Cp4.1LG06g09380.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG06g09380.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG06 : 7457796 .. 7462953 (+)
Sequence length1283
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAATAAACGGTTGCCTTCCTTCTATCAATTTGATTTTTACCATTATCTTCTGGACACTCACACCTTCTTTCTGCCAAAACCATATCAACAATTTTCAGAAGTTTCAGATCAACAAACCTCAAATTGAGCGCTGAAAATCGCAGAAAATGGCTTTACAGACGAGTTTGTGTCTTCATCGTTCACCATCTCTTTCTCCTTCTCCTTCTCATTCTTTCCTCCCATTTGGGTCTCTCCAGCTCAAGCCTCAGAATCTCGTTCTTCAGGTGAGATTTCATCTCTTCTTCTTATGGATTATTGGATTTCTCTCATGGATGATTGATTCTGTTTTCTTTAACATATAAAATATGGTGTTGTTCTTGTATTATGCTAGTGAGCTTCAGTTGTTGAATCCTGGTTGAAATTTGAGGAAGTGGAATAGGTTATGGCTGGAAATTCGAATTCTATTTTTGAATTTTCGTATTTTAAATTTTGAGGAACTGTGTTTTGTTCTTGAATTTCATTCATAAGTCCTGTTTGAGATGAACTCTTTTTAGATTTCTATCCTGAAAAAAATGAAATCTGCCGGTTCTTAAAAAGTTGGAAAGAAACTTTGAGGCAGTTTGAAATGATCGTTTCTGAGTTTTGATTTTAAAGAAGAAGCACTCTTTCCACTGAATGAAGGTGCATTGAAGTGTTTTTAGAAATTTCAAAGTTACTTTGATCGTAAAAGAAAACTCAACATGACTCTGTTTGTGTTCATTTAAGCACAAAAGTTCTGTTTTGGTCATGATATGTTTCAAGTTCTTAGTGAAAATTCTTCTGATGCTACATGATCTGTCAAGTTAGGTTATGAATTTTGTAATGGTCGAATTCCTGAAATCATTTTAGTCCGAACGAGTTCGATATATTAATTGTTTGTCAAAATCATAATGTTTAGATTCAACAAGAGCCTGAAAATTATGTAATTATTTGTTTCTTGGTAGCACTTTTTTTTATTACAGTATCTGTAATGTTTTTTTGGTTAAATTATAAAGTTAGGTTCTATGGTTTGGAGAAAGTTCAAGTTTAGTTCACATGGTATAACACCTCAAGCCCACCACTAGCAGATATTGTCCTCTTTGGGCTTTCTTTTCCGAGCTTCCCCTCAAGGTTTTAAAATGCGTCTACTAAGGAGAGGTTTTCACATCCTTATAAGGAATGCTTTGTTCCTCTCTCCAACCAATGTGGGAACTCACAATCCACTCCCCTTGGGGCTCAGTGTCCTCGCTGGCACATCGCTTGGTGTCTGCCTCTGATACCATTTGTAACAACCCAAGTCCACCGCTAGCAAATATTGTCCTCTTTGGGCTTTCCCTTCTGGACTTCCCCTCAAGGTTTTAAAACACGTTCACTAAAGAGAGGTTTCCACATTCTTATAAGGAATGCTTCGTTCTCCTCTCCAACTAATGTAAGAACTCACACATGATTTTAAAAGTCAAAATTTCGTTCATATAGTTTGATAAAACCTCATAATAGATCCTATAATTTGATAAAACCCTTATAATTTCATCACTATTTATGAGGATTTTATCAAACCATTGGGATGAATTCAAACTTTTAAACCATAGGACTAAATTTTAAGTTTTGACCGATCATAGGGATGAAATTTGTAATTCAACGTATCCTTTGCCTCTGTTTCTCCAAGCCTGTTCTCTAATCAACACTTTCACCATTTCAATTGCTTCTAATGATGTTGTTCCTATGTAGGAAATTGTGCATCATTTTGACGTACCAATATTGCGGAACTTTAGGAAGGGCTGTAGACTTAATGTTGAGAGGTTTTCTAAACTTCAGGTATGCATTTGTTCAAAAAGCATCCACTTATTAAGCTCATATTTCTGTAACTACTTAAATTAAGTGTGACAAAATATACCTCTGATCACAATAATTTTTCATAATTAAAGACCAACCAGCTAAAATCAATTTTTAAAGGGTTCTGTAGTTGCTTAGGTGGACAATTTATCCCACTTTTGAGTTTTTGACCATAGACTCCTGAGTCATTCGGTTTCGTAGTTGTCTAGAAGATTGTTGGGTCAATAGGTAAATGTTCCATAAGATGAAGTATTTTTCTCTATTGAATTGAAAAATCTTCGAATTGTCTCATTATTAACTTCTTTTTTTCCTACACTCTGGATGAAGGCAGATGTTTCAAAGGGAATTGGCAATGGAATCTCAATCATCGACAATGCTTGAGAGTAATTTGTTCTCTGATTCAACATTCTTTATAATCTCAATGCATTTTCATTAATTTTGTGGATGATATGTTTCGAGTGATCGGTACGTTATGACTTAAAGTTAAAAATATAGACATGTTGATTCACAAATTTATCAATACCTCTGTAAACTAGATTTGATACATAAATTAATAATCTATATTCATACATACAGTGCAAGGTATATCAAACTAGATTCAACACATAACTCATTAAACTAGGTGACTCAATGAACCTCCAGCCCATGATGCAACAGTCGGTATCTGCTGCCATAGTCATCGTTTTCAACTGTCATGAGCATTGCTGTTCTTGTCACCATCAGCTGTCGTCGTGGGGTTTTCATTTTGTTTTTTTCTCTCGTCTTTGGGTTTTACTTTCTTTGTTGTCTTGCCGTCACCTTCTTCCATTGTTCTTGCATTGTGTTTGCAGTTGCTGCTAGTCGGTGTCGTCGTCCTTGTCGCCATCTGCTGTCGTGTTTTTCGATTTTTTTTGGGTTTTCCTCTCCCCTATCTGTTTACTTCCCTTGTTGCCAGATGTTCTTCTATGCCATCCTTCACTGTCTCCAAATTCTTTTTTACTGAAGGTCAGATCATTGATTTTCTGCTTCGGTTGGGCTCTCCTTATCTTTAAGTCACCGTGCTTTGGTTTTCTGCATTTGGTTTGAAGACGAGCATTTCAAAAGCTCTAGTTTCTTTATTTCAAGATTGTAATAACGAGCCTTCTCTTCCTCCTTAAGTTCTATGCAATTTGGATTCATGTGTGAAGTTCCTACCTTTGTTGATGGCATCCGTGGTTGGGCTTCATTTTATTTATTGCAGTTTCCTATCATTGGTCAAGTTCTTTCTTTCTCGAGGCTTTCGGATCAGTGCTTTTGTTCTGGGTTCTAACTTTTATGTTGGTCGTCTCTTTCTCCTCGTGAAATAGCGAAAAGCTTAATGTTTGTTATTCATGTTGTGTTCTTTCTTCAGTATAATCAAAACATATACTCAACAAAACTTTATATTCTTTAGTGGTGAATGTTTGAAGAGCATTTTTTATTATGCAGGTTGTCAACCAGAAAAAGGCCTACCATTATTTGTATCTGCTTTCTCATCAGGGCAACTTTTATGGCTGATTTCTGCTGAATCAGTATTTGCTAGGGAAGAAATCAAAACGAATGCAGTTTACGAGATCGGGGAGTTATTTGAATTAGGAATACAGTTATCTTATCTATTAATACTATTAGGTCTTCTTGGGGTTGGAACCTTCTTCGTGATACGTCAAGTTCTTGTTCGTAGAGAACTCGATCTTTCTGCTAAAGAACTGCAAGTAAGAATCCACATTTACAGATTGTGTAATATGTAAAAAGTGGAAAGAGATCTAAAAGATCTTTTTCCTCTCAACAATGGAGGTGAACTTAGATTAATGAAATATTAATATTTCTTCGAATATTGATATTTCTATTCAAGGACATGAATTCATCCATTTAGATTGGGATGATTCTAAAGGGAAAGGGAGGTGCCCATGAACTAACGGCTCAAGCCCACTGCTAGCAAATATTGTCTTCTTTGGGCTTTCCCTTTTGGGCTTCTCCTCAAAGTTTTTAAAACGGATATGCTAGGGAGAAGTTTTCACACCCTTATAAAGAAATGCTTAGTTCTCCTCCCCAATTGGTGTAGGACCTCACAAACCACCCCTCTTCAGGGTCTAGCGTCCTTACTGGCACACCGCCTCATGTCCACCCCTGTTGGCACATCGCCCGTTGTCTGGCTCTGATACCATTTGTAACGGCCCAAGCCTACCGCTAACAGATATTGTCCTTTTTGGGTTTTCCCTTTCGGGCTTTCCCTCAAGGTTTTTAAAACGCGTCTGCTTAGGAGATGTCTCCACACCCTTATAAAGAATGCTTAGTTCTCCTCCCCAACCAATGTGGGATATACTGAATTTTTAAACGAAAACTATTCATTTGAAATCACCCCATGAAGTAGGTGATTGGCTGAGGTCATTGATTGTCTAGCTTTGCTAATGCGCTTTCCATTCTCATTATTTGTTGGTCAGGAACAAGTGAGAAGTGGTGATGCCAGTGCTATGGAGTACTTCGAACTTGGTGCAGTGATGCTGAGGAGGAAGTTTTATCCTGCTGCCACGAAGTTTTTGCTTCAGGCAATCGATAAGTGGGACGGGGATGATCAAGATCTTGCGCAGGTTTGATACACTCTAGCTCACTGATTTCTGATTGTTGGAATATCAAGAACATCCAATCATTTGATAATCTGCTTTGTTTTCGTTCATTTTAATTGAAACTGGATAGAATGTATCAATAACACGCTTCGTCGTGTTTAGCTTTTCGAAATCTTTTGTTCTCTCATCCAGTTTCATATTCCGTGTGTTCTCAATCGAGCATTAGTTGACTTGTTGAGTTGATCGAGGGTCGATATTTAATGATATCATTGTTACAGCTTGTATCGTTTATGTTTTCAGGTTTACAACGCGCTCGGGGTTAGTTATGTGCGTGACGAAAAGCTGGACAAGGGAATTACCCAGTTTGAAACTGCTGTAAAGCTTCAACCTGGGTATGTTACAGCTTGGAACAATCTTGGAGATGCATATGAGAAAAAGAAAGAATACACGTCTGCTCTGAAAGCTTTCGAAGAAGTTCTTCTATTCGACCCGAACAACAAACTTGCTCGGCCAAGACGAGATGCGTTGAAGGACCGTGTGGAGATGTACAAAGGAGTTCCTGTGAAATCTAAGAACAAATGATGATCATGTCCCTGGTTTTCTGCCGATTTTGTTGAAAATGAGAATTTACATTCATTAATGTATTAGATTATATTAGAGTTATGAATCCGATGTTGCTGTGTATGGTAACTAAAAAAGTATACATAATTGAATGTGTAGCTTTGTTTTCTAAAATATTTGCAAGGGCACCTGGAAAAGGGACATT

mRNA sequence

ACAATAAACGGTTGCCTTCCTTCTATCAATTTGATTTTTACCATTATCTTCTGGACACTCACACCTTCTTTCTGCCAAAACCATATCAACAATTTTCAGAAGTTTCAGATCAACAAACCTCAAATTGAGCGCTGAAAATCGCAGAAAATGGCTTTACAGACGAGTTTGTGTCTTCATCGTTCACCATCTCTTTCTCCTTCTCCTTCTCATTCTTTCCTCCCATTTGGGTCTCTCCAGCTCAAGCCTCAGAATCTCGTTCTTCAGGAAATTGTGCATCATTTTGACGTACCAATATTGCGGAACTTTAGGAAGGGCTGTAGACTTAATGTTGAGAGGTTTTCTAAACTTCAGGCAGATGTTTCAAAGGGAATTGGCAATGGAATCTCAATCATCGACAATGCTTGAGAGTTGTCAACCAGAAAAAGGCCTACCATTATTTGTATCTGCTTTCTCATCAGGGCAACTTTTATGGCTGATTTCTGCTGAATCAGTATTTGCTAGGGAAGAAATCAAAACGAATGCAGTTTACGAGATCGGGGAGTTATTTGAATTAGGAATACAGTTATCTTATCTATTAATACTATTAGGTCTTCTTGGGGTTGGAACCTTCTTCGTGATACGTCAAGTTCTTGTTCGTAGAGAACTCGATCTTTCTGCTAAAGAACTGCAAGAACAAGTGAGAAGTGGTGATGCCAGTGCTATGGAGTACTTCGAACTTGGTGCAGTGATGCTGAGGAGGAAGTTTTATCCTGCTGCCACGAAGTTTTTGCTTCAGGCAATCGATAAGTGGGACGGGGATGATCAAGATCTTGCGCAGGTTTACAACGCGCTCGGGGTTAGTTATGTGCGTGACGAAAAGCTGGACAAGGGAATTACCCAGTTTGAAACTGCTGTAAAGCTTCAACCTGGGTATGTTACAGCTTGGAACAATCTTGGAGATGCATATGAGAAAAAGAAAGAATACACGTCTGCTCTGAAAGCTTTCGAAGAAGTTCTTCTATTCGACCCGAACAACAAACTTGCTCGGCCAAGACGAGATGCGTTGAAGGACCGTGTGGAGATGTACAAAGGAGTTCCTGTGAAATCTAAGAACAAATGATGATCATGTCCCTGGTTTTCTGCCGATTTTGTTGAAAATGAGAATTTACATTCATTAATGTATTAGATTATATTAGAGTTATGAATCCGATGTTGCTGTGTATGGTAACTAAAAAAGTATACATAATTGAATGTGTAGCTTTGTTTTCTAAAATATTTGCAAGGGCACCTGGAAAAGGGACATT

Coding sequence (CDS)

ATGGCTTTACAGACGAGTTTGTGTCTTCATCGTTCACCATCTCTTTCTCCTTCTCCTTCTCATTCTTTCCTCCCATTTGGGTCTCTCCAGCTCAAGCCTCAGAATCTCGTTCTTCAGGAAATTGTGCATCATTTTGACGTACCAATATTGCGGAACTTTAGGAAGGGCTGTAGACTTAATGTTGAGAGGTTTTCTAAACTTCAGGCAGATGTTTCAAAGGGAATTGGCAATGGAATCTCAATCATCGACAATGCTTGA

Protein sequence

MALQTSLCLHRSPSLSPSPSHSFLPFGSLQLKPQNLVLQEIVHHFDVPILRNFRKGCRLNVERFSKLQADVSKGIGNGISIIDNA
Homology
[Close]
BLAST of Cp4.1LG06g09380.1 vs. TrEMBL
Match: A0A0A0K4L3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G284440 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-22
Identity = 57/68 (83.82%), Postives = 59/68 (86.76%), Query Frame = 1 

Query: 1  MALQTSLCLHRSPSLSPSPSHSFLPFGSLQLKPQNLVLQEIVHHFDVPILRNFRKGCRLN 60
          MALQTSL LHRSP  SP  SHSFLPFGSLQLKP NL+LQEIVHHFDVPIL+  RKGCRLN
Sbjct: 1  MALQTSLSLHRSPPFSP--SHSFLPFGSLQLKPHNLLLQEIVHHFDVPILQTVRKGCRLN 60

Query: 61 VERFSKLQ 69
          V RFSKLQ
Sbjct: 61 VRRFSKLQ 66

[Close]
BLAST of Cp4.1LG06g09380.1 vs. NCBI nr
Match: gi|659123062|ref|XP_008461469.1| (PREDICTED: uncharacterized protein ycf37 isoform X1 [Cucumis melo])

HSP 1 Score: 115.9 bits (289), Expect = 3.4e-23
Identity = 58/68 (85.29%), Postives = 60/68 (88.24%), Query Frame = 1 

Query: 1  MALQTSLCLHRSPSLSPSPSHSFLPFGSLQLKPQNLVLQEIVHHFDVPILRNFRKGCRLN 60
          MALQTSL LHRSPS +P  SHSFLPFGSLQLKP NL+LQEIVHHFDVPILR  RKGCRLN
Sbjct: 1  MALQTSLSLHRSPSFAP--SHSFLPFGSLQLKPHNLLLQEIVHHFDVPILRTVRKGCRLN 60

Query: 61 VERFSKLQ 69
          V RFSKLQ
Sbjct: 61 VRRFSKLQ 66

[Close]
BLAST of Cp4.1LG06g09380.1 vs. NCBI nr
Match: gi|449465368|ref|XP_004150400.1| (PREDICTED: uncharacterized protein ycf37 isoform X1 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 1.7e-22
Identity = 57/68 (83.82%), Postives = 59/68 (86.76%), Query Frame = 1 

Query: 1  MALQTSLCLHRSPSLSPSPSHSFLPFGSLQLKPQNLVLQEIVHHFDVPILRNFRKGCRLN 60
          MALQTSL LHRSP  SP  SHSFLPFGSLQLKP NL+LQEIVHHFDVPIL+  RKGCRLN
Sbjct: 1  MALQTSLSLHRSPPFSP--SHSFLPFGSLQLKPHNLLLQEIVHHFDVPILQTVRKGCRLN 60

Query: 61 VERFSKLQ 69
          V RFSKLQ
Sbjct: 61 VRRFSKLQ 66

The following BLAST results are available for this feature:
BLAST of Cp4.1LG06g09380.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG06g09380.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K4L3_CUCSA1.2e-2283.82Uncharacterized protein OS=Cucumis sativus GN=Csa_7G284440 PE=4 SV=1[more]
BLAST of Cp4.1LG06g09380.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG06g09380.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659123062|ref|XP_008461469.1|3.4e-2385.29PREDICTED: uncharacterized protein ycf37 isoform X1 [Cucumis melo][more]
gi|449465368|ref|XP_004150400.1|1.7e-2283.82PREDICTED: uncharacterized protein ycf37 isoform X1 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG06g09380Cp4.1LG06g09380gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG06g09380.1Cp4.1LG06g09380.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG06g09380.1:five_prime_utr:001Cp4.1LG06g09380.1:five_prime_utr:001five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG06g09380.1:cds:003Cp4.1LG06g09380.1:cds:003CDS
Cp4.1LG06g09380.1:cds:002Cp4.1LG06g09380.1:cds:002CDS
Cp4.1LG06g09380.1:cds:001Cp4.1LG06g09380.1:cds:001CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG06g09380.1:three_prime_utr:004Cp4.1LG06g09380.1:three_prime_utr:004three_prime_UTR
Cp4.1LG06g09380.1:three_prime_utr:003Cp4.1LG06g09380.1:three_prime_utr:003three_prime_UTR
Cp4.1LG06g09380.1:three_prime_utr:002Cp4.1LG06g09380.1:three_prime_utr:002three_prime_UTR
Cp4.1LG06g09380.1:three_prime_utr:001Cp4.1LG06g09380.1:three_prime_utr:001three_prime_UTR