Cp4.1LG08g06950 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g06950
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG08 : 5271867 .. 5272208 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCCATTTGGGCTGTTTGAGGAGCTTACTGGGCTGGGCTCGGCCAGGGAGTTTGTGGGCTTCGAGGGCGATGCGGAGGAGGCCTGACGACATCTCCTTGAGGAGAGCGGTGGTGGAAATGTCGAGATGGAGCAGCGAAAGGGGTTGGGCACGTGGGTCCAGCTGGAGGGAGAAGGTGACGTGGCCGTGGCGGTGGCCGAAGAGGGTGCCGGTGAGCTTGCGGCGGAGAGTGAGACCGAGAGTGAGAGAGAGAGAGAGAGAGTTGCGGCGGTGTAAGAGGAATTGGAAGAGAGAGTGGAGGAGGGAAGAGGCTCTATTGGATAGAGAATGGGATTTGTGA

mRNA sequence

ATGGTCCATTTGGGCTGTTTGAGGAGCTTACTGGGCTGGGCTCGGCCAGGGAGTTTGTGGGCTTCGAGGGCGATGCGGAGGAGGCCTGACGACATCTCCTTGAGGAGAGCGGTGGTGGAAATGTCGAGATGGAGCAGCGAAAGGGGTTGGGCACGTGGGTCCAGCTGGAGGGAGAAGGTGACGTGGCCGTGGCGGTGGCCGAAGAGGGTGCCGGTGAGCTTGCGGCGGAGAGTGAGACCGAGAGTGAGAGAGAGAGAGAGAGAGTTGCGGCGGTGTAAGAGGAATTGGAAGAGAGAGTGGAGGAGGGAAGAGGCTCTATTGGATAGAGAATGGGATTTGTGA

Coding sequence (CDS)

ATGGTCCATTTGGGCTGTTTGAGGAGCTTACTGGGCTGGGCTCGGCCAGGGAGTTTGTGGGCTTCGAGGGCGATGCGGAGGAGGCCTGACGACATCTCCTTGAGGAGAGCGGTGGTGGAAATGTCGAGATGGAGCAGCGAAAGGGGTTGGGCACGTGGGTCCAGCTGGAGGGAGAAGGTGACGTGGCCGTGGCGGTGGCCGAAGAGGGTGCCGGTGAGCTTGCGGCGGAGAGTGAGACCGAGAGTGAGAGAGAGAGAGAGAGAGTTGCGGCGGTGTAAGAGGAATTGGAAGAGAGAGTGGAGGAGGGAAGAGGCTCTATTGGATAGAGAATGGGATTTGTGA

Protein sequence

MVHLGCLRSLLGWARPGSLWASRAMRRRPDDISLRRAVVEMSRWSSERGWARGSSWREKVTWPWRWPKRVPVSLRRRVRPRVRERERELRRCKRNWKREWRREEALLDREWDL
Homology
[Close]
BLAST of Cp4.1LG08g06950 vs. TrEMBL
Match: A0A0A0LFY2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822470 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.6e-30
Identity = 77/106 (72.64%), Postives = 82/106 (77.36%), Query Frame = 1 

Query: 1   MVHLGCLRSLLGWARPGSLWASRAMRRRPDDISLRRAVVEMSRWSSERGWARGSSWREKV 60
           MV  GC RS +G ARPGSLW  RAMRR P+DISLRRAVVEM RWS+ RG  RGSS REKV
Sbjct: 37  MVQEGCWRSFVGRARPGSLWEWRAMRRTPEDISLRRAVVEMWRWSNVRGSVRGSSCREKV 96

Query: 61  TWPWRWPKRVPVSLRRRVRPRVRERERELRRCKRNWKREWRREEAL 107
           TWPWRWPKRVPVSLRRRV      RER LRR ++  KREWRREE L
Sbjct: 97  TWPWRWPKRVPVSLRRRVM-----RERALRRWRKKRKREWRREEGL 137

[Close]
BLAST of Cp4.1LG08g06950 vs. NCBI nr
Match: gi|700204364|gb|KGN59497.1| (hypothetical protein Csa_3G822470 [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 3.8e-30
Identity = 77/106 (72.64%), Postives = 82/106 (77.36%), Query Frame = 1 

Query: 1   MVHLGCLRSLLGWARPGSLWASRAMRRRPDDISLRRAVVEMSRWSSERGWARGSSWREKV 60
           MV  GC RS +G ARPGSLW  RAMRR P+DISLRRAVVEM RWS+ RG  RGSS REKV
Sbjct: 37  MVQEGCWRSFVGRARPGSLWEWRAMRRTPEDISLRRAVVEMWRWSNVRGSVRGSSCREKV 96

Query: 61  TWPWRWPKRVPVSLRRRVRPRVRERERELRRCKRNWKREWRREEAL 107
           TWPWRWPKRVPVSLRRRV      RER LRR ++  KREWRREE L
Sbjct: 97  TWPWRWPKRVPVSLRRRVM-----RERALRRWRKKRKREWRREEGL 137

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g06950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG08g06950 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LFY2_CUCSA2.6e-3072.64Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822470 PE=4 SV=1[more]
BLAST of Cp4.1LG08g06950 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG08g06950 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700204364|gb|KGN59497.1|3.8e-3072.64hypothetical protein Csa_3G822470 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g06950.1Cp4.1LG08g06950.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG08g06950Cucumber (Gy14) v1cgycpeB0899
Cp4.1LG08g06950Cucurbita maxima (Rimu)cmacpeB295
Cp4.1LG08g06950Cucurbita maxima (Rimu)cmacpeB855
Cp4.1LG08g06950Cucurbita moschata (Rifu)cmocpeB258
Cp4.1LG08g06950Cucurbita moschata (Rifu)cmocpeB796
Cp4.1LG08g06950Wild cucumber (PI 183967)cpecpiB855
Cp4.1LG08g06950Cucumber (Chinese Long) v2cpecuB853
Cp4.1LG08g06950Bottle gourd (USVL1VR-Ls)cpelsiB710
Cp4.1LG08g06950Watermelon (Charleston Gray)cpewcgB774
Cp4.1LG08g06950Watermelon (97103) v1cpewmB836
Cp4.1LG08g06950Melon (DHL92) v3.5.1cpemeB800
Cp4.1LG08g06950Cucumber (Gy14) v2cgybcpeB451
Cp4.1LG08g06950Melon (DHL92) v3.6.1cpemedB941
Cp4.1LG08g06950Silver-seed gourdcarcpeB0445
Cp4.1LG08g06950Cucumber (Chinese Long) v3cpecucB1050
Cp4.1LG08g06950Cucumber (Chinese Long) v3cpecucB1058
Cp4.1LG08g06950Wax gourdcpewgoB1081
Cp4.1LG08g06950Cucurbita pepo (Zucchini)cpecpeB486