Cp4.1LG06g09330.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG06g09330.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG06 : 7475490 .. 7476020 (+)
Sequence length	531

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTTGAAGACGATTTCAGTTTCCCCACCGCTTTAGAGCCGTTCAATCGCTGCGGCATCGATTCGCCGCCGCTCTGGCGCCTCTCTCCCACCGCATCGCCTATTTCTTACCGTCAAAAAACAGCCTCCAATCGGAGTTTCAGAGACGATCAGAAGAGCGATCGGTTTGCGTCGGTGAGATTCTCGGCGTCGTTACAGAGGAGGAGGAGATTTTCGAGCGATGCGGCGATGGACGGCGAGGAGGAGGAGGAGGAGGTAGCGGCGGAGAAGATGGATGTGCTTTGGGAGAATTTCAACGAGGAGTTGTCGAGGAGTGGGAGATCTAGGTTGATGAAAACGGCGGAAATGGAGGAGATTGAGATTGTGAAAGCGCGGCGGCGGATGGCGGAATTGAATCTGTCGGAGACTTCCGGCGCGGTGGTGACGAGGAGGAAGGCGACGGGGAAGACGGCGTTTGTTAAGGCTTTGAAGAAGCTTTTCTTGTTGCATAACAATTCCCGCCGGAATCTGCAAACTCGATCACTGTGA

mRNA sequence

ATGGCGGTTGAAGACGATTTCAGTTTCCCCACCGCTTTAGAGCCGTTCAATCGCTGCGGCATCGATTCGCCGCCGCTCTGGCGCCTCTCTCCCACCGCATCGCCTATTTCTTACCGTCAAAAAACAGCCTCCAATCGGAGTTTCAGAGACGATCAGAAGAGCGATCGGTTTGCGTCGGTGAGATTCTCGGCGTCGTTACAGAGGAGGAGGAGATTTTCGAGCGATGCGGCGATGGACGGCGAGGAGGAGGAGGAGGAGGTAGCGGCGGAGAAGATGGATGTGCTTTGGGAGAATTTCAACGAGGAGTTGTCGAGGAGTGGGAGATCTAGGTTGATGAAAACGGCGGAAATGGAGGAGATTGAGATTGTGAAAGCGCGGCGGCGGATGGCGGAATTGAATCTGTCGGAGACTTCCGGCGCGGTGGTGACGAGGAGGAAGGCGACGGGGAAGACGGCGTTTGTTAAGGCTTTGAAGAAGCTTTTCTTGTTGCATAACAATTCCCGCCGGAATCTGCAAACTCGATCACTGTGA

Coding sequence (CDS)

ATGGCGGTTGAAGACGATTTCAGTTTCCCCACCGCTTTAGAGCCGTTCAATCGCTGCGGCATCGATTCGCCGCCGCTCTGGCGCCTCTCTCCCACCGCATCGCCTATTTCTTACCGTCAAAAAACAGCCTCCAATCGGAGTTTCAGAGACGATCAGAAGAGCGATCGGTTTGCGTCGGTGAGATTCTCGGCGTCGTTACAGAGGAGGAGGAGATTTTCGAGCGATGCGGCGATGGACGGCGAGGAGGAGGAGGAGGAGGTAGCGGCGGAGAAGATGGATGTGCTTTGGGAGAATTTCAACGAGGAGTTGTCGAGGAGTGGGAGATCTAGGTTGATGAAAACGGCGGAAATGGAGGAGATTGAGATTGTGAAAGCGCGGCGGCGGATGGCGGAATTGAATCTGTCGGAGACTTCCGGCGCGGTGGTGACGAGGAGGAAGGCGACGGGGAAGACGGCGTTTGTTAAGGCTTTGAAGAAGCTTTTCTTGTTGCATAACAATTCCCGCCGGAATCTGCAAACTCGATCACTGTGA

Protein sequence

MAVEDDFSFPTALEPFNRCGIDSPPLWRLSPTASPISYRQKTASNRSFRDDQKSDRFASVRFSASLQRRRRFSSDAAMDGEEEEEEVAAEKMDVLWENFNEELSRSGRSRLMKTAEMEEIEIVKARRRMAELNLSETSGAVVTRRKATGKTAFVKALKKLFLLHNNSRRNLQTRSL

Homology

[Close]

BLAST of Cp4.1LG06g09330.1 vs. TrEMBL
Match: A0A0A0K672_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G283910 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 2.8e-63
Identity = 141/176 (80.11%), Postives = 151/176 (85.80%), Query Frame = 1


Query: 1   MAVEDDFSFPTALEPFNRCGIDSPPLWRLSPTASPISYRQKTASNRSFRDDQKSDRFASV 60
           MAVE+DFSFPTALEPFNRCGIDSPPLW LSP+ASPISY Q+T+ + +FR D  SD   S 
Sbjct: 1   MAVEEDFSFPTALEPFNRCGIDSPPLWHLSPSASPISYPQQTSCDWNFR-DTASDGEISN 60

Query: 61  RF-SASLQRRRRFSSDAAMDGEEEEEEVAAEKMDVLWENFNEELSRSGRSRLMKTAEMEE 120
           RF SASLQRRRRF SDAA++ EEEEE  AAEKMDVLWENFNEELSRS RSRLMKTAE EE
Sbjct: 61  RFPSASLQRRRRFLSDAAVNCEEEEEAEAAEKMDVLWENFNEELSRSRRSRLMKTAETEE 120

Query: 121 IEIVKARRRMAELNLSETSGAVVTRRKATGKTAFVKALKKLFLLHNNSRRNLQTRS 176
            E VKARRRMAE NLSETSGA+ TRRK  GKTAFVK LKKLFL+HNNSRRNLQTRS
Sbjct: 121 NETVKARRRMAEFNLSETSGAMATRRKTMGKTAFVKVLKKLFLMHNNSRRNLQTRS 175

[Close]

BLAST of Cp4.1LG06g09330.1 vs. TrEMBL
Match: A0A061FJY8_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_036336 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-13
Identity = 69/171 (40.35%), Postives = 96/171 (56.14%), Query Frame = 1


Query: 1   MAVEDDFSFPT--ALEPFNRCGIDSPPLWRLSPTASPISYRQKTASNRSFRDDQKSDRFA 60
           MA  ++FSFPT  AL P   CGIDSPPLWRLSP ASP  +  + A   S R+++  D F 
Sbjct: 1   MASTEEFSFPTTAALYP---CGIDSPPLWRLSPAASPDVFLDRKAKECSTREEE--DCFP 60

Query: 61  SVRFSASLQRRRRFS---SDAAMDGEEEEEEVAAEKMDVLWENFNEELSRSGRSRLMKTA 120
             R     Q R+ FS     + +  ++   E   EKMD+LWE+FNEEL  S  SR   + 
Sbjct: 61  D-RPEKKHQERKSFSYVEKGSKVSSKKVAAEDEEEKMDLLWEDFNEELPTSRSSR--SSG 120

Query: 121 EMEEIEIVKARRRMAELNLSETSGAVVTRRKATGKTAFVKALKKLFLLHNN 167
           +M E+   +A      L LS+ + A+   R+  G   F++ L+KLFL+HN+
Sbjct: 121 DMVELGCAQA------LKLSKNNAAMFPPRR-PGMLVFMRVLRKLFLVHNS 156

[Close]

BLAST of Cp4.1LG06g09330.1 vs. TrEMBL
Match: B9SLG7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0686540 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.3e-11
Identity = 65/191 (34.03%), Postives = 100/191 (52.36%), Query Frame = 1


Query: 2   AVEDDFSFPT-ALEPFNRCGIDSPPLWRLSPTASP-----ISYRQKTASNRSFRDDQKSD 61
           A  DDF+FP  A +PF+  G+DSP LW LSP ASP         Q+    +   D  + +
Sbjct: 6   AAADDFTFPIFATDPFSS-GVDSPSLWHLSPAASPDHSCHAKPEQEQEREQGQEDSDQEE 65

Query: 62  RFASVRFSASLQRRRRFS--SDAAMDGEEEEEEVAAEKMDVLWENFNEELSRSGRSRLMK 121
            F          +R+ FS     +  GE ++ +   EKMD+LWE+FNEE++   RS+   
Sbjct: 66  DFQDCFPLYKPAQRKSFSWEEKGSKYGEVDDGDDKEEKMDMLWEDFNEEITSLKRSQSTS 125

Query: 122 --TAEMEEIEIVKARRRMAELNLSETSGAVVTRRK--ATGKTAFVKALKKLFLLHN---- 174
              ++ +    V    ++  + L++TS A+V+ +K    G   F+K LKKLFLLHN    
Sbjct: 126 RFDSDHDMANRVGCVHQLQSVKLNKTSTAMVSPKKPATAGFVVFIKVLKKLFLLHNSHHH 185

[Close]

BLAST of Cp4.1LG06g09330.1 vs. TrEMBL
Match: M5VI77_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022692mg PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.5e-11
Identity = 64/174 (36.78%), Postives = 84/174 (48.28%), Query Frame = 1


Query: 6   DFSFPTALEPFNRCGIDSPPLWRLSPTASPISYRQKTASNRSFRDDQKSDRFASVRFSAS 65
           DFSFPT   P   C IDSPPLWRLSP AS     Q  +      DD+  +   ++     
Sbjct: 5   DFSFPTHKFP---CTIDSPPLWRLSPAASSKVDDQNHSEEEEEEDDE--EEIVNINVKYC 64

Query: 66  LQRRRRFS------SDAAMDGEEEEEEVAAEKMDVLWENFNEEL-SRSGRSRLMK---TA 125
            QRR+ FS           D E  + +   EKMD+LWE+FNEEL SRS  +       + 
Sbjct: 65  DQRRKSFSYIERGTKMVEKDQESRDHDHGEEKMDMLWEDFNEELKSRSNTTSDYSGGLSR 124

Query: 126 EMEEIEIVKARRRMAELNLSETSGAVVTRRKATGKTAFVKALKKLFLLHNNSRR 170
           EM  +  VKA        L+ET+G      +     A +K LK+LF LHN+  +
Sbjct: 125 EMLHLGCVKA------FKLTETNGDHALSTRKPSVVAVMKVLKRLFFLHNSHHK 167

[Close]

BLAST of Cp4.1LG06g09330.1 vs. TrEMBL
Match: U5FEQ9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s11420g PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.6e-10
Identity = 62/182 (34.07%), Postives = 90/182 (49.45%), Query Frame = 1


Query: 5   DDFSFPTALEPFNRCGIDSPPLWRLSPTASPISYRQKTASNRS------------FRDDQ 64
           +DF+FP   +P + C IDSPPLW LSP ASP  Y ++T+   S            F++  
Sbjct: 4   EDFTFPIFTDPVS-CSIDSPPLWCLSPAASPDPYHEETSKESSTEGEERDQDEQVFKNSF 63

Query: 65  KSDRFASVRFSASLQRRRRFSSDAA----MDGEEEEEEVAAEKMDVLWENFN--EELSRS 124
            ++    +    S  RR    S A+     +G   ++E   EKMD+LWE+FN  E L+RS
Sbjct: 64  PTEPIKHLTQGKSFSRREELGSAASELVRRNGSLNDKE---EKMDMLWEDFNTEETLTRS 123

Query: 125 GRSRLMKTAEMEEIEIVKARRRMAELNLSETSGAVVTRRKATGKTAFVKALKKLFLLHNN 169
             S  +  +E   +  VKA      L LS+  G  +   +  G   F+  LK LFL+HN+
Sbjct: 124 HSSSRL-DSEAVHMGCVKA------LRLSKPKGTSIISARKPGLVVFMNVLKSLFLIHNS 174

[Close]

BLAST of Cp4.1LG06g09330.1 vs. NCBI nr
Match: gi|659123054|ref|XP_008461465.1| (PREDICTED: uncharacterized protein LOC103500054 isoform X1 [Cucumis melo])

HSP 1 Score: 253.1 bits (645), Expect = 3.7e-64
Identity = 142/178 (79.78%), Postives = 156/178 (87.64%), Query Frame = 1


Query: 1   MAVEDDFSFPTALEPFNRCGIDSPPLWRLSPTASPISYRQKTASNRSFRDDQKSDRFASV 60
           MAVEDDFSFPTALEPFNRCG+DSPPLWRLSP+ASPISYRQ+ + +R+FRD   SD   S 
Sbjct: 1   MAVEDDFSFPTALEPFNRCGVDSPPLWRLSPSASPISYRQQISCDRNFRDTA-SDGEISN 60

Query: 61  RF-SASLQRRRRFSSDAAMDGEEEEEE--VAAEKMDVLWENFNEELSRSGRSRLMKTAEM 120
           RF SAS QRRRRF SDAA++GEEEEEE    AEKMDVLWENFNEELSRS RSRLMKTAE+
Sbjct: 61  RFPSASFQRRRRFLSDAAVNGEEEEEEEEAVAEKMDVLWENFNEELSRSRRSRLMKTAEL 120

Query: 121 EEIEIVKARRRMAELNLSETSGAVVTRRKATGKTAFVKALKKLFLLHNNSRRNLQTRS 176
           EE EIVKAR+RMAELNL ETSGA+ T RKATGKTAFVK LKKLFL+H++SRRNLQTRS
Sbjct: 121 EENEIVKARQRMAELNLPETSGAMATGRKATGKTAFVKVLKKLFLMHSSSRRNLQTRS 177

[Close]

BLAST of Cp4.1LG06g09330.1 vs. NCBI nr
Match: gi|778730295|ref|XP_011659753.1| (PREDICTED: uncharacterized protein LOC105436259 [Cucumis sativus])

HSP 1 Score: 249.6 bits (636), Expect = 4.1e-63
Identity = 141/176 (80.11%), Postives = 151/176 (85.80%), Query Frame = 1


Query: 1   MAVEDDFSFPTALEPFNRCGIDSPPLWRLSPTASPISYRQKTASNRSFRDDQKSDRFASV 60
           MAVE+DFSFPTALEPFNRCGIDSPPLW LSP+ASPISY Q+T+ + +FR D  SD   S 
Sbjct: 1   MAVEEDFSFPTALEPFNRCGIDSPPLWHLSPSASPISYPQQTSCDWNFR-DTASDGEISN 60

Query: 61  RF-SASLQRRRRFSSDAAMDGEEEEEEVAAEKMDVLWENFNEELSRSGRSRLMKTAEMEE 120
           RF SASLQRRRRF SDAA++ EEEEE  AAEKMDVLWENFNEELSRS RSRLMKTAE EE
Sbjct: 61  RFPSASLQRRRRFLSDAAVNCEEEEEAEAAEKMDVLWENFNEELSRSRRSRLMKTAETEE 120

Query: 121 IEIVKARRRMAELNLSETSGAVVTRRKATGKTAFVKALKKLFLLHNNSRRNLQTRS 176
            E VKARRRMAE NLSETSGA+ TRRK  GKTAFVK LKKLFL+HNNSRRNLQTRS
Sbjct: 121 NETVKARRRMAEFNLSETSGAMATRRKTMGKTAFVKVLKKLFLMHNNSRRNLQTRS 175

[Close]

BLAST of Cp4.1LG06g09330.1 vs. NCBI nr
Match: gi|590603254|ref|XP_007019958.1| (Uncharacterized protein TCM_036336 [Theobroma cacao])

HSP 1 Score: 84.7 bits (208), Expect = 1.7e-13
Identity = 69/171 (40.35%), Postives = 96/171 (56.14%), Query Frame = 1


Query: 1   MAVEDDFSFPT--ALEPFNRCGIDSPPLWRLSPTASPISYRQKTASNRSFRDDQKSDRFA 60
           MA  ++FSFPT  AL P   CGIDSPPLWRLSP ASP  +  + A   S R+++  D F 
Sbjct: 1   MASTEEFSFPTTAALYP---CGIDSPPLWRLSPAASPDVFLDRKAKECSTREEE--DCFP 60

Query: 61  SVRFSASLQRRRRFS---SDAAMDGEEEEEEVAAEKMDVLWENFNEELSRSGRSRLMKTA 120
             R     Q R+ FS     + +  ++   E   EKMD+LWE+FNEEL  S  SR   + 
Sbjct: 61  D-RPEKKHQERKSFSYVEKGSKVSSKKVAAEDEEEKMDLLWEDFNEELPTSRSSR--SSG 120

Query: 121 EMEEIEIVKARRRMAELNLSETSGAVVTRRKATGKTAFVKALKKLFLLHNN 167
           +M E+   +A      L LS+ + A+   R+  G   F++ L+KLFL+HN+
Sbjct: 121 DMVELGCAQA------LKLSKNNAAMFPPRR-PGMLVFMRVLRKLFLVHNS 156

[Close]

BLAST of Cp4.1LG06g09330.1 vs. NCBI nr
Match: gi|255571786|ref|XP_002526836.1| (PREDICTED: uncharacterized protein LOC8262733 [Ricinus communis])

HSP 1 Score: 76.6 bits (187), Expect = 4.7e-11
Identity = 65/191 (34.03%), Postives = 100/191 (52.36%), Query Frame = 1


Query: 2   AVEDDFSFPT-ALEPFNRCGIDSPPLWRLSPTASP-----ISYRQKTASNRSFRDDQKSD 61
           A  DDF+FP  A +PF+  G+DSP LW LSP ASP         Q+    +   D  + +
Sbjct: 6   AAADDFTFPIFATDPFSS-GVDSPSLWHLSPAASPDHSCHAKPEQEQEREQGQEDSDQEE 65

Query: 62  RFASVRFSASLQRRRRFS--SDAAMDGEEEEEEVAAEKMDVLWENFNEELSRSGRSRLMK 121
            F          +R+ FS     +  GE ++ +   EKMD+LWE+FNEE++   RS+   
Sbjct: 66  DFQDCFPLYKPAQRKSFSWEEKGSKYGEVDDGDDKEEKMDMLWEDFNEEITSLKRSQSTS 125

Query: 122 --TAEMEEIEIVKARRRMAELNLSETSGAVVTRRK--ATGKTAFVKALKKLFLLHN---- 174
              ++ +    V    ++  + L++TS A+V+ +K    G   F+K LKKLFLLHN    
Sbjct: 126 RFDSDHDMANRVGCVHQLQSVKLNKTSTAMVSPKKPATAGFVVFIKVLKKLFLLHNSHHH 185

[Close]

BLAST of Cp4.1LG06g09330.1 vs. NCBI nr
Match: gi|595791037|ref|XP_007199267.1| (hypothetical protein PRUPE_ppa022692mg [Prunus persica])

HSP 1 Score: 75.1 bits (183), Expect = 1.4e-10
Identity = 64/174 (36.78%), Postives = 84/174 (48.28%), Query Frame = 1


Query: 6   DFSFPTALEPFNRCGIDSPPLWRLSPTASPISYRQKTASNRSFRDDQKSDRFASVRFSAS 65
           DFSFPT   P   C IDSPPLWRLSP AS     Q  +      DD+  +   ++     
Sbjct: 5   DFSFPTHKFP---CTIDSPPLWRLSPAASSKVDDQNHSEEEEEEDDE--EEIVNINVKYC 64

Query: 66  LQRRRRFS------SDAAMDGEEEEEEVAAEKMDVLWENFNEEL-SRSGRSRLMK---TA 125
            QRR+ FS           D E  + +   EKMD+LWE+FNEEL SRS  +       + 
Sbjct: 65  DQRRKSFSYIERGTKMVEKDQESRDHDHGEEKMDMLWEDFNEELKSRSNTTSDYSGGLSR 124

Query: 126 EMEEIEIVKARRRMAELNLSETSGAVVTRRKATGKTAFVKALKKLFLLHNNSRR 170
           EM  +  VKA        L+ET+G      +     A +K LK+LF LHN+  +
Sbjct: 125 EMLHLGCVKA------FKLTETNGDHALSTRKPSVVAVMKVLKRLFFLHNSHHK 167

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g09330.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG06g09330.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K672_CUCSA	2.8e-63	80.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G283910 PE=4 SV=1	[more]
A0A061FJY8_THECC	1.2e-13	40.35	Uncharacterized protein OS=Theobroma cacao GN=TCM_036336 PE=4 SV=1	[more]
B9SLG7_RICCO	3.3e-11	34.03	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0686540 PE=4 SV=1	[more]
M5VI77_PRUPE	9.5e-11	36.78	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022692mg PE=4 SV=1	[more]
U5FEQ9_POPTR	3.6e-10	34.07	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s11420g PE=4 SV=1	[more]

BLAST of Cp4.1LG06g09330.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG06g09330.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659123054\|ref\|XP_008461465.1\|	3.7e-64	79.78	PREDICTED: uncharacterized protein LOC103500054 isoform X1 [Cucumis melo]	[more]
gi\|778730295\|ref\|XP_011659753.1\|	4.1e-63	80.11	PREDICTED: uncharacterized protein LOC105436259 [Cucumis sativus]	[more]
gi\|590603254\|ref\|XP_007019958.1\|	1.7e-13	40.35	Uncharacterized protein TCM_036336 [Theobroma cacao]	[more]
gi\|255571786\|ref\|XP_002526836.1\|	4.7e-11	34.03	PREDICTED: uncharacterized protein LOC8262733 [Ricinus communis]	[more]
gi\|595791037\|ref\|XP_007199267.1\|	1.4e-10	36.78	hypothetical protein PRUPE_ppa022692mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG06g09330	Cp4.1LG06g09330	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG06g09330.1:cds:001	Cp4.1LG06g09330.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG06g09330.1	Cp4.1LG06g09330.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 115..135 scor
None	No IPR available	PANTHER	PTHR34666	FAMILY NOT NAMED	coord: 1..168 score: 1.2
None	No IPR available	PANTHER	PTHR34666:SF1	SUBFAMILY NOT NAMED	coord: 1..168 score: 1.2