Cp4.1LG06g04880 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG06g04880
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG06 : 2247849 .. 2248343 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGGATCGAATGCTTTTTGCAGGTATCGACGGCGGCGGCGAGACTTTTATCGTCGGAATGGCCGATATCGAGCTGCTCTGCCGGAAAATATACCCTGTAACCAATTTCTGCCTCCGCCGTCCGCCAGAGCTCGTAAGATTCCATAACAAGACTGTGATAATAATCCTCCGGATAGGTGGCGCGTATGGTGCGAGATTCGCCATGAGAAGAGCCTCTGTGGTGAAGAAAATCGAACTGCTCCAGAATCAGAACTTTGTTCCCTGTTTTAGCGAGATGGTATGCCGTCGAACTGCCCATTACGCCGGCGCCGACGACGATTACATCATATTGAGTGCCGGAATCGGCCATTTCTCTTCTCCGATTTGTTTGGAACTTTTTTCTCTCTTCGGAGTCTCCGATGAGGGGAATGTGCGTGTAGAGTTATGGAAGAGAGTTATTGAAGTTGAATTGAAGTGTGCTACTGCAGCTTCGTGGAGAGCGCTCGTATTTTGA

mRNA sequence

ATGCGGGATCGAATGCTTTTTGCAGGTATCGACGGCGGCGGCGAGACTTTTATCGTCGGAATGGCCGATATCGAGCTGCTCTGCCGGAAAATATACCCTGTAACCAATTTCTGCCTCCGCCGTCCGCCAGAGCTCGTAAGATTCCATAACAAGACTGTGATAATAATCCTCCGGATAGGTGGCGCGTATGGTGCGAGATTCGCCATGAGAAGAGCCTCTGTGGTGAAGAAAATCGAACTGCTCCAGAATCAGAACTTTGTTCCCTGTTTTAGCGAGATGGTATGCCGTCGAACTGCCCATTACGCCGGCGCCGACGACGATTACATCATATTGAGTGCCGGAATCGGCCATTTCTCTTCTCCGATTTGTTTGGAACTTTTTTCTCTCTTCGGAGTCTCCGATGAGGGGAATGTGCGTGTAGAGTTATGGAAGAGAGTTATTGAAGTTGAATTGAAGTGTGCTACTGCAGCTTCGTGGAGAGCGCTCGTATTTTGA

Coding sequence (CDS)

ATGCGGGATCGAATGCTTTTTGCAGGTATCGACGGCGGCGGCGAGACTTTTATCGTCGGAATGGCCGATATCGAGCTGCTCTGCCGGAAAATATACCCTGTAACCAATTTCTGCCTCCGCCGTCCGCCAGAGCTCGTAAGATTCCATAACAAGACTGTGATAATAATCCTCCGGATAGGTGGCGCGTATGGTGCGAGATTCGCCATGAGAAGAGCCTCTGTGGTGAAGAAAATCGAACTGCTCCAGAATCAGAACTTTGTTCCCTGTTTTAGCGAGATGGTATGCCGTCGAACTGCCCATTACGCCGGCGCCGACGACGATTACATCATATTGAGTGCCGGAATCGGCCATTTCTCTTCTCCGATTTGTTTGGAACTTTTTTCTCTCTTCGGAGTCTCCGATGAGGGGAATGTGCGTGTAGAGTTATGGAAGAGAGTTATTGAAGTTGAATTGAAGTGTGCTACTGCAGCTTCGTGGAGAGCGCTCGTATTTTGA

Protein sequence

MRDRMLFAGIDGGGETFIVGMADIELLCRKIYPVTNFCLRRPPELVRFHNKTVIIILRIGGAYGARFAMRRASVVKKIELLQNQNFVPCFSEMVCRRTAHYAGADDDYIILSAGIGHFSSPICLELFSLFGVSDEGNVRVELWKRVIEVELKCATAASWRALVF
Homology
[Close]
BLAST of Cp4.1LG06g04880 vs. TrEMBL
Match: A0A0A0LHG3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G881895 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.6e-36
Identity = 76/109 (69.72%), Postives = 89/109 (81.65%), Query Frame = 1 

Query: 1   MRDRMLFAGIDGGGETFIVGMADIELLCRKIYPVTNFCLRRPPELVRFHNKTVIIILRIG 60
           MRDRML AGI+ GGETF+VG ADIEL  RK+  V NF LR PPELVRFHN+ ++IIL IG
Sbjct: 1   MRDRMLPAGINDGGETFVVGRADIELFRRKVDFVANFLLRHPPELVRFHNEAIVIILWIG 60

Query: 61  GAYGARFAMRRASVVKKIELLQNQNFVPCFSEMVCRRTAHYAGADDDYI 110
           G YG RF MRRASV+KKI+LL+N+N VPCFS+MV RRT+HY G D +YI
Sbjct: 61  GTYGTRFTMRRASVMKKIKLLENENSVPCFSKMVGRRTSHYPGTDHNYI 109

[Close]
BLAST of Cp4.1LG06g04880 vs. NCBI nr
Match: gi|700205044|gb|KGN60177.1| (hypothetical protein Csa_3G881895 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 5.1e-36
Identity = 76/109 (69.72%), Postives = 89/109 (81.65%), Query Frame = 1 

Query: 1   MRDRMLFAGIDGGGETFIVGMADIELLCRKIYPVTNFCLRRPPELVRFHNKTVIIILRIG 60
           MRDRML AGI+ GGETF+VG ADIEL  RK+  V NF LR PPELVRFHN+ ++IIL IG
Sbjct: 1   MRDRMLPAGINDGGETFVVGRADIELFRRKVDFVANFLLRHPPELVRFHNEAIVIILWIG 60

Query: 61  GAYGARFAMRRASVVKKIELLQNQNFVPCFSEMVCRRTAHYAGADDDYI 110
           G YG RF MRRASV+KKI+LL+N+N VPCFS+MV RRT+HY G D +YI
Sbjct: 61  GTYGTRFTMRRASVMKKIKLLENENSVPCFSKMVGRRTSHYPGTDHNYI 109

The following BLAST results are available for this feature:
BLAST of Cp4.1LG06g04880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG06g04880 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LHG3_CUCSA3.6e-3669.72Uncharacterized protein OS=Cucumis sativus GN=Csa_3G881895 PE=4 SV=1[more]
BLAST of Cp4.1LG06g04880 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG06g04880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205044|gb|KGN60177.1|5.1e-3669.72hypothetical protein Csa_3G881895 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g04880.1Cp4.1LG06g04880.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG06g04880Cucumber (Chinese Long) v3cpecucB0959
Cp4.1LG06g04880Cucumber (Chinese Long) v3cpecucB0964
Cp4.1LG06g04880Wax gourdcpewgoB0977
Cp4.1LG06g04880Wax gourdcpewgoB0988
Cp4.1LG06g04880Cucurbita pepo (Zucchini)cpecpeB137
Cp4.1LG06g04880Cucurbita pepo (Zucchini)cpecpeB467
Cp4.1LG06g04880Cucurbita pepo (Zucchini)cpecpeB512
Cp4.1LG06g04880Cucumber (Gy14) v1cgycpeB0443
Cp4.1LG06g04880Cucumber (Gy14) v1cgycpeB0828
Cp4.1LG06g04880Cucurbita maxima (Rimu)cmacpeB060
Cp4.1LG06g04880Cucurbita maxima (Rimu)cmacpeB201
Cp4.1LG06g04880Cucurbita maxima (Rimu)cmacpeB502
Cp4.1LG06g04880Cucurbita maxima (Rimu)cmacpeB788
Cp4.1LG06g04880Cucurbita moschata (Rifu)cmocpeB034
Cp4.1LG06g04880Cucurbita moschata (Rifu)cmocpeB173
Cp4.1LG06g04880Cucurbita moschata (Rifu)cmocpeB460
Cp4.1LG06g04880Cucurbita moschata (Rifu)cmocpeB741
Cp4.1LG06g04880Wild cucumber (PI 183967)cpecpiB775
Cp4.1LG06g04880Wild cucumber (PI 183967)cpecpiB778
Cp4.1LG06g04880Cucumber (Chinese Long) v2cpecuB773
Cp4.1LG06g04880Cucumber (Chinese Long) v2cpecuB776
Cp4.1LG06g04880Bottle gourd (USVL1VR-Ls)cpelsiB652
Cp4.1LG06g04880Bottle gourd (USVL1VR-Ls)cpelsiB636
Cp4.1LG06g04880Watermelon (Charleston Gray)cpewcgB705
Cp4.1LG06g04880Watermelon (Charleston Gray)cpewcgB714
Cp4.1LG06g04880Watermelon (97103) v1cpewmB761
Cp4.1LG06g04880Watermelon (97103) v1cpewmB770
Cp4.1LG06g04880Melon (DHL92) v3.5.1cpemeB719
Cp4.1LG06g04880Melon (DHL92) v3.5.1cpemeB728
Cp4.1LG06g04880Cucumber (Gy14) v2cgybcpeB255
Cp4.1LG06g04880Cucumber (Gy14) v2cgybcpeB436
Cp4.1LG06g04880Melon (DHL92) v3.6.1cpemedB854
Cp4.1LG06g04880Melon (DHL92) v3.6.1cpemedB861
Cp4.1LG06g04880Silver-seed gourdcarcpeB0086
Cp4.1LG06g04880Silver-seed gourdcarcpeB0782
Cp4.1LG06g04880Silver-seed gourdcarcpeB0906
Cp4.1LG06g04880Silver-seed gourdcarcpeB1366