Cp4.1LG07g09770.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG07g09770.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG07 : 8764606 .. 8764848 (-)
Sequence length243
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGATGGAGAAGAAGCCGCACGGCGTCATTCCGCTCTCAATGACTACCGCAAGAAGCTCCTTCAGCACAAAGAACTCGACGCTAGAGTCCGATCTCGTATATCCCTCCCTTTACAATCTATGCTCCTCTTCTTTACTTTTCTCAATTCTGCTACTAGACGACTCGATGCTTCTTTGCTCATTTCAGTAATTGTTGTAGTCTTTCAATCTTCTGCAATGGTTTCGTTCCGTAGAATTTGA

mRNA sequence

ATGGCGGATGGAGAAGAAGCCGCACGGCGTCATTCCGCTCTCAATGACTACCGCAAGAAGCTCCTTCAGCACAAAGAACTCGACGCTAGAGTCCGATCTCGTATATCCCTCCCTTTACAATCTATGCTCCTCTTCTTTACTTTTCTCAATTCTGCTACTAGACGACTCGATGCTTCTTTGCTCATTTCAGTAATTGTTGTAGTCTTTCAATCTTCTGCAATGGTTTCGTTCCGTAGAATTTGA

Coding sequence (CDS)

ATGGCGGATGGAGAAGAAGCCGCACGGCGTCATTCCGCTCTCAATGACTACCGCAAGAAGCTCCTTCAGCACAAAGAACTCGACGCTAGAGTCCGATCTCGTATATCCCTCCCTTTACAATCTATGCTCCTCTTCTTTACTTTTCTCAATTCTGCTACTAGACGACTCGATGCTTCTTTGCTCATTTCAGTAATTGTTGTAGTCTTTCAATCTTCTGCAATGGTTTCGTTCCGTAGAATTTGA

Protein sequence

MADGEEAARRHSALNDYRKKLLQHKELDARVRSRISLPLQSMLLFFTFLNSATRRLDASLLISVIVVVFQSSAMVSFRRI
Homology
[Close]
BLAST of Cp4.1LG07g09770.1 vs. TrEMBL
Match: A0A0A0LL40_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G362430 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.5e-08
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 1  MADGEEAARRHSALNDYRKKLLQHKELDARVRS 34
          MADGEEAARRH+A+NDYRKKLLQHKELDARVRS
Sbjct: 1  MADGEEAARRHTAVNDYRKKLLQHKELDARVRS 33

[Close]
BLAST of Cp4.1LG07g09770.1 vs. TrEMBL
Match: A0A0A0LNP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G362420 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.9e-07
Identity = 29/33 (87.88%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 1  MADGEEAARRHSALNDYRKKLLQHKELDARVRS 34
          MADGE+AARRH+A+NDYRKKLLQHKEL+ARVRS
Sbjct: 1  MADGEDAARRHTAVNDYRKKLLQHKELEARVRS 33

[Close]
BLAST of Cp4.1LG07g09770.1 vs. NCBI nr
Match: gi|659088011|ref|XP_008444753.1| (PREDICTED: 26S protease regulatory subunit S10B homolog B-like [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 6.4e-08
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 1  MADGEEAARRHSALNDYRKKLLQHKELDARVRS 34
          MADGEEAARRH+A+NDYRKKLLQHKELDARVRS
Sbjct: 1  MADGEEAARRHTAVNDYRKKLLQHKELDARVRS 33

[Close]
BLAST of Cp4.1LG07g09770.1 vs. NCBI nr
Match: gi|449469945|ref|XP_004152679.1| (PREDICTED: 26S protease regulatory subunit S10B homolog B-like [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 6.4e-08
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 1  MADGEEAARRHSALNDYRKKLLQHKELDARVRS 34
          MADGEEAARRH+A+NDYRKKLLQHKELDARVRS
Sbjct: 1  MADGEEAARRHTAVNDYRKKLLQHKELDARVRS 33

[Close]
BLAST of Cp4.1LG07g09770.1 vs. NCBI nr
Match: gi|449469943|ref|XP_004152678.1| (PREDICTED: 26S protease regulatory subunit S10B homolog B [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 4.2e-07
Identity = 29/33 (87.88%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 1  MADGEEAARRHSALNDYRKKLLQHKELDARVRS 34
          MADGE+AARRH+A+NDYRKKLLQHKEL+ARVRS
Sbjct: 1  MADGEDAARRHTAVNDYRKKLLQHKELEARVRS 33

[Close]
BLAST of Cp4.1LG07g09770.1 vs. NCBI nr
Match: gi|659088007|ref|XP_008444751.1| (PREDICTED: 26S protease regulatory subunit S10B homolog B [Cucumis melo])

HSP 1 Score: 61.6 bits (148), Expect = 7.1e-07
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 1 

Query: 1  MADGEEAARRHSALNDYRKKLLQHKELDARVRS 34
          MAD E+AARRH+A+NDYRKKLLQHKELDARVRS
Sbjct: 1  MADSEDAARRHTAVNDYRKKLLQHKELDARVRS 33

The following BLAST results are available for this feature:
BLAST of Cp4.1LG07g09770.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG07g09770.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LL40_CUCSA4.5e-0893.94Uncharacterized protein OS=Cucumis sativus GN=Csa_2G362430 PE=3 SV=1[more]
A0A0A0LNP0_CUCSA2.9e-0787.88Uncharacterized protein OS=Cucumis sativus GN=Csa_2G362420 PE=3 SV=1[more]
BLAST of Cp4.1LG07g09770.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG07g09770.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659088011|ref|XP_008444753.1|6.4e-0893.94PREDICTED: 26S protease regulatory subunit S10B homolog B-like [Cucumis melo][more]
gi|449469945|ref|XP_004152679.1|6.4e-0893.94PREDICTED: 26S protease regulatory subunit S10B homolog B-like [Cucumis sativus][more]
gi|449469943|ref|XP_004152678.1|4.2e-0787.88PREDICTED: 26S protease regulatory subunit S10B homolog B [Cucumis sativus][more]
gi|659088007|ref|XP_008444751.1|7.1e-0787.88PREDICTED: 26S protease regulatory subunit S10B homolog B [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG07g09770Cp4.1LG07g09770gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG07g09770.1:cds:001Cp4.1LG07g09770.1:cds:001CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG07g09770.1Cp4.1LG07g09770.1-proteinpolypeptide