATAGTGTGTGCATATAAACTTTGGATTGCAGAGCTTTCCTGTGAATGCATTGCTCTCTAATATCATGTCGTTAACTTGGTATCTCTTAAACTTAAATGATCGGATATTGTATGATGCAAGTAAAAGGATACATGAATTGAGTATTCCCTGGTTAACAGTTACTATTCTTCTGTTGTTCAAGTAGAATTTCATTGTATAATTTAAAGCTAAATGATAAAGGTAATGTGATTATCGGGACTGTAAACTGTTTAGCTTCTGCCATTTATTTGTTGGGGTTTCTGAGCTTGCTCAATGCAGTCAATGATCCGCTTGTTGAGTTTATTCAAATATTCATAATGTTTTACTCCATCAAGATGGTAGATGCGTGCATGTTCTGTTTGTGTAGATTTTATATATTCTACTACTTGTGACCTTAGTGATAGTATAATTAAGAAGCCTTGTACTGGTCTCACTTTTCATTATCAAATTAGTGAATGTAAAAATCTAAACCTCCTGTATTCATCTAGGAACAGCAGTTTGAGTCTTAGCTAATTAAAAATGCTTAAAGGGTCTTAGAACTCGAGTAGACAGTCACTACTTTAGATAGCATCTTATTGGGCAGGAACAACAGTTTGAGACTTAGCTAATTAAAAATGCTTAAAGGGTATTAGAACTCGAGTAGACAAACACTACTTTAGATAGCATCATATTGGGTTATGGAGTCTGCTGCTTATCTATAGCTTATTTAATTGTTATACCTACTAAAACTATATATGGAAAATGGTCATATATAGTAAATGACTCTTTGTTGAAAAAAAATGAGATATATATAGTAGAGGGTTATTTTCATGTCAATTTTCCTACTTGCATTTTCTCTCTCTTGTTTGTGTTCATTGGAGTCATAAACCTTTAATCAATATTTCTCCTTACATTTTCTTTGTCCTGTTCATCTAGATCGAGTGTGTGCGTTGTCGTATGATACTAACCCATCATTCTATTTTAGAATTGTTTTCCTCCTTAGCTAGCATGCCAGCTAGTAAAGTCACCCTTTTATGAGATGTTCTTAGGATTTAGATAAGTCTTTATGTGGCATAGTAAGAACTAAGAGGACACTCGAAGAGCACATTCGTTTTCTTCTCTGACTTGAGTGGTGGTTCTATTACAAGGAAAATAAGTGGGAATGTCATAGTAAGTTTACATGGATATGTTCATGAACCGTTGAAAAACCATGAATTTAGGTGTTCAATATGAAGCATCAAAGTCATTAGCAGTGTTTGTTACTTTCAGGATTGTTTATGGTCTATGAATCTATCTTCTGTGTAGGTCAACAAATATAGACAGAGCTGTTTCTTCGGAGACCTTACTGGAATGGTCAGCTACTTGAAGCAAAGTATGTGATCTTGATGAATGGTATACTGAACAAGAGGACAATAAAGCCTATGCTCAGTAAGTATGCAGGCATAAGATGTCACTTTAAAATAGTCTCCATTAGTGACCTTTCTTTTGAATGATAGGCTTACTTTGCTTCTATTACTTATGTTAAAACGAACATCTCATCATGTCGGTTTGTTATCCTCGTGTGACTAACCATTAAAACCGTAGTTTACTCGATAATTGTACAGCTATGAAACTGATGTTAGTATGTGTTCAATGAGAGAGAGAGGAGTGATTTCAAGTGTATATTCTTGGCCTCTGTTCTTTGATCAGGGAAATTGGTTGTGGTTGCATTGTGGATGTAGAATCTCACTTGAACTCTCATGTCTTCTTCCTTGGATCCTTGATCTTTCTTTTACCAGACTAGATTGGATTGTTTGTTCTTAAAACTGGGTGTCTTCCAGCTCCAGGGCAACCCAGGTAT

mRNA sequence

TGAAGTTTAAACGTAAAGCATTTTCTCGTGGCCTGCGACTCGGGATTCGGTCATCGGCTCGCATTCTCTCTCGTAGCTCAAACATTTGAGGTTTCTGTCTTCCCTTCGCCTTGATTTTTCCGGCAATTGGAAAACGAAGAAGATGAAGAGATCGGTGAGTGCTTCCAGAGTCTCCGATAAGGTGTTATTGAGTTCGCCGTCGTCGTCGTCGTCGTCGTCGTCGCAATCCGCAGTCTTTAGATCTTCGAGTGTGAGTTCCGGCTTGGACTCAGAGCTTTACCTACCGACGTACAATCCGTTCTCTCACGCGGCTGAAAAAGAACGTCGCCGTCTTAAGCTTGCCAAGATCTTCATCCACTTCATTCCCGTCGTCGTTGTCTTCTGCGCCGTCGTTCTCTGGTTCTTCTCTGATCCAGCTCCAGGGCAACCCAGGTAT

Coding sequence (CDS)

ATGAAGAGATCGGTGAGTGCTTCCAGAGTCTCCGATAAGGTGTTATTGAGTTCGCCGTCGTCGTCGTCGTCGTCGTCGTCGCAATCCGCAGTCTTTAGATCTTCGAGTGTGAGTTCCGGCTTGGACTCAGAGCTTTACCTACCGACGTACAATCCGTTCTCTCACGCGGCTGAAAAAGAACGTCGCCGTCTTAAGCTTGCCAAGATCTTCATCCACTTCATTCCCGTCGTCGTTGTCTTCTGCGCCGTCGTTCTCTGGTTCTTCTCTGATCCAGCTCCAGGGCAACCCAGGTAT

Protein sequence

MKRSVSASRVSDKVLLSSPSSSSSSSSQSAVFRSSSVSSGLDSELYLPTYNPFSHAAEKERRRLKLAKIFIHFIPVVVVFCAVVLWFFSDPAPGQPRY

Homology

[Close]

BLAST of Cp4.1LG08g07230.1 vs. TrEMBL
Match: A0A0A0L1G0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017240 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.5e-21
Identity = 64/91 (70.33%), Postives = 74/91 (81.32%), Query Frame = 1


Query: 1  MKRSVSASRVSDKVLLSSPSSSSSSSSQSAVFRSSSVSSGLDSELYLPTYNPFSHAAEKE 60
          MKRS SAS VSD   + S    SSS S S++FRSSSVSSGL+SE YLPT++PFSHAAEK+
Sbjct: 1  MKRSSSASIVSDNRFVCS----SSSLSLSSIFRSSSVSSGLESEPYLPTFSPFSHAAEKK 60

Query: 61 RRRLKLAKIFIHFIPVVVVFCAVVLWFFSDP 92
          RR LKLAKIFIH IP V++FCA+VLW FSDP
Sbjct: 61 RRHLKLAKIFIHSIPFVILFCAIVLWLFSDP 87

[Close]

BLAST of Cp4.1LG08g07230.1 vs. TrEMBL
Match: M5WB70_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013973mg PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.9e-10
Identity = 42/91 (46.15%), Postives = 62/91 (68.13%), Query Frame = 1


Query: 1  MKRSVSASRVSDKVLLSSPSSSSSSSSQSAVFRSSSVSSGLDSELYLPTYNPFSHAAEKE 60
          M RS SASRVS+ ++++S S+S   S+       SS     D  L+LPTY+P SH A++E
Sbjct: 1  MHRSASASRVSEDLVVTSSSTSPPPSTFKPTTDDSS-----DQHLHLPTYDPLSHVAKRE 60

Query: 61 RRRLKLAKIFIHFIPVVVVFCAVVLWFFSDP 92
          RRR++ A+  IH IP+++V CA++LW FS+P
Sbjct: 61 RRRIRSAENAIHIIPLLLVLCAIILWLFSNP 86

[Close]

BLAST of Cp4.1LG08g07230.1 vs. TrEMBL
Match: A0A068UL66_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00027163001 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.0e-09
Identity = 43/94 (45.74%), Postives = 65/94 (69.15%), Query Frame = 1


Query: 1  MKRSVSASRVSDKVLLSSPSSSSSSSS---QSAVFRSSSVSSGLDSELYLPTYNPFSHAA 60
          M RS S++RVS++   +S SSS+++++    S   + ++ +S LD   +LPTYNP SH A
Sbjct: 1  MYRSSSSARVSEEFFSNSSSSSAAAAAGAMSSTNHKPATTTSDLD---HLPTYNPMSHLA 60

Query: 61 EKERRRLKLAKIFIHFIPVVVVFCAVVLWFFSDP 92
          +KE+ RL+  +  IH IPV++V CA+VLWFFS P
Sbjct: 61 KKEKSRLRSVENSIHLIPVLLVLCAIVLWFFSSP 91

[Close]

BLAST of Cp4.1LG08g07230.1 vs. TrEMBL
Match: B3H4T0_ARATH (Uncharacterized protein OS=Arabidopsis thaliana GN=At2g35658 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-08
Identity = 42/92 (45.65%), Postives = 58/92 (63.04%), Query Frame = 1


Query: 1  MKRSVSASRVSDKVLLSSPSSSSSSSSQSAVFRSSSVSSGLDSELYLPTYNPFSHAAEKE 60
          M+RS SAS VSD++  +SPS S S        R  + +   DS L LP Y+P SH  +K 
Sbjct: 1  MRRSASASIVSDQLSANSPSPSPSPP------RIKTSADSDDSHLLLPRYDPNSHPGKKN 60

Query: 61 RRRLKLAKIFIHFIPVVVVFCAVVLWFFSDPA 93
          + R + A+  IHFIP+V++ CAV+LW FS+PA
Sbjct: 61 KSRFRSAENAIHFIPIVLILCAVILWMFSNPA 86

[Close]

BLAST of Cp4.1LG08g07230.1 vs. TrEMBL
Match: B9T0L2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0192380 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-08
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 1


Query: 20 SSSSSSSSQSAVFRSSSVSSGL--DSELYLPTYNPFSHAAEKERRRLKLAKIFIHFIPVV 79
          SSSS    Q ++F ++S ++      +L LPTY+P SH A+KER RL+ A+  IH IP+V
Sbjct: 5  SSSSRVGDQESLFVNNSTNTNYADKEQLQLPTYDPLSHVAKKERSRLRSAENAIHLIPLV 64

Query: 80 VVFCAVVLWFFSDPA 93
          +V CA++LWFFS PA
Sbjct: 65 LVLCAIILWFFSSPA 79

[Close]

BLAST of Cp4.1LG08g07230.1 vs. TAIR10
Match: AT2G35658.2 (AT2G35658.2 unknown protein)

HSP 1 Score: 65.9 bits (159), Expect = 1.6e-11
Identity = 41/91 (45.05%), Postives = 57/91 (62.64%), Query Frame = 1


Query: 1  MKRSVSASRVSDKVLLSSPSSSSSSSSQSAVFRSSSVSSGLDSELYLPTYNPFSHAAEKE 60
          M+RS SAS VSD++  +SPS S S        R  + +   DS L LP Y+P SH  +K 
Sbjct: 1  MRRSASASIVSDQLSANSPSPSPSPP------RIKTSADSDDSHLLLPRYDPNSHPGKKN 60

Query: 61 RRRLKLAKIFIHFIPVVVVFCAVVLWFFSDP 92
          + R + A+  IHFIP+V++ CAV+LW FS+P
Sbjct: 61 KSRFRSAENAIHFIPIVLILCAVILWMFSNP 85

[Close]

BLAST of Cp4.1LG08g07230.1 vs. NCBI nr
Match: gi|659095827|ref|XP_008448787.1| (PREDICTED: uncharacterized protein LOC103490852 isoform X1 [Cucumis melo])

HSP 1 Score: 115.5 bits (288), Expect = 5.1e-23
Identity = 67/91 (73.63%), Postives = 77/91 (84.62%), Query Frame = 1


Query: 1  MKRSVSASRVSDKVLLSSPSSSSSSSSQSAVFRSSSVSSGLDSELYLPTYNPFSHAAEKE 60
          MKRS SAS VSDK  + S  SSSSS SQSA+FRSSSVS GL+SE YLPT++PFSHAAEK+
Sbjct: 1  MKRSSSASIVSDKRFVYS--SSSSSLSQSAIFRSSSVSFGLESEPYLPTFSPFSHAAEKK 60

Query: 61 RRRLKLAKIFIHFIPVVVVFCAVVLWFFSDP 92
          RR LKLAKIFIH IP +++FCA+VLW FSDP
Sbjct: 61 RRHLKLAKIFIHSIPFIILFCAIVLWLFSDP 89

[Close]

BLAST of Cp4.1LG08g07230.1 vs. NCBI nr
Match: gi|659095829|ref|XP_008448788.1| (PREDICTED: uncharacterized protein LOC103490852 isoform X2 [Cucumis melo])

HSP 1 Score: 115.5 bits (288), Expect = 5.1e-23
Identity = 67/91 (73.63%), Postives = 77/91 (84.62%), Query Frame = 1


Query: 1  MKRSVSASRVSDKVLLSSPSSSSSSSSQSAVFRSSSVSSGLDSELYLPTYNPFSHAAEKE 60
          MKRS SAS VSDK  + S  SSSSS SQSA+FRSSSVS GL+SE YLPT++PFSHAAEK+
Sbjct: 1  MKRSSSASIVSDKRFVYS--SSSSSLSQSAIFRSSSVSFGLESEPYLPTFSPFSHAAEKK 60

Query: 61 RRRLKLAKIFIHFIPVVVVFCAVVLWFFSDP 92
          RR LKLAKIFIH IP +++FCA+VLW FSDP
Sbjct: 61 RRHLKLAKIFIHSIPFIILFCAIVLWLFSDP 89

[Close]

BLAST of Cp4.1LG08g07230.1 vs. NCBI nr
Match: gi|778675256|ref|XP_011650378.1| (PREDICTED: uncharacterized protein LOC101212731 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 2.1e-21
Identity = 64/91 (70.33%), Postives = 74/91 (81.32%), Query Frame = 1


Query: 1  MKRSVSASRVSDKVLLSSPSSSSSSSSQSAVFRSSSVSSGLDSELYLPTYNPFSHAAEKE 60
          MKRS SAS VSD   + S    SSS S S++FRSSSVSSGL+SE YLPT++PFSHAAEK+
Sbjct: 1  MKRSSSASIVSDNRFVCS----SSSLSLSSIFRSSSVSSGLESEPYLPTFSPFSHAAEKK 60

Query: 61 RRRLKLAKIFIHFIPVVVVFCAVVLWFFSDP 92
          RR LKLAKIFIH IP V++FCA+VLW FSDP
Sbjct: 61 RRHLKLAKIFIHSIPFVILFCAIVLWLFSDP 87

[Close]

BLAST of Cp4.1LG08g07230.1 vs. NCBI nr
Match: gi|700200697|gb|KGN55830.1| (hypothetical protein Csa_3G017240 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 2.1e-21
Identity = 64/91 (70.33%), Postives = 74/91 (81.32%), Query Frame = 1


Query: 1  MKRSVSASRVSDKVLLSSPSSSSSSSSQSAVFRSSSVSSGLDSELYLPTYNPFSHAAEKE 60
          MKRS SAS VSD   + S    SSS S S++FRSSSVSSGL+SE YLPT++PFSHAAEK+
Sbjct: 1  MKRSSSASIVSDNRFVCS----SSSLSLSSIFRSSSVSSGLESEPYLPTFSPFSHAAEKK 60

Query: 61 RRRLKLAKIFIHFIPVVVVFCAVVLWFFSDP 92
          RR LKLAKIFIH IP V++FCA+VLW FSDP
Sbjct: 61 RRHLKLAKIFIHSIPFVILFCAIVLWLFSDP 87

[Close]

BLAST of Cp4.1LG08g07230.1 vs. NCBI nr
Match: gi|645265940|ref|XP_008238392.1| (PREDICTED: uncharacterized protein LOC103337030 [Prunus mume])

HSP 1 Score: 75.1 bits (183), Expect = 7.6e-11
Identity = 44/91 (48.35%), Postives = 63/91 (69.23%), Query Frame = 1


Query: 1  MKRSVSASRVSDKVLLSSPSSSSSSSSQSAVFRSSSVSSGLDSELYLPTYNPFSHAAEKE 60
          M RS SASRVS+ ++++S S+S   S+       SS     D  L+LPTY+P SH A+KE
Sbjct: 1  MHRSASASRVSEDLVVTSSSTSPPPSTFKPTTDDSS-----DQHLHLPTYDPLSHVAKKE 60

Query: 61 RRRLKLAKIFIHFIPVVVVFCAVVLWFFSDP 92
          RRR++ A+  IH IP+++V CA++LWFFS+P
Sbjct: 61 RRRIRSAENAIHIIPLLLVLCAIILWFFSNP 86

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g07230.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG08g07230.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1G0_CUCSA	1.5e-21	70.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017240 PE=4 SV=1	[more]
M5WB70_PRUPE	5.9e-10	46.15	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013973mg PE=4 SV=1	[more]
A0A068UL66_COFCA	5.0e-09	45.74	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00027163001 PE=4 SV=1	[more]
B3H4T0_ARATH	1.1e-08	45.65	Uncharacterized protein OS=Arabidopsis thaliana GN=At2g35658 PE=4 SV=1	[more]
B9T0L2_RICCO	1.4e-08	49.33	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0192380 PE=4 SV=1	[more]

BLAST of Cp4.1LG08g07230.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G35658.2	1.6e-11	45.05	unknown protein	[more]

BLAST of Cp4.1LG08g07230.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659095827\|ref\|XP_008448787.1\|	5.1e-23	73.63	PREDICTED: uncharacterized protein LOC103490852 isoform X1 [Cucumis melo]	[more]
gi\|659095829\|ref\|XP_008448788.1\|	5.1e-23	73.63	PREDICTED: uncharacterized protein LOC103490852 isoform X2 [Cucumis melo]	[more]
gi\|778675256\|ref\|XP_011650378.1\|	2.1e-21	70.33	PREDICTED: uncharacterized protein LOC101212731 [Cucumis sativus]	[more]
gi\|700200697\|gb\|KGN55830.1\|	2.1e-21	70.33	hypothetical protein Csa_3G017240 [Cucumis sativus]	[more]
gi\|645265940\|ref\|XP_008238392.1\|	7.6e-11	48.35	PREDICTED: uncharacterized protein LOC103337030 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG08g07230	Cp4.1LG08g07230	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG08g07230.1:five_prime_utr:001	Cp4.1LG08g07230.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG08g07230.1:cds:002	Cp4.1LG08g07230.1:cds:002	CDS
Cp4.1LG08g07230.1:cds:001	Cp4.1LG08g07230.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG08g07230.1	Cp4.1LG08g07230.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34189	FAMILY NOT NAMED	coord: 2..92 score: 5.8
None	No IPR available	PANTHER	PTHR34189:SF1	SUBFAMILY NOT NAMED	coord: 2..92 score: 5.8