Cp4.1LG08g06950.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g06950.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG08 : 5271867 .. 5272208 (-)
Sequence length342
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCCATTTGGGCTGTTTGAGGAGCTTACTGGGCTGGGCTCGGCCAGGGAGTTTGTGGGCTTCGAGGGCGATGCGGAGGAGGCCTGACGACATCTCCTTGAGGAGAGCGGTGGTGGAAATGTCGAGATGGAGCAGCGAAAGGGGTTGGGCACGTGGGTCCAGCTGGAGGGAGAAGGTGACGTGGCCGTGGCGGTGGCCGAAGAGGGTGCCGGTGAGCTTGCGGCGGAGAGTGAGACCGAGAGTGAGAGAGAGAGAGAGAGAGTTGCGGCGGTGTAAGAGGAATTGGAAGAGAGAGTGGAGGAGGGAAGAGGCTCTATTGGATAGAGAATGGGATTTGTGA

mRNA sequence

ATGGTCCATTTGGGCTGTTTGAGGAGCTTACTGGGCTGGGCTCGGCCAGGGAGTTTGTGGGCTTCGAGGGCGATGCGGAGGAGGCCTGACGACATCTCCTTGAGGAGAGCGGTGGTGGAAATGTCGAGATGGAGCAGCGAAAGGGGTTGGGCACGTGGGTCCAGCTGGAGGGAGAAGGTGACGTGGCCGTGGCGGTGGCCGAAGAGGGTGCCGGTGAGCTTGCGGCGGAGAGTGAGACCGAGAGTGAGAGAGAGAGAGAGAGAGTTGCGGCGGTGTAAGAGGAATTGGAAGAGAGAGTGGAGGAGGGAAGAGGCTCTATTGGATAGAGAATGGGATTTGTGA

Coding sequence (CDS)

ATGGTCCATTTGGGCTGTTTGAGGAGCTTACTGGGCTGGGCTCGGCCAGGGAGTTTGTGGGCTTCGAGGGCGATGCGGAGGAGGCCTGACGACATCTCCTTGAGGAGAGCGGTGGTGGAAATGTCGAGATGGAGCAGCGAAAGGGGTTGGGCACGTGGGTCCAGCTGGAGGGAGAAGGTGACGTGGCCGTGGCGGTGGCCGAAGAGGGTGCCGGTGAGCTTGCGGCGGAGAGTGAGACCGAGAGTGAGAGAGAGAGAGAGAGAGTTGCGGCGGTGTAAGAGGAATTGGAAGAGAGAGTGGAGGAGGGAAGAGGCTCTATTGGATAGAGAATGGGATTTGTGA

Protein sequence

MVHLGCLRSLLGWARPGSLWASRAMRRRPDDISLRRAVVEMSRWSSERGWARGSSWREKVTWPWRWPKRVPVSLRRRVRPRVRERERELRRCKRNWKREWRREEALLDREWDL
Homology
[Close]
BLAST of Cp4.1LG08g06950.1 vs. TrEMBL
Match: A0A0A0LFY2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822470 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.6e-30
Identity = 77/106 (72.64%), Postives = 82/106 (77.36%), Query Frame = 1 

Query: 1   MVHLGCLRSLLGWARPGSLWASRAMRRRPDDISLRRAVVEMSRWSSERGWARGSSWREKV 60
           MV  GC RS +G ARPGSLW  RAMRR P+DISLRRAVVEM RWS+ RG  RGSS REKV
Sbjct: 37  MVQEGCWRSFVGRARPGSLWEWRAMRRTPEDISLRRAVVEMWRWSNVRGSVRGSSCREKV 96

Query: 61  TWPWRWPKRVPVSLRRRVRPRVRERERELRRCKRNWKREWRREEAL 107
           TWPWRWPKRVPVSLRRRV      RER LRR ++  KREWRREE L
Sbjct: 97  TWPWRWPKRVPVSLRRRVM-----RERALRRWRKKRKREWRREEGL 137

[Close]
BLAST of Cp4.1LG08g06950.1 vs. NCBI nr
Match: gi|700204364|gb|KGN59497.1| (hypothetical protein Csa_3G822470 [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 3.8e-30
Identity = 77/106 (72.64%), Postives = 82/106 (77.36%), Query Frame = 1 

Query: 1   MVHLGCLRSLLGWARPGSLWASRAMRRRPDDISLRRAVVEMSRWSSERGWARGSSWREKV 60
           MV  GC RS +G ARPGSLW  RAMRR P+DISLRRAVVEM RWS+ RG  RGSS REKV
Sbjct: 37  MVQEGCWRSFVGRARPGSLWEWRAMRRTPEDISLRRAVVEMWRWSNVRGSVRGSSCREKV 96

Query: 61  TWPWRWPKRVPVSLRRRVRPRVRERERELRRCKRNWKREWRREEAL 107
           TWPWRWPKRVPVSLRRRV      RER LRR ++  KREWRREE L
Sbjct: 97  TWPWRWPKRVPVSLRRRVM-----RERALRRWRKKRKREWRREEGL 137

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g06950.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG08g06950.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LFY2_CUCSA2.6e-3072.64Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822470 PE=4 SV=1[more]
BLAST of Cp4.1LG08g06950.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG08g06950.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700204364|gb|KGN59497.1|3.8e-3072.64hypothetical protein Csa_3G822470 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG08g06950Cp4.1LG08g06950gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG08g06950.1:cds:001Cp4.1LG08g06950.1:cds:001CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG08g06950.1Cp4.1LG08g06950.1-proteinpolypeptide