Cp4.1LG06g04880.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG06g04880.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG06 : 2247849 .. 2248343 (+)
Sequence length495
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGGATCGAATGCTTTTTGCAGGTATCGACGGCGGCGGCGAGACTTTTATCGTCGGAATGGCCGATATCGAGCTGCTCTGCCGGAAAATATACCCTGTAACCAATTTCTGCCTCCGCCGTCCGCCAGAGCTCGTAAGATTCCATAACAAGACTGTGATAATAATCCTCCGGATAGGTGGCGCGTATGGTGCGAGATTCGCCATGAGAAGAGCCTCTGTGGTGAAGAAAATCGAACTGCTCCAGAATCAGAACTTTGTTCCCTGTTTTAGCGAGATGGTATGCCGTCGAACTGCCCATTACGCCGGCGCCGACGACGATTACATCATATTGAGTGCCGGAATCGGCCATTTCTCTTCTCCGATTTGTTTGGAACTTTTTTCTCTCTTCGGAGTCTCCGATGAGGGGAATGTGCGTGTAGAGTTATGGAAGAGAGTTATTGAAGTTGAATTGAAGTGTGCTACTGCAGCTTCGTGGAGAGCGCTCGTATTTTGA

mRNA sequence

ATGCGGGATCGAATGCTTTTTGCAGGTATCGACGGCGGCGGCGAGACTTTTATCGTCGGAATGGCCGATATCGAGCTGCTCTGCCGGAAAATATACCCTGTAACCAATTTCTGCCTCCGCCGTCCGCCAGAGCTCGTAAGATTCCATAACAAGACTGTGATAATAATCCTCCGGATAGGTGGCGCGTATGGTGCGAGATTCGCCATGAGAAGAGCCTCTGTGGTGAAGAAAATCGAACTGCTCCAGAATCAGAACTTTGTTCCCTGTTTTAGCGAGATGGTATGCCGTCGAACTGCCCATTACGCCGGCGCCGACGACGATTACATCATATTGAGTGCCGGAATCGGCCATTTCTCTTCTCCGATTTGTTTGGAACTTTTTTCTCTCTTCGGAGTCTCCGATGAGGGGAATGTGCGTGTAGAGTTATGGAAGAGAGTTATTGAAGTTGAATTGAAGTGTGCTACTGCAGCTTCGTGGAGAGCGCTCGTATTTTGA

Coding sequence (CDS)

ATGCGGGATCGAATGCTTTTTGCAGGTATCGACGGCGGCGGCGAGACTTTTATCGTCGGAATGGCCGATATCGAGCTGCTCTGCCGGAAAATATACCCTGTAACCAATTTCTGCCTCCGCCGTCCGCCAGAGCTCGTAAGATTCCATAACAAGACTGTGATAATAATCCTCCGGATAGGTGGCGCGTATGGTGCGAGATTCGCCATGAGAAGAGCCTCTGTGGTGAAGAAAATCGAACTGCTCCAGAATCAGAACTTTGTTCCCTGTTTTAGCGAGATGGTATGCCGTCGAACTGCCCATTACGCCGGCGCCGACGACGATTACATCATATTGAGTGCCGGAATCGGCCATTTCTCTTCTCCGATTTGTTTGGAACTTTTTTCTCTCTTCGGAGTCTCCGATGAGGGGAATGTGCGTGTAGAGTTATGGAAGAGAGTTATTGAAGTTGAATTGAAGTGTGCTACTGCAGCTTCGTGGAGAGCGCTCGTATTTTGA

Protein sequence

MRDRMLFAGIDGGGETFIVGMADIELLCRKIYPVTNFCLRRPPELVRFHNKTVIIILRIGGAYGARFAMRRASVVKKIELLQNQNFVPCFSEMVCRRTAHYAGADDDYIILSAGIGHFSSPICLELFSLFGVSDEGNVRVELWKRVIEVELKCATAASWRALVF
Homology
[Close]
BLAST of Cp4.1LG06g04880.1 vs. TrEMBL
Match: A0A0A0LHG3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G881895 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.6e-36
Identity = 76/109 (69.72%), Postives = 89/109 (81.65%), Query Frame = 1 

Query: 1   MRDRMLFAGIDGGGETFIVGMADIELLCRKIYPVTNFCLRRPPELVRFHNKTVIIILRIG 60
           MRDRML AGI+ GGETF+VG ADIEL  RK+  V NF LR PPELVRFHN+ ++IIL IG
Sbjct: 1   MRDRMLPAGINDGGETFVVGRADIELFRRKVDFVANFLLRHPPELVRFHNEAIVIILWIG 60

Query: 61  GAYGARFAMRRASVVKKIELLQNQNFVPCFSEMVCRRTAHYAGADDDYI 110
           G YG RF MRRASV+KKI+LL+N+N VPCFS+MV RRT+HY G D +YI
Sbjct: 61  GTYGTRFTMRRASVMKKIKLLENENSVPCFSKMVGRRTSHYPGTDHNYI 109

[Close]
BLAST of Cp4.1LG06g04880.1 vs. NCBI nr
Match: gi|700205044|gb|KGN60177.1| (hypothetical protein Csa_3G881895 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 5.1e-36
Identity = 76/109 (69.72%), Postives = 89/109 (81.65%), Query Frame = 1 

Query: 1   MRDRMLFAGIDGGGETFIVGMADIELLCRKIYPVTNFCLRRPPELVRFHNKTVIIILRIG 60
           MRDRML AGI+ GGETF+VG ADIEL  RK+  V NF LR PPELVRFHN+ ++IIL IG
Sbjct: 1   MRDRMLPAGINDGGETFVVGRADIELFRRKVDFVANFLLRHPPELVRFHNEAIVIILWIG 60

Query: 61  GAYGARFAMRRASVVKKIELLQNQNFVPCFSEMVCRRTAHYAGADDDYI 110
           G YG RF MRRASV+KKI+LL+N+N VPCFS+MV RRT+HY G D +YI
Sbjct: 61  GTYGTRFTMRRASVMKKIKLLENENSVPCFSKMVGRRTSHYPGTDHNYI 109

The following BLAST results are available for this feature:
BLAST of Cp4.1LG06g04880.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG06g04880.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LHG3_CUCSA3.6e-3669.72Uncharacterized protein OS=Cucumis sativus GN=Csa_3G881895 PE=4 SV=1[more]
BLAST of Cp4.1LG06g04880.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG06g04880.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205044|gb|KGN60177.1|5.1e-3669.72hypothetical protein Csa_3G881895 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG06g04880Cp4.1LG06g04880gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG06g04880.1:cds:001Cp4.1LG06g04880.1:cds:001CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG06g04880.1Cp4.1LG06g04880.1-proteinpolypeptide