Cp4.1LG06g09380 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG06g09380
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG06 : 7457796 .. 7462953 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAATAAACGGTTGCCTTCCTTCTATCAATTTGATTTTTACCATTATCTTCTGGACACTCACACCTTCTTTCTGCCAAAACCATATCAACAATTTTCAGAAGTTTCAGATCAACAAACCTCAAATTGAGCGCTGAAAATCGCAGAAAATGGCTTTACAGACGAGTTTGTGTCTTCATCGTTCACCATCTCTTTCTCCTTCTCCTTCTCATTCTTTCCTCCCATTTGGGTCTCTCCAGCTCAAGCCTCAGAATCTCGTTCTTCAGGTGAGATTTCATCTCTTCTTCTTATGGATTATTGGATTTCTCTCATGGATGATTGATTCTGTTTTCTTTAACATATAAAATATGGTGTTGTTCTTGTATTATGCTAGTGAGCTTCAGTTGTTGAATCCTGGTTGAAATTTGAGGAAGTGGAATAGGTTATGGCTGGAAATTCGAATTCTATTTTTGAATTTTCGTATTTTAAATTTTGAGGAACTGTGTTTTGTTCTTGAATTTCATTCATAAGTCCTGTTTGAGATGAACTCTTTTTAGATTTCTATCCTGAAAAAAATGAAATCTGCCGGTTCTTAAAAAGTTGGAAAGAAACTTTGAGGCAGTTTGAAATGATCGTTTCTGAGTTTTGATTTTAAAGAAGAAGCACTCTTTCCACTGAATGAAGGTGCATTGAAGTGTTTTTAGAAATTTCAAAGTTACTTTGATCGTAAAAGAAAACTCAACATGACTCTGTTTGTGTTCATTTAAGCACAAAAGTTCTGTTTTGGTCATGATATGTTTCAAGTTCTTAGTGAAAATTCTTCTGATGCTACATGATCTGTCAAGTTAGGTTATGAATTTTGTAATGGTCGAATTCCTGAAATCATTTTAGTCCGAACGAGTTCGATATATTAATTGTTTGTCAAAATCATAATGTTTAGATTCAACAAGAGCCTGAAAATTATGTAATTATTTGTTTCTTGGTAGCACTTTTTTTTATTACAGTATCTGTAATGTTTTTTTGGTTAAATTATAAAGTTAGGTTCTATGGTTTGGAGAAAGTTCAAGTTTAGTTCACATGGTATAACACCTCAAGCCCACCACTAGCAGATATTGTCCTCTTTGGGCTTTCTTTTCCGAGCTTCCCCTCAAGGTTTTAAAATGCGTCTACTAAGGAGAGGTTTTCACATCCTTATAAGGAATGCTTTGTTCCTCTCTCCAACCAATGTGGGAACTCACAATCCACTCCCCTTGGGGCTCAGTGTCCTCGCTGGCACATCGCTTGGTGTCTGCCTCTGATACCATTTGTAACAACCCAAGTCCACCGCTAGCAAATATTGTCCTCTTTGGGCTTTCCCTTCTGGACTTCCCCTCAAGGTTTTAAAACACGTTCACTAAAGAGAGGTTTCCACATTCTTATAAGGAATGCTTCGTTCTCCTCTCCAACTAATGTAAGAACTCACACATGATTTTAAAAGTCAAAATTTCGTTCATATAGTTTGATAAAACCTCATAATAGATCCTATAATTTGATAAAACCCTTATAATTTCATCACTATTTATGAGGATTTTATCAAACCATTGGGATGAATTCAAACTTTTAAACCATAGGACTAAATTTTAAGTTTTGACCGATCATAGGGATGAAATTTGTAATTCAACGTATCCTTTGCCTCTGTTTCTCCAAGCCTGTTCTCTAATCAACACTTTCACCATTTCAATTGCTTCTAATGATGTTGTTCCTATGTAGGAAATTGTGCATCATTTTGACGTACCAATATTGCGGAACTTTAGGAAGGGCTGTAGACTTAATGTTGAGAGGTTTTCTAAACTTCAGGTATGCATTTGTTCAAAAAGCATCCACTTATTAAGCTCATATTTCTGTAACTACTTAAATTAAGTGTGACAAAATATACCTCTGATCACAATAATTTTTCATAATTAAAGACCAACCAGCTAAAATCAATTTTTAAAGGGTTCTGTAGTTGCTTAGGTGGACAATTTATCCCACTTTTGAGTTTTTGACCATAGACTCCTGAGTCATTCGGTTTCGTAGTTGTCTAGAAGATTGTTGGGTCAATAGGTAAATGTTCCATAAGATGAAGTATTTTTCTCTATTGAATTGAAAAATCTTCGAATTGTCTCATTATTAACTTCTTTTTTTCCTACACTCTGGATGAAGGCAGATGTTTCAAAGGGAATTGGCAATGGAATCTCAATCATCGACAATGCTTGAGAGTAATTTGTTCTCTGATTCAACATTCTTTATAATCTCAATGCATTTTCATTAATTTTGTGGATGATATGTTTCGAGTGATCGGTACGTTATGACTTAAAGTTAAAAATATAGACATGTTGATTCACAAATTTATCAATACCTCTGTAAACTAGATTTGATACATAAATTAATAATCTATATTCATACATACAGTGCAAGGTATATCAAACTAGATTCAACACATAACTCATTAAACTAGGTGACTCAATGAACCTCCAGCCCATGATGCAACAGTCGGTATCTGCTGCCATAGTCATCGTTTTCAACTGTCATGAGCATTGCTGTTCTTGTCACCATCAGCTGTCGTCGTGGGGTTTTCATTTTGTTTTTTTCTCTCGTCTTTGGGTTTTACTTTCTTTGTTGTCTTGCCGTCACCTTCTTCCATTGTTCTTGCATTGTGTTTGCAGTTGCTGCTAGTCGGTGTCGTCGTCCTTGTCGCCATCTGCTGTCGTGTTTTTCGATTTTTTTTGGGTTTTCCTCTCCCCTATCTGTTTACTTCCCTTGTTGCCAGATGTTCTTCTATGCCATCCTTCACTGTCTCCAAATTCTTTTTTACTGAAGGTCAGATCATTGATTTTCTGCTTCGGTTGGGCTCTCCTTATCTTTAAGTCACCGTGCTTTGGTTTTCTGCATTTGGTTTGAAGACGAGCATTTCAAAAGCTCTAGTTTCTTTATTTCAAGATTGTAATAACGAGCCTTCTCTTCCTCCTTAAGTTCTATGCAATTTGGATTCATGTGTGAAGTTCCTACCTTTGTTGATGGCATCCGTGGTTGGGCTTCATTTTATTTATTGCAGTTTCCTATCATTGGTCAAGTTCTTTCTTTCTCGAGGCTTTCGGATCAGTGCTTTTGTTCTGGGTTCTAACTTTTATGTTGGTCGTCTCTTTCTCCTCGTGAAATAGCGAAAAGCTTAATGTTTGTTATTCATGTTGTGTTCTTTCTTCAGTATAATCAAAACATATACTCAACAAAACTTTATATTCTTTAGTGGTGAATGTTTGAAGAGCATTTTTTATTATGCAGGTTGTCAACCAGAAAAAGGCCTACCATTATTTGTATCTGCTTTCTCATCAGGGCAACTTTTATGGCTGATTTCTGCTGAATCAGTATTTGCTAGGGAAGAAATCAAAACGAATGCAGTTTACGAGATCGGGGAGTTATTTGAATTAGGAATACAGTTATCTTATCTATTAATACTATTAGGTCTTCTTGGGGTTGGAACCTTCTTCGTGATACGTCAAGTTCTTGTTCGTAGAGAACTCGATCTTTCTGCTAAAGAACTGCAAGTAAGAATCCACATTTACAGATTGTGTAATATGTAAAAAGTGGAAAGAGATCTAAAAGATCTTTTTCCTCTCAACAATGGAGGTGAACTTAGATTAATGAAATATTAATATTTCTTCGAATATTGATATTTCTATTCAAGGACATGAATTCATCCATTTAGATTGGGATGATTCTAAAGGGAAAGGGAGGTGCCCATGAACTAACGGCTCAAGCCCACTGCTAGCAAATATTGTCTTCTTTGGGCTTTCCCTTTTGGGCTTCTCCTCAAAGTTTTTAAAACGGATATGCTAGGGAGAAGTTTTCACACCCTTATAAAGAAATGCTTAGTTCTCCTCCCCAATTGGTGTAGGACCTCACAAACCACCCCTCTTCAGGGTCTAGCGTCCTTACTGGCACACCGCCTCATGTCCACCCCTGTTGGCACATCGCCCGTTGTCTGGCTCTGATACCATTTGTAACGGCCCAAGCCTACCGCTAACAGATATTGTCCTTTTTGGGTTTTCCCTTTCGGGCTTTCCCTCAAGGTTTTTAAAACGCGTCTGCTTAGGAGATGTCTCCACACCCTTATAAAGAATGCTTAGTTCTCCTCCCCAACCAATGTGGGATATACTGAATTTTTAAACGAAAACTATTCATTTGAAATCACCCCATGAAGTAGGTGATTGGCTGAGGTCATTGATTGTCTAGCTTTGCTAATGCGCTTTCCATTCTCATTATTTGTTGGTCAGGAACAAGTGAGAAGTGGTGATGCCAGTGCTATGGAGTACTTCGAACTTGGTGCAGTGATGCTGAGGAGGAAGTTTTATCCTGCTGCCACGAAGTTTTTGCTTCAGGCAATCGATAAGTGGGACGGGGATGATCAAGATCTTGCGCAGGTTTGATACACTCTAGCTCACTGATTTCTGATTGTTGGAATATCAAGAACATCCAATCATTTGATAATCTGCTTTGTTTTCGTTCATTTTAATTGAAACTGGATAGAATGTATCAATAACACGCTTCGTCGTGTTTAGCTTTTCGAAATCTTTTGTTCTCTCATCCAGTTTCATATTCCGTGTGTTCTCAATCGAGCATTAGTTGACTTGTTGAGTTGATCGAGGGTCGATATTTAATGATATCATTGTTACAGCTTGTATCGTTTATGTTTTCAGGTTTACAACGCGCTCGGGGTTAGTTATGTGCGTGACGAAAAGCTGGACAAGGGAATTACCCAGTTTGAAACTGCTGTAAAGCTTCAACCTGGGTATGTTACAGCTTGGAACAATCTTGGAGATGCATATGAGAAAAAGAAAGAATACACGTCTGCTCTGAAAGCTTTCGAAGAAGTTCTTCTATTCGACCCGAACAACAAACTTGCTCGGCCAAGACGAGATGCGTTGAAGGACCGTGTGGAGATGTACAAAGGAGTTCCTGTGAAATCTAAGAACAAATGATGATCATGTCCCTGGTTTTCTGCCGATTTTGTTGAAAATGAGAATTTACATTCATTAATGTATTAGATTATATTAGAGTTATGAATCCGATGTTGCTGTGTATGGTAACTAAAAAAGTATACATAATTGAATGTGTAGCTTTGTTTTCTAAAATATTTGCAAGGGCACCTGGAAAAGGGACATT

mRNA sequence

ACAATAAACGGTTGCCTTCCTTCTATCAATTTGATTTTTACCATTATCTTCTGGACACTCACACCTTCTTTCTGCCAAAACCATATCAACAATTTTCAGAAGTTTCAGATCAACAAACCTCAAATTGAGCGCTGAAAATCGCAGAAAATGGCTTTACAGACGAGTTTGTGTCTTCATCGTTCACCATCTCTTTCTCCTTCTCCTTCTCATTCTTTCCTCCCATTTGGGTCTCTCCAGCTCAAGCCTCAGAATCTCGTTCTTCAGGAAATTGTGCATCATTTTGACGTACCAATATTGCGGAACTTTAGGAAGGGCTGTAGACTTAATGTTGAGAGGTTTTCTAAACTTCAGGCAGATGTTTCAAAGGGAATTGGCAATGGAATCTCAATCATCGACAATGCTTGAGAGTTGTCAACCAGAAAAAGGCCTACCATTATTTGTATCTGCTTTCTCATCAGGGCAACTTTTATGGCTGATTTCTGCTGAATCAGTATTTGCTAGGGAAGAAATCAAAACGAATGCAGTTTACGAGATCGGGGAGTTATTTGAATTAGGAATACAGTTATCTTATCTATTAATACTATTAGGTCTTCTTGGGGTTGGAACCTTCTTCGTGATACGTCAAGTTCTTGTTCGTAGAGAACTCGATCTTTCTGCTAAAGAACTGCAAGAACAAGTGAGAAGTGGTGATGCCAGTGCTATGGAGTACTTCGAACTTGGTGCAGTGATGCTGAGGAGGAAGTTTTATCCTGCTGCCACGAAGTTTTTGCTTCAGGCAATCGATAAGTGGGACGGGGATGATCAAGATCTTGCGCAGGTTTACAACGCGCTCGGGGTTAGTTATGTGCGTGACGAAAAGCTGGACAAGGGAATTACCCAGTTTGAAACTGCTGTAAAGCTTCAACCTGGGTATGTTACAGCTTGGAACAATCTTGGAGATGCATATGAGAAAAAGAAAGAATACACGTCTGCTCTGAAAGCTTTCGAAGAAGTTCTTCTATTCGACCCGAACAACAAACTTGCTCGGCCAAGACGAGATGCGTTGAAGGACCGTGTGGAGATGTACAAAGGAGTTCCTGTGAAATCTAAGAACAAATGATGATCATGTCCCTGGTTTTCTGCCGATTTTGTTGAAAATGAGAATTTACATTCATTAATGTATTAGATTATATTAGAGTTATGAATCCGATGTTGCTGTGTATGGTAACTAAAAAAGTATACATAATTGAATGTGTAGCTTTGTTTTCTAAAATATTTGCAAGGGCACCTGGAAAAGGGACATT

Coding sequence (CDS)

ATGGCTTTACAGACGAGTTTGTGTCTTCATCGTTCACCATCTCTTTCTCCTTCTCCTTCTCATTCTTTCCTCCCATTTGGGTCTCTCCAGCTCAAGCCTCAGAATCTCGTTCTTCAGGAAATTGTGCATCATTTTGACGTACCAATATTGCGGAACTTTAGGAAGGGCTGTAGACTTAATGTTGAGAGGTTTTCTAAACTTCAGGCAGATGTTTCAAAGGGAATTGGCAATGGAATCTCAATCATCGACAATGCTTGA

Protein sequence

MALQTSLCLHRSPSLSPSPSHSFLPFGSLQLKPQNLVLQEIVHHFDVPILRNFRKGCRLNVERFSKLQADVSKGIGNGISIIDNA
Homology
[Close]
BLAST of Cp4.1LG06g09380 vs. TrEMBL
Match: A0A0A0K4L3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G284440 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-22
Identity = 57/68 (83.82%), Postives = 59/68 (86.76%), Query Frame = 1 

Query: 1  MALQTSLCLHRSPSLSPSPSHSFLPFGSLQLKPQNLVLQEIVHHFDVPILRNFRKGCRLN 60
          MALQTSL LHRSP  SP  SHSFLPFGSLQLKP NL+LQEIVHHFDVPIL+  RKGCRLN
Sbjct: 1  MALQTSLSLHRSPPFSP--SHSFLPFGSLQLKPHNLLLQEIVHHFDVPILQTVRKGCRLN 60

Query: 61 VERFSKLQ 69
          V RFSKLQ
Sbjct: 61 VRRFSKLQ 66

[Close]
BLAST of Cp4.1LG06g09380 vs. NCBI nr
Match: gi|659123062|ref|XP_008461469.1| (PREDICTED: uncharacterized protein ycf37 isoform X1 [Cucumis melo])

HSP 1 Score: 115.9 bits (289), Expect = 3.4e-23
Identity = 58/68 (85.29%), Postives = 60/68 (88.24%), Query Frame = 1 

Query: 1  MALQTSLCLHRSPSLSPSPSHSFLPFGSLQLKPQNLVLQEIVHHFDVPILRNFRKGCRLN 60
          MALQTSL LHRSPS +P  SHSFLPFGSLQLKP NL+LQEIVHHFDVPILR  RKGCRLN
Sbjct: 1  MALQTSLSLHRSPSFAP--SHSFLPFGSLQLKPHNLLLQEIVHHFDVPILRTVRKGCRLN 60

Query: 61 VERFSKLQ 69
          V RFSKLQ
Sbjct: 61 VRRFSKLQ 66

[Close]
BLAST of Cp4.1LG06g09380 vs. NCBI nr
Match: gi|449465368|ref|XP_004150400.1| (PREDICTED: uncharacterized protein ycf37 isoform X1 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 1.7e-22
Identity = 57/68 (83.82%), Postives = 59/68 (86.76%), Query Frame = 1 

Query: 1  MALQTSLCLHRSPSLSPSPSHSFLPFGSLQLKPQNLVLQEIVHHFDVPILRNFRKGCRLN 60
          MALQTSL LHRSP  SP  SHSFLPFGSLQLKP NL+LQEIVHHFDVPIL+  RKGCRLN
Sbjct: 1  MALQTSLSLHRSPPFSP--SHSFLPFGSLQLKPHNLLLQEIVHHFDVPILQTVRKGCRLN 60

Query: 61 VERFSKLQ 69
          V RFSKLQ
Sbjct: 61 VRRFSKLQ 66

The following BLAST results are available for this feature:
BLAST of Cp4.1LG06g09380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG06g09380 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K4L3_CUCSA1.2e-2283.82Uncharacterized protein OS=Cucumis sativus GN=Csa_7G284440 PE=4 SV=1[more]
BLAST of Cp4.1LG06g09380 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG06g09380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659123062|ref|XP_008461469.1|3.4e-2385.29PREDICTED: uncharacterized protein ycf37 isoform X1 [Cucumis melo][more]
gi|449465368|ref|XP_004150400.1|1.7e-2283.82PREDICTED: uncharacterized protein ycf37 isoform X1 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0048564 photosystem I assembly
cellular_component GO:0005575 cellular_component
cellular_component GO:0009535 chloroplast thylakoid membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g09380.1Cp4.1LG06g09380.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG06g09380CmaCh09G011450Cucurbita maxima (Rimu)cmacpeB063
Cp4.1LG06g09380CmoCh09G011560Cucurbita moschata (Rifu)cmocpeB036
Cp4.1LG06g09380Csa7G284440Cucumber (Chinese Long) v2cpecuB801
Cp4.1LG06g09380ClCG09G010420Watermelon (Charleston Gray)cpewcgB690
Cp4.1LG06g09380CSPI07G12150Wild cucumber (PI 183967)cpecpiB801
Cp4.1LG06g09380MELO3C023667.2Melon (DHL92) v3.6.1cpemedB845
Cp4.1LG06g09380Bhi09G001325Wax gourdcpewgoB0991
Cp4.1LG06g09380Carg27509Silver-seed gourdcarcpeB1411
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG06g09380Watermelon (97103) v1cpewmB754
Cp4.1LG06g09380Melon (DHL92) v3.5.1cpemeB712
Cp4.1LG06g09380Melon (DHL92) v3.5.1cpemeB714
Cp4.1LG06g09380Cucumber (Gy14) v2cgybcpeB982
Cp4.1LG06g09380Melon (DHL92) v3.6.1cpemedB848
Cp4.1LG06g09380Cucumber (Chinese Long) v3cpecucB0990
Cp4.1LG06g09380Cucurbita pepo (Zucchini)cpecpeB460
Cp4.1LG06g09380Cucurbita maxima (Rimu)cmacpeB060
Cp4.1LG06g09380Cucurbita maxima (Rimu)cmacpeB505
Cp4.1LG06g09380Cucurbita moschata (Rifu)cmocpeB034
Cp4.1LG06g09380Cucurbita moschata (Rifu)cmocpeB464
Cp4.1LG06g09380Bottle gourd (USVL1VR-Ls)cpelsiB632
Cp4.1LG06g09380Bottle gourd (USVL1VR-Ls)cpelsiB634