Cp4.1LG07g09770 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG07g09770
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG07 : 8764606 .. 8764848 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGATGGAGAAGAAGCCGCACGGCGTCATTCCGCTCTCAATGACTACCGCAAGAAGCTCCTTCAGCACAAAGAACTCGACGCTAGAGTCCGATCTCGTATATCCCTCCCTTTACAATCTATGCTCCTCTTCTTTACTTTTCTCAATTCTGCTACTAGACGACTCGATGCTTCTTTGCTCATTTCAGTAATTGTTGTAGTCTTTCAATCTTCTGCAATGGTTTCGTTCCGTAGAATTTGA

mRNA sequence

ATGGCGGATGGAGAAGAAGCCGCACGGCGTCATTCCGCTCTCAATGACTACCGCAAGAAGCTCCTTCAGCACAAAGAACTCGACGCTAGAGTCCGATCTCGTATATCCCTCCCTTTACAATCTATGCTCCTCTTCTTTACTTTTCTCAATTCTGCTACTAGACGACTCGATGCTTCTTTGCTCATTTCAGTAATTGTTGTAGTCTTTCAATCTTCTGCAATGGTTTCGTTCCGTAGAATTTGA

Coding sequence (CDS)

ATGGCGGATGGAGAAGAAGCCGCACGGCGTCATTCCGCTCTCAATGACTACCGCAAGAAGCTCCTTCAGCACAAAGAACTCGACGCTAGAGTCCGATCTCGTATATCCCTCCCTTTACAATCTATGCTCCTCTTCTTTACTTTTCTCAATTCTGCTACTAGACGACTCGATGCTTCTTTGCTCATTTCAGTAATTGTTGTAGTCTTTCAATCTTCTGCAATGGTTTCGTTCCGTAGAATTTGA

Protein sequence

MADGEEAARRHSALNDYRKKLLQHKELDARVRSRISLPLQSMLLFFTFLNSATRRLDASLLISVIVVVFQSSAMVSFRRI
Homology
[Close]
BLAST of Cp4.1LG07g09770 vs. TrEMBL
Match: A0A0A0LL40_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G362430 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.5e-08
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 1  MADGEEAARRHSALNDYRKKLLQHKELDARVRS 34
          MADGEEAARRH+A+NDYRKKLLQHKELDARVRS
Sbjct: 1  MADGEEAARRHTAVNDYRKKLLQHKELDARVRS 33

[Close]
BLAST of Cp4.1LG07g09770 vs. TrEMBL
Match: A0A0A0LNP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G362420 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.9e-07
Identity = 29/33 (87.88%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 1  MADGEEAARRHSALNDYRKKLLQHKELDARVRS 34
          MADGE+AARRH+A+NDYRKKLLQHKEL+ARVRS
Sbjct: 1  MADGEDAARRHTAVNDYRKKLLQHKELEARVRS 33

[Close]
BLAST of Cp4.1LG07g09770 vs. NCBI nr
Match: gi|659088011|ref|XP_008444753.1| (PREDICTED: 26S protease regulatory subunit S10B homolog B-like [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 6.4e-08
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 1  MADGEEAARRHSALNDYRKKLLQHKELDARVRS 34
          MADGEEAARRH+A+NDYRKKLLQHKELDARVRS
Sbjct: 1  MADGEEAARRHTAVNDYRKKLLQHKELDARVRS 33

[Close]
BLAST of Cp4.1LG07g09770 vs. NCBI nr
Match: gi|449469945|ref|XP_004152679.1| (PREDICTED: 26S protease regulatory subunit S10B homolog B-like [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 6.4e-08
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 1  MADGEEAARRHSALNDYRKKLLQHKELDARVRS 34
          MADGEEAARRH+A+NDYRKKLLQHKELDARVRS
Sbjct: 1  MADGEEAARRHTAVNDYRKKLLQHKELDARVRS 33

[Close]
BLAST of Cp4.1LG07g09770 vs. NCBI nr
Match: gi|449469943|ref|XP_004152678.1| (PREDICTED: 26S protease regulatory subunit S10B homolog B [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 4.2e-07
Identity = 29/33 (87.88%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 1  MADGEEAARRHSALNDYRKKLLQHKELDARVRS 34
          MADGE+AARRH+A+NDYRKKLLQHKEL+ARVRS
Sbjct: 1  MADGEDAARRHTAVNDYRKKLLQHKELEARVRS 33

[Close]
BLAST of Cp4.1LG07g09770 vs. NCBI nr
Match: gi|659088007|ref|XP_008444751.1| (PREDICTED: 26S protease regulatory subunit S10B homolog B [Cucumis melo])

HSP 1 Score: 61.6 bits (148), Expect = 7.1e-07
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 1 

Query: 1  MADGEEAARRHSALNDYRKKLLQHKELDARVRS 34
          MAD E+AARRH+A+NDYRKKLLQHKELDARVRS
Sbjct: 1  MADSEDAARRHTAVNDYRKKLLQHKELDARVRS 33

The following BLAST results are available for this feature:
BLAST of Cp4.1LG07g09770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG07g09770 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LL40_CUCSA4.5e-0893.94Uncharacterized protein OS=Cucumis sativus GN=Csa_2G362430 PE=3 SV=1[more]
A0A0A0LNP0_CUCSA2.9e-0787.88Uncharacterized protein OS=Cucumis sativus GN=Csa_2G362420 PE=3 SV=1[more]
BLAST of Cp4.1LG07g09770 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG07g09770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659088011|ref|XP_008444753.1|6.4e-0893.94PREDICTED: 26S protease regulatory subunit S10B homolog B-like [Cucumis melo][more]
gi|449469945|ref|XP_004152679.1|6.4e-0893.94PREDICTED: 26S protease regulatory subunit S10B homolog B-like [Cucumis sativus][more]
gi|449469943|ref|XP_004152678.1|4.2e-0787.88PREDICTED: 26S protease regulatory subunit S10B homolog B [Cucumis sativus][more]
gi|659088007|ref|XP_008444751.1|7.1e-0787.88PREDICTED: 26S protease regulatory subunit S10B homolog B [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG07g09770.1Cp4.1LG07g09770.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG07g09770Silver-seed gourdcarcpeB0055
Cp4.1LG07g09770Silver-seed gourdcarcpeB0190
Cp4.1LG07g09770Silver-seed gourdcarcpeB0361
Cp4.1LG07g09770Silver-seed gourdcarcpeB0817
Cp4.1LG07g09770Silver-seed gourdcarcpeB1496
Cp4.1LG07g09770Cucumber (Chinese Long) v3cpecucB1014
Cp4.1LG07g09770Cucumber (Chinese Long) v3cpecucB1015
Cp4.1LG07g09770Wax gourdcpewgoB1006
Cp4.1LG07g09770Wax gourdcpewgoB1023
Cp4.1LG07g09770Wax gourdcpewgoB1068
Cp4.1LG07g09770Cucurbita pepo (Zucchini)cpecpeB139
Cp4.1LG07g09770Cucurbita pepo (Zucchini)cpecpeB140
Cp4.1LG07g09770Cucurbita pepo (Zucchini)cpecpeB373
Cp4.1LG07g09770Cucurbita pepo (Zucchini)cpecpeB504
Cp4.1LG07g09770Cucumber (Gy14) v1cgycpeB0356
Cp4.1LG07g09770Cucurbita maxima (Rimu)cmacpeB164
Cp4.1LG07g09770Cucurbita maxima (Rimu)cmacpeB203
Cp4.1LG07g09770Cucurbita maxima (Rimu)cmacpeB789
Cp4.1LG07g09770Cucurbita moschata (Rifu)cmocpeB175
Cp4.1LG07g09770Cucurbita moschata (Rifu)cmocpeB742
Cp4.1LG07g09770Cucurbita moschata (Rifu)cmocpeB745
Cp4.1LG07g09770Wild cucumber (PI 183967)cpecpiB821
Cp4.1LG07g09770Wild cucumber (PI 183967)cpecpiB822
Cp4.1LG07g09770Cucumber (Chinese Long) v2cpecuB820
Cp4.1LG07g09770Bottle gourd (USVL1VR-Ls)cpelsiB659
Cp4.1LG07g09770Bottle gourd (USVL1VR-Ls)cpelsiB660
Cp4.1LG07g09770Watermelon (Charleston Gray)cpewcgB724
Cp4.1LG07g09770Watermelon (Charleston Gray)cpewcgB733
Cp4.1LG07g09770Watermelon (97103) v1cpewmB806
Cp4.1LG07g09770Melon (DHL92) v3.5.1cpemeB771
Cp4.1LG07g09770Melon (DHL92) v3.5.1cpemeB772
Cp4.1LG07g09770Cucumber (Gy14) v2cgybcpeB271
Cp4.1LG07g09770Melon (DHL92) v3.6.1cpemedB907
Cp4.1LG07g09770Melon (DHL92) v3.6.1cpemedB908