Cp4.1LG06g04600.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG06g04600.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	SWAP/surp RNA-binding domain-containing protein isoform 2
Location	Cp4.1LG06 : 2264288 .. 2268091 (-)
Sequence length	2823

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATGCATCAATTCCCTAGTTCGATTTCAGAGTCGGGACCGGGGCGGATGCGTTTATCGCAGGTTCGCTTGAAGCCCTAAGGATCCATTTCGAAGACCGGAAATTACAGCGGCGACCGGCGCCGAGCTCGTCGGAGTCGTCGTGGAATTGCAAGAACGAAGAGAGAGTGCGAAGCAGCTTGGAGGCTTGTGTGAAAGACGACGCTGGTTAGTGTAGATATGTTCTGGCACTAAGCAATTTTTCTTTTTTTCTTTTTCTGTTATGGACGAATTTCCGTTATGTAGCTGAGATTTTGATGAAAAAGATACAGAGAAATTATAGGATTTTTGTTCGCAATGTTCTGTAAATGATGTGCGAAAGTACTGCAAGCTAAGCGGTTTGTGTATGCTTGTTTTTTAGGATTTTACTTTTGAACTCTCAGGAGTAAGTCAAATGTAGTTTGTTAATACTTACTTTCAATTTGGAGTTGTTTGATGATAAGAAATGGGGATGGGAGGAAATTGTAGCTTTTGATTGTTTGGAGGATGATTAATGATCTGTTTCTTTGCGAAATTATAGCTTTTGATTGCTTGGAGGATGATTAAGGATTTGTTTCTTTGCGAAATTTGTGCCTGCAGAGTGAAGATTTTGTGGAGATTGTTATCCAGCTGATAACTGATATAGAATTATCGATAGCTAATGGATCGGCAGTCTCAAGATTATGCAGCTGCTTCTGCTATGGCTTATGCCCAACAGCAGAGACAGGCAACTAATCTGCAACAGCAGCAGCCATTTGGATTTCATGGCCAACATCAACAATTTCCTCCATCTGTTCCGGGTCCTCCTTTCCTACCGCCGCATCCTGCTATGCAACAGTTCCCTTATCACCACCCTATGCAGCAGCAGCAGCAGCCACAGCCCCACCCGCATCATCCACCCCACCCCCACCTTCTTCATCTTCAACAGCAGCAGCCACCACCAGCTTTTGCTCCGCATTTACCCCCTCCCATGGGTCATTCACCTTTCCATGGTCCCTATGATTCTGCTCCTCCACCAGTTCCACCTCCTTCAGACCCTGAGCTCCAAAAACGGATAGACAAACTTGTGGAGTATATCATAAAGAATGGCCCTGAATTTGAATCCATGATACGTGAAAAGCAACAGGACAACCCAGCATATGGCTTTCTCTTTGGTGGGGAGGGGCACGGTTACTACCGTTATAAGCTTTGGCTAATGACTCGCCCCCACCTTGGAGGACCCTTCAACCCTCCCTTTCCATCTTCATCCATGCCCATGTTGCACCCTCATCCAAATCCTATGACAAGTCCATCTCCCCTTAATGCTCCTCCATTGAATGCTTCTGCATCAATAATTGGGGGTCCTCAAATGCATCAAACTTCTTTTGCTTCTTTCTACGAGCAGCAGCAGCACCATCAACAGGCTTTTGGAGTTCCTGGTCGGTCGGATTACGATCAATCTTCAAAATCTTTTAAAGGGCTTTCTGGACCTCTTCCTTCTGATGTTGCTTTGGAGCTCAACAATGTGCTTAGTAATCTCACTGGTGCTAAAGAATCAATTAAAGGAGCTAAAACTTGGTTCATGCAGCGGTCTCCTTTTGCTCCAGCCANGAGGCGCCAAAAATGGGGTTTTTGGGATTAAGTCAAGCAGCCGCTCTCGCGCCACTCCATTAGGGTTTTAGGGCCATGTCATTTTATCTCTTTTTTTTTTTTTTTTTTTTTTTNGCCATGGCCGAGGCACTTAGAGACATGGTATTTAACATAGATGATTCTGAGAAGCAACTTCATATAATATACCTTGTCAATGACATTCTTTTTGAGAGGTACGCTACCATATGATTGCTTTCGTTATTGTTATTTCAAATTTACAATTTCTTGGGTTAGTGCATTTAGCATGCTGCAGTTCATGATTGTTGTTGAATACCATGTACATCTTTCTTTATTTTCTTAGAACTTTTGCAAAGTAACTGCTCCTTTAGTGAGGGATGTTCTCTCCTTTCTTGCTCCTTAAATAGAATCACATTGTTCTATGTTCTACTTTAATGGTTCTTGAATGAGTGCGTCAATATTAATGAAGTGCATTGATTGTATTCAAGTTAATTCCTTCGTTTCCTGATCACATTCAGTTGATGGTTTTTTTGTTCTGATAGAAGTTCTATTCAATAAATCATCATTCGTGTTGACAAACTAATCTGATAGCAGTACTACAACATAATTATTCGAAGGGTGAGTTTTTTCCCCATTAAATTTTCTTCCAAATTTTGCAGCATGATGCGAAGAATCAACGCAAAGGACCTTGATAATGAAGCTCTAGCATTCGAACCAGTTTTAGGTTCCATGCTTGCAAGAGTATATCACAACCCTCAAATGAAGGAGGAAAGCCAGTTGAAATTACAGAAGTTGGTACAGTTCTGGGCGTCCAAGGAGATTTATGATCAGAATACTATTAACACACTCGAGGGTGAAATGATTAATGGGATACCAACAAAAGCTTTGCCGGGGCATCCAAAAGAGACACCAGCTTCAGTAGATTCAGCTGCCGGTGGGCCTCTCTCGCATTTTTGTCTCTTATTTTCTCTGTGCATTTGCAGAGTACTATTGTAAGATAATGATGTTTTCAGGTAACATGGCTATAATCTTTGTTAAACTTCTTCTTGGTGCCACGCAGGATTGACGTCGCATACAAATAACCTTACCGTGCACCAGTGGCAATCTGACAGGCAAGGTGCCATTCCAAGTTTTCCCGATCAAGAGCACCCCGATAAGACTGTTCCCGCAGGCCAAACGCTGCCAAGATCCGTGACGCCACAGCAATTTCTACCAAGTGCAATACCCACTGCTGCTTTTGTAAGCTCCATTCCCTTGCCAACTTCTGTACAACCACCAATCCAACAGCCCAATGCCCAATTAATGCCACCACAGCCTGCTGCTGTGGGTGAAAAATTGCCACCATATCCTTTGTTCCCACCTGGTCTTATCCCTGGAATGGTGAGAAAAATGCAGATTGGAAGTGGAGTCCCATATTCTCCCATGAGCCCTTTGGATATCCCAACTATGATTCCTCCATCCAATATATCTCCCTCTGAAGTTCTTGAGAGAGTGTCTAAGTTCTTTAAAGAGATTGGTGAGGTTAATCCCTCAGAAGGACCCATGAGTTCTGATTCCAAAGATGACGATTATGAGTACGATAGAGAACCGCCCGTGCGTAAGGGTGGAGCTTGCATTCCTCCTCCTCCCAACCTTCAGGTTGACCCAGAGACGGGTGCTTATGCTGATGGAAGCGTAGATCGAAAAGGCTCAGGAAGGTTAGGACTCGGAGCATCGGCCAATCCAAACGAGGATAGTCAATATGATGATGTTTATACTTCTTACAGGAAGCAAAGAAGTACCAATTACCACACTTCTATGAGTGCAAGGGCCACAACAAAGTGAAAAGAAACGGATCAATTTATTACTAGGAGTGACCCCATAGTTTGAAACATGTAAGATACCAACTTTTTTCTGTTTACTTCTAAGTTTTGCTGAATTTATTCACCATGCTTAGGTCATTAGCCATCGGACTCGACCCGTTGAATTGTGTATTTAGTTTTGATCTTAAGAATCGTTTTCTAAGCGGATAAGACGACGATATGAAACTAGATTTGTTTCTTTAAGATTGATTCCTCTGGTAAATTGGATAGTGAATTTCGTCCTACAACAGTTGGCTCACTCCATTATTTGTGGAATTTCTCCTTAAATCTGTACTTGATAGAACTCAAAGGCATGTCTTGTTTGGCAAAAGCAGATTCAATGTGACATTTCCTTGTCT

mRNA sequence

TAATGCATCAATTCCCTAGTTCGATTTCAGAGTCGGGACCGGGGCGGATGCGTTTATCGCAGGTTCGCTTGAAGCCCTAAGGATCCATTTCGAAGACCGGAAATTACAGCGGCGACCGGCGCCGAGCTCGTCGGAGTCGTCGTGGAATTGCAAGAACGAAGAGAGAGTGCGAAGCAGCTTGGAGGCTTGTGTGAAAGACGACGCTGAGTGAAGATTTTGTGGAGATTGTTATCCAGCTGATAACTGATATAGAATTATCGATAGCTAATGGATCGGCAGTCTCAAGATTATGCAGCTGCTTCTGCTATGGCTTATGCCCAACAGCAGAGACAGGCAACTAATCTGCAACAGCAGCAGCCATTTGGATTTCATGGCCAACATCAACAATTTCCTCCATCTGTTCCGGGTCCTCCTTTCCTACCGCCGCATCCTGCTATGCAACAGTTCCCTTATCACCACCCTATGCAGCAGCAGCAGCAGCCACAGCCCCACCCGCATCATCCACCCCACCCCCACCTTCTTCATCTTCAACAGCAGCAGCCACCACCAGCTTTTGCTCCGCATTTACCCCCTCCCATGGGTCATTCACCTTTCCATGGTCCCTATGATTCTGCTCCTCCACCAGTTCCACCTCCTTCAGACCCTGAGCTCCAAAAACGGATAGACAAACTTGTGGAGTATATCATAAAGAATGGCCCTGAATTTGAATCCATGATACGTGAAAAGCAACAGGACAACCCAGCATATGGCTTTCTCTTTGGTGGGGAGGGGCACGGTTACTACCGTTATAAGCTTTGGCTAATGACTCGCCCCCACCTTGGAGGACCCTTCAACCCTCCCTTTCCATCTTCATCCATGCCCATGTTGCACCCTCATCCAAATCCTATGACAAGTCCATCTCCCCTTAATGCTCCTCCATTGAATGCTTCTGCATCAATAATTGGGGGTCCTCAAATGCATCAAACTTCTTTTGCTTCTTTCTACGAGCAGCAGCAGCACCATCAACAGGCTTTTGGAGTTCCTGGTCGGTCGGATTACGATCAATCTTCAAAATCTTTTAAAGGGCTTTCTGGACCTCTTCCTTCTGATGTTGCTTTGGAGCTCAACAATGTGCTTAGTAATCTCACTGGTGCTAAAGAATCAATTAAAGGAGCTAAAACTTGGTTCATGCAGCGGTCTCCTTTTGCTCCAGCCANGAGGCGCCAAAAATGGGGTTTTTGGGATTAAGTCAAGCAGCCGCTCTCGCGCCACTCCATTAGGGTTTTAGGGCCATGTCATTTTATCTCTTTTTTTTTTTTTTTTTTTTTTTNGCCATGGCCGAGGCACTTAGAGACATGGTATTTAACATAGATGATTCTGAGAAGCAACTTCATATAATATACCTTGTCAATGACATTCTTTTTGAGAGCATGATGCGAAGAATCAACGCAAAGGACCTTGATAATGAAGCTCTAGCATTCGAACCAGTTTTAGGTTCCATGCTTGCAAGAGTATATCACAACCCTCAAATGAAGGAGGAAAGCCAGTTGAAATTACAGAAGTTGGTACAGTTCTGGGCGTCCAAGGAGATTTATGATCAGAATACTATTAACACACTCGAGGGTGAAATGATTAATGGGATACCAACAAAAGCTTTGCCGGGGCATCCAAAAGAGACACCAGCTTCAGTAGATTCAGCTGCCGGATTGACGTCGCATACAAATAACCTTACCGTGCACCAGTGGCAATCTGACAGGCAAGGTGCCATTCCAAGTTTTCCCGATCAAGAGCACCCCGATAAGACTGTTCCCGCAGGCCAAACGCTGCCAAGATCCGTGACGCCACAGCAATTTCTACCAAGTGCAATACCCACTGCTGCTTTTGTAAGCTCCATTCCCTTGCCAACTTCTGTACAACCACCAATCCAACAGCCCAATGCCCAATTAATGCCACCACAGCCTGCTGCTGTGGGTGAAAAATTGCCACCATATCCTTTGTTCCCACCTGGTCTTATCCCTGGAATGGTGAGAAAAATGCAGATTGGAAGTGGAGTCCCATATTCTCCCATGAGCCCTTTGGATATCCCAACTATGATTCCTCCATCCAATATATCTCCCTCTGAAGTTCTTGAGAGAGTGTCTAAGTTCTTTAAAGAGATTGGTGAGGTTAATCCCTCAGAAGGACCCATGAGTTCTGATTCCAAAGATGACGATTATGAGTACGATAGAGAACCGCCCGTGCGTAAGGGTGGAGCTTGCATTCCTCCTCCTCCCAACCTTCAGGTTGACCCAGAGACGGGTGCTTATGCTGATGGAAGCGTAGATCGAAAAGGCTCAGGAAGGTTAGGACTCGGAGCATCGGCCAATCCAAACGAGGATAGTCAATATGATGATGTTTATACTTCTTACAGGAAGCAAAGAAGTACCAATTACCACACTTCTATGAGTGCAAGGGCCACAACAAAGTGAAAAGAAACGGATCAATTTATTACTAGGAGTGACCCCATAGTTTGAAACATGTAAGATACCAACTTTTTTCTGTTTACTTCTAAGTTTTGCTGAATTTATTCACCATGCTTAGGTCATTAGCCATCGGACTCGACCCGTTGAATTGTGTATTTAGTTTTGATCTTAAGAATCGTTTTCTAAGCGGATAAGACGACGATATGAAACTAGATTTGTTTCTTTAAGATTGATTCCTCTGGTAAATTGGATAGTGAATTTCGTCCTACAACAGTTGGCTCACTCCATTATTTGTGGAATTTCTCCTTAAATCTGTACTTGATAGAACTCAAAGGCATGTCTTGTTTGGCAAAAGCAGATTCAATGTGACATTTCCTTGTCT

Coding sequence (CDS)

ATGTCATTTTATCTCTTTTTTTTTTTTTTTTTTTTTTTNGCCATGGCCGAGGCACTTAGAGACATGGTATTTAACATAGATGATTCTGAGAAGCAACTTCATATAATATACCTTGTCAATGACATTCTTTTTGAGAGCATGATGCGAAGAATCAACGCAAAGGACCTTGATAATGAAGCTCTAGCATTCGAACCAGTTTTAGGTTCCATGCTTGCAAGAGTATATCACAACCCTCAAATGAAGGAGGAAAGCCAGTTGAAATTACAGAAGTTGGTACAGTTCTGGGCGTCCAAGGAGATTTATGATCAGAATACTATTAACACACTCGAGGGTGAAATGATTAATGGGATACCAACAAAAGCTTTGCCGGGGCATCCAAAAGAGACACCAGCTTCAGTAGATTCAGCTGCCGGATTGACGTCGCATACAAATAACCTTACCGTGCACCAGTGGCAATCTGACAGGCAAGGTGCCATTCCAAGTTTTCCCGATCAAGAGCACCCCGATAAGACTGTTCCCGCAGGCCAAACGCTGCCAAGATCCGTGACGCCACAGCAATTTCTACCAAGTGCAATACCCACTGCTGCTTTTGTAAGCTCCATTCCCTTGCCAACTTCTGTACAACCACCAATCCAACAGCCCAATGCCCAATTAATGCCACCACAGCCTGCTGCTGTGGGTGAAAAATTGCCACCATATCCTTTGTTCCCACCTGGTCTTATCCCTGGAATGGTGAGAAAAATGCAGATTGGAAGTGGAGTCCCATATTCTCCCATGAGCCCTTTGGATATCCCAACTATGATTCCTCCATCCAATATATCTCCCTCTGAAGTTCTTGAGAGAGTGTCTAAGTTCTTTAAAGAGATTGGTGAGGTTAATCCCTCAGAAGGACCCATGAGTTCTGATTCCAAAGATGACGATTATGAGTACGATAGAGAACCGCCCGTGCGTAAGGGTGGAGCTTGCATTCCTCCTCCTCCCAACCTTCAGGTTGACCCAGAGACGGGTGCTTATGCTGATGGAAGCGTAGATCGAAAAGGCTCAGGAAGGTTAGGACTCGGAGCATCGGCCAATCCAAACGAGGATAGTCAATATGATGATGTTTATACTTCTTACAGGAAGCAAAGAAGTACCAATTACCACACTTCTATGAGTGCAAGGGCCACAACAAAGTGA

Protein sequence

MSFYLFFFFFFFXAMAEALRDMVFNIDDSEKQLHIIYLVNDILFESMMRRINAKDLDNEALAFEPVLGSMLARVYHNPQMKEESQLKLQKLVQFWASKEIYDQNTINTLEGEMINGIPTKALPGHPKETPASVDSAAGLTSHTNNLTVHQWQSDRQGAIPSFPDQEHPDKTVPAGQTLPRSVTPQQFLPSAIPTAAFVSSIPLPTSVQPPIQQPNAQLMPPQPAAVGEKLPPYPLFPPGLIPGMVRKMQIGSGVPYSPMSPLDIPTMIPPSNISPSEVLERVSKFFKEIGEVNPSEGPMSSDSKDDDYEYDREPPVRKGGACIPPPPNLQVDPETGAYADGSVDRKGSGRLGLGASANPNEDSQYDDVYTSYRKQRSTNYHTSMSARATTK

Homology

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BLAST of Cp4.1LG06g04600.1 vs. TrEMBL
Match: A0A0A0KSG0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G215110 PE=4 SV=1)

HSP 1 Score: 697.2 bits (1798), Expect = 1.1e-197
Identity = 351/381 (92.13%), Postives = 363/381 (95.28%), Query Frame = 1


Query: 11  FFXAMAEALRDMVFNIDDSEKQLHIIYLVNDILFESMMRRINAKDLDNEALAFEPVLGSM 70
           F  AMAEALRDM+FNID+SEKQLHIIYLVNDILFESMMRRIN+KDLDNEALAFEPVLGSM
Sbjct: 307 FAPAMAEALRDMIFNIDESEKQLHIIYLVNDILFESMMRRINSKDLDNEALAFEPVLGSM 366

Query: 71  LARVYHNPQMKEESQLKLQKLVQFWASKEIYDQNTINTLEGEMINGIPTKALPGHPKETP 130
           LARVYHNPQMKEESQLKLQKLVQFWASKEIYDQ+TIN LEGEMINGIPTKALPGHPKE  
Sbjct: 367 LARVYHNPQMKEESQLKLQKLVQFWASKEIYDQDTINALEGEMINGIPTKALPGHPKELS 426

Query: 131 ASVDSAAGLTSHTNNLTVHQWQSDRQGAIPSFPDQEHPDKTVPAGQTLPRSVTPQQFLPS 190
           A+VDSAAGLT HTNN  +HQWQ DRQGAIPSFPDQEHPDK V +GQ LPRSVTPQQFLPS
Sbjct: 427 ATVDSAAGLTQHTNNHAMHQWQPDRQGAIPSFPDQEHPDKAVSSGQALPRSVTPQQFLPS 486

Query: 191 AIPTAAFVSSIPLPTSVQPPIQQPNAQLMPPQPAAVGEKLPPYPLFPPGLIPGMVRKMQI 250
            IPTAAFVSSIPLPTSVQPP QQPNAQLMPPQPAAVGEKLPPYPLFPPGLIPGMVRKMQI
Sbjct: 487 TIPTAAFVSSIPLPTSVQPPNQQPNAQLMPPQPAAVGEKLPPYPLFPPGLIPGMVRKMQI 546

Query: 251 GSGVPYSPMSPLDIPTMIPPSNISPSEVLERVSKFFKEIGEVNPSEGPMSSDSKDDDYEY 310
           GSGVPYSPMSPLDIPT+IPPS ISPSEVLERVSKFFKEIGEVNPSEGPM SD KDDD+EY
Sbjct: 547 GSGVPYSPMSPLDIPTVIPPSTISPSEVLERVSKFFKEIGEVNPSEGPMGSDGKDDDFEY 606

Query: 311 DREPPVRKGGACIPPPPNLQVDPETGAYADGSVDRKGSGRLGLGASANPNEDSQYDDVYT 370
           +REPPVRKGGACIPPPPNLQVDPETGAYADGSVDRKGSGRLGLGA+ NPNEDSQYDDVYT
Sbjct: 607 EREPPVRKGGACIPPPPNLQVDPETGAYADGSVDRKGSGRLGLGATTNPNEDSQYDDVYT 666

Query: 371 SYRKQRSTNYHTSMSARATTK 392
           SYRKQRSTNYH+SMSARATTK
Sbjct: 667 SYRKQRSTNYHSSMSARATTK 687

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BLAST of Cp4.1LG06g04600.1 vs. TrEMBL
Match: F6H1T4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0055g00770 PE=4 SV=1)

HSP 1 Score: 508.8 bits (1309), Expect = 5.7e-141
Identity = 267/389 (68.64%), Postives = 313/389 (80.46%), Query Frame = 1


Query: 11  FFXAMAEALRDMVFNIDDSEKQLHIIYLVNDILFESMMRRINAKDLDNEALAFEPVLGSM 70
           F  A+AEALRD VF +DDSE+QLHIIYL NDILF+S+ RRIN  +LDNEALAF+PVLGSM
Sbjct: 307 FAPALAEALRDRVFAVDDSERQLHIIYLANDILFDSLQRRINPHELDNEALAFKPVLGSM 366

Query: 71  LARVYHNPQMKEESQLKLQKLVQFWASKEIYDQNTINTLEGEMINGIPTKALPGHPKE-- 130
           LAR+YHNPQ KEE+Q +LQK++QFWASKE+YD +TI  LEGEMI G P+ +  G  KE  
Sbjct: 367 LARIYHNPQNKEENQSRLQKILQFWASKEVYDHDTIYGLEGEMIGGPPSNSFSGPHKELS 426

Query: 131 -TPASVDSAAGLTSHTNNLTVHQWQSDRQGAIPSFPDQEHPDKTVPAGQTLPRSVTPQQF 190
             P    + +GL    ++   H WQ ++  ++PS  +QE PDK +P+   +P S+  QQF
Sbjct: 427 AVPVDPSAVSGLPQSAHHNIPH-WQPEKPCSMPSLLEQEQPDKQMPSLAAMPPSLATQQF 486

Query: 191 LPSAIPTAAFVSSIPLPTSVQPPIQQPNAQLMPPQPAAVGEKLPPYPLFPPGLIPGMVRK 250
           LP+A+P   F+ S+P+P+SVQP  QQP   L  P  A +GEKLPPYPLFPPGLIPGMVRK
Sbjct: 487 LPNAVPAGPFLGSMPIPSSVQPANQQPALHL--PTAAGLGEKLPPYPLFPPGLIPGMVRK 546

Query: 251 MQIGSGVPYSPMSPLDIPTMIPPSNISPSEVLERVSKFFKEIGEVNPSEGPMS-SDSKDD 310
           MQIGSGVPYSPMSPLDIPT+IPPSN+SPSE+LERVSKFFKEIGEVNPSEGPM  SDSKD+
Sbjct: 547 MQIGSGVPYSPMSPLDIPTVIPPSNVSPSEILERVSKFFKEIGEVNPSEGPMEPSDSKDE 606

Query: 311 DYEYDREPPVRKGGACIPPPPNLQVDPETGAYADGSVDRK----GSGRLGLGASANPNED 370
           D EY+R+ PVRKGGACIPPPPNLQVDPETG YADGSV+RK    GS RLGLGA+ANPNE 
Sbjct: 607 DDEYERDSPVRKGGACIPPPPNLQVDPETGTYADGSVERKPGSSGSARLGLGATANPNEV 666

Query: 371 SQYDDVYTSYRKQRSTNYHTSMSARATTK 392
           SQYDDVYTSYRKQRSTNYH+SMSARA T+
Sbjct: 667 SQYDDVYTSYRKQRSTNYHSSMSARAGTR 692

[Close]

BLAST of Cp4.1LG06g04600.1 vs. TrEMBL
Match: F6H2C9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g05300 PE=4 SV=1)

HSP 1 Score: 503.4 bits (1295), Expect = 2.4e-139
Identity = 267/391 (68.29%), Postives = 313/391 (80.05%), Query Frame = 1


Query: 11  FFXAMAEALRDMVFNIDDSEKQLHIIYLVNDILFESMMRRINAKDLDNEALAFEPVLGSM 70
           F  A+AEALRD VF +DDSE+QLHIIYL NDILF+S+ RRIN  +LDNEALAF+PVLGSM
Sbjct: 306 FAPALAEALRDRVFALDDSERQLHIIYLANDILFDSLQRRINPHELDNEALAFKPVLGSM 365

Query: 71  LARVYHNPQMKEESQLKLQKLVQFWASKEIYDQNTINTLEGEMINGIPTKALPGHPKE-- 130
           LAR+YHNPQ KEE+Q +LQK++QFWASKE+YD +TI  LEG+MI G P  +  G  KE  
Sbjct: 366 LARIYHNPQNKEENQSRLQKILQFWASKEVYDHDTIYGLEGDMIGGPPGNSFSGLLKELS 425

Query: 131 -TPASVDSAAGL--TSHTNNLTVHQWQSDRQGAIPSFPDQEHPDKTVPAGQTLPRSVTPQ 190
             PA   + +GL  T+H N   V QWQ D+  ++PS  +QE PDK +P+   +P S+  Q
Sbjct: 426 AVPADPSAVSGLPQTAHHN---VPQWQPDKPSSMPSLLEQEQPDKQMPSLAAMPPSLATQ 485

Query: 191 QFLPSAIPTAAFVSSIPLPTSVQPPIQQPNAQLMPPQPAAVGEKLPPYPLFPPGLIPGMV 250
           QFLP+A+P   F+ S+P+P+SVQP  QQP   L  P    +GEKLPPYPLFPPGLIPGMV
Sbjct: 486 QFLPNAVPAGPFLGSMPIPSSVQPANQQPALHL--PTATGLGEKLPPYPLFPPGLIPGMV 545

Query: 251 RKMQIGSGVPYSPMSPLDIPTMIPPSNISPSEVLERVSKFFKEIGEVNPSEGPMS-SDSK 310
           RKMQIGSGVPYSPMSPLDIPT+IP SN+SPSE+LERVSKFFKEIGEVNPSEGPM  SDSK
Sbjct: 546 RKMQIGSGVPYSPMSPLDIPTVIPLSNVSPSEILERVSKFFKEIGEVNPSEGPMEPSDSK 605

Query: 311 DDDYEYDREPPVRKGGACIPPPPNLQVDPETGAYADGSVDRK----GSGRLGLGASANPN 370
           D+D EY+R+PPVRKGGACIPPPPNLQVDPETG Y+DGSV+RK    GS RLGLGA+ANPN
Sbjct: 606 DEDDEYERDPPVRKGGACIPPPPNLQVDPETGTYSDGSVERKPGSSGSARLGLGATANPN 665

Query: 371 EDSQYDDVYTSYRKQRSTNYHTSMSARATTK 392
           E SQYDDVY+SYRKQRST YH+SMSAR  T+
Sbjct: 666 EVSQYDDVYSSYRKQRSTTYHSSMSARVGTR 691

[Close]

BLAST of Cp4.1LG06g04600.1 vs. TrEMBL
Match: A0A059B6H7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H04509 PE=4 SV=1)

HSP 1 Score: 501.1 bits (1289), Expect = 1.2e-138
Identity = 263/383 (68.67%), Postives = 312/383 (81.46%), Query Frame = 1


Query: 11  FFXAMAEALRDMVFNIDDSEKQLHIIYLVNDILFESMMRRINAKDLDNEALAFEPVLGSM 70
           F  A+AEALRD V+ +DDSE+QLHIIYL NDILF+S+ RR+N  +LDNEA+AF+PVLGSM
Sbjct: 301 FAPALAEALRDRVYAMDDSERQLHIIYLANDILFDSLQRRVNPHELDNEAVAFKPVLGSM 360

Query: 71  LARVYHNPQMKEESQLKLQKLVQFWASKEIYDQNTINTLEGEMINGIPTKALPGHPKE-T 130
           LAR+YHNPQ KEE+Q +LQK++QFWASKE++DQ+T+  LEG+MI G+P+ + PG  KE +
Sbjct: 361 LARIYHNPQNKEENQSRLQKILQFWASKEVFDQDTVYGLEGDMIGGVPSGSFPGPSKELS 420

Query: 131 PASVDSAAGLTSHTNNLTVHQWQSDRQGAIPSFPDQEHPDKTVPAGQTLPRSVTPQQFLP 190
            +S DSA+GL   T NL   +WQ +RQ ++   PD++      PA Q+   S+ PQQFLP
Sbjct: 421 MSSKDSASGLPQQTPNLP--RWQQERQSSVSGLPDKD------PALQS---SLAPQQFLP 480

Query: 191 SAIPTAAFVSSIPLPTSVQPPIQQPNAQLMPPQPAAVGEKLPPYPLFPPGLIPGMVRKMQ 250
           +A+P  AF  SIP+P++VQP         +P   A VGEK+PPYPLFPPGLIPGMVRKMQ
Sbjct: 481 NAVPGGAFPGSIPMPSAVQP---------LPASNAHVGEKMPPYPLFPPGLIPGMVRKMQ 540

Query: 251 IGSGVPYSPMSPLDIPTMIPPSNISPSEVLERVSKFFKEIGEVNPSEGPMSSDSKDDDYE 310
           IGSGVPYSPMSPLDIP +IPPS + PSE+LERVSKFFKEIGEVNPSEGPM SDS++DD +
Sbjct: 541 IGSGVPYSPMSPLDIPNVIPPSTVPPSEILERVSKFFKEIGEVNPSEGPMESDSREDDED 600

Query: 311 YDREPPVRKGGACIPPPPNLQVDPETGAYADGSVDRK-GSGRLGLGASANPNEDSQYDDV 370
           Y RE PVRKGGACIPPPPNLQVDPETGAYADGSVDRK GSGRLGLGA+ANPNE SQYDDV
Sbjct: 601 YARELPVRKGGACIPPPPNLQVDPETGAYADGSVDRKSGSGRLGLGATANPNEVSQYDDV 660

Query: 371 YTSYRKQRSTNYHTSMSARATTK 392
           YTSYRKQRSTNYHTSMSARA  +
Sbjct: 661 YTSYRKQRSTNYHTSMSARAAAR 663

[Close]

BLAST of Cp4.1LG06g04600.1 vs. TrEMBL
Match: U5FJU4_POPTR (SWAP/surp domain-containing family protein OS=Populus trichocarpa GN=POPTR_0018s04080g PE=4 SV=1)

HSP 1 Score: 497.3 bits (1279), Expect = 1.7e-137
Identity = 263/390 (67.44%), Postives = 308/390 (78.97%), Query Frame = 1


Query: 11  FFXAMAEALRDMVFNIDDSEKQLHIIYLVNDILFESMMRRINAKDLDNEALAFEPVLGSM 70
           F  A+AEALRD +F++DDSE+QLHIIYL NDILF+S+ RRIN  DLDNEALAF+PVLGSM
Sbjct: 277 FAPALAEALRDRIFSLDDSERQLHIIYLANDILFDSLQRRINPHDLDNEALAFKPVLGSM 336

Query: 71  LARVYHNPQMKEESQLKLQKLVQFWASKEIYDQNTINTLEGEMINGIPTKALPGHPKE-T 130
           LAR+YH PQ K+E+Q +LQK++QFWASKE+YDQ+TI  LEGEM++G P  + PG PKE +
Sbjct: 337 LARIYHYPQNKDENQSRLQKILQFWASKEVYDQDTIYKLEGEMVSGPPVNSFPGPPKELS 396

Query: 131 PASVDS--AAGLTSHTNNLTVHQWQSDRQGAIPSFPDQEHPDKTVPAGQTLP---RSVTP 190
             S DS  AAG T H  +    QW  DRQ    S PDQEH DK     Q LP    ++  
Sbjct: 397 TGSTDSVPAAGFTQHATSHNAPQWPPDRQ----SVPDQEHLDK-----QMLPVMLPTLGN 456

Query: 191 QQFLPSAIPTAAFVSSIPLPTSVQPPIQQPNAQLMPPQPAAVGEKLPPYPLFPPGLIPGM 250
           QQF+P+ +P A F  S+P+ +SV P  QQP   L+   PA + E L PYPLFPPGLIPGM
Sbjct: 457 QQFIPNPVPAATFPGSLPINSSVLPAGQQPAPHLLQAPPANIAENLSPYPLFPPGLIPGM 516

Query: 251 VRKMQIGSGVPYSPMSPLDIPTMIPPSNISPSEVLERVSKFFKEIGEVNPSEGPMSSDSK 310
           VRKMQIGSGVPYSP+SPLDIPT IPPSN+ PSE+L+RVSKFFKEIGEVNPSEGPM +D K
Sbjct: 517 VRKMQIGSGVPYSPLSPLDIPTTIPPSNVPPSEILDRVSKFFKEIGEVNPSEGPMRADPK 576

Query: 311 DDDYEYDREPPVRKGGACIPPPPNLQVDPETGAYADGSVDRK---GSGRLGLGASANPNE 370
           D+D EY+RE P+RKGGACIPPPPNLQV+PETGAYADGSV+RK   GSGRLGLGA+A+PNE
Sbjct: 577 DEDDEYERESPIRKGGACIPPPPNLQVEPETGAYADGSVERKHGTGSGRLGLGATADPNE 636

Query: 371 DSQYDDVYTSYRKQRSTNYHTSMSARATTK 392
            SQYDDVYTSYRKQRSTNYH+SMS RA T+
Sbjct: 637 PSQYDDVYTSYRKQRSTNYHSSMSVRAATR 657

[Close]

BLAST of Cp4.1LG06g04600.1 vs. TAIR10
Match: AT4G31200.2 (AT4G31200.2 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein)

HSP 1 Score: 431.8 bits (1109), Expect = 4.5e-121
Identity = 236/385 (61.30%), Postives = 279/385 (72.47%), Query Frame = 1


Query: 11  FFXAMAEALRDMVFNIDDSEKQLHIIYLVNDILFESMMRRINAKDLDNEALAFEPVLGSM 70
           F  A+AEALRD VF +DDS++Q+HI+YL NDILF+S+ RR N  + DNEALAF P+LGSM
Sbjct: 302 FAPALAEALRDRVFAMDDSDRQMHIVYLANDILFDSLQRRTNLHEFDNEALAFRPILGSM 361

Query: 71  LARVYHNPQMKEESQLKLQKLVQFWASKEIYDQNTINTLEGEMINGIPTKALPGHPKETP 130
           L R+YH PQ KEE+Q +L+K++QFWASKE++DQ+TI++LE EM +G P            
Sbjct: 362 LGRIYHFPQNKEENQSRLEKILQFWASKEVFDQDTISSLEKEMKSGPP------------ 421

Query: 131 ASVDSAAGLTSHTNNLTVHQWQSDRQGAIPSFPDQEHPDKTVPAGQTLPRSVTP---QQF 190
                 A   SH+  +  H  Q  R G +     Q+ P+  V +   L     P   QQF
Sbjct: 422 ------ANTFSHSPIIAAHALQ--RPGML-----QQPPNSNVSSTMNLEHLTNPVATQQF 481

Query: 191 LPSAIPTAAFVSSIPLPTSVQPPIQQPNAQLMPPQPAAVGEKLPPYPLFPPGLIPGMVRK 250
           +P+ +P  AF  SIPL  SV PP Q P            GEK PPYPLFPPGLIPGMVRK
Sbjct: 482 IPNVMPPGAFPGSIPLNASVPPPTQPP-----------AGEKPPPYPLFPPGLIPGMVRK 541

Query: 251 MQIGSGVPYSPMSPLDIPTMIPPSNISPSEVLERVSKFFKEIGEVNPSEGPMSSDSKDDD 310
           MQIGSGVPYSP+SPLDIPT+IPPS+   SEVLERVSKFFKEIGEVNPSEGPM S+S+DD 
Sbjct: 542 MQIGSGVPYSPLSPLDIPTVIPPSDTPQSEVLERVSKFFKEIGEVNPSEGPMGSESQDDY 601

Query: 311 YEYDREPPVRKGGACIPPPPNLQVDPETGAYADGSVDRK-GSGRLGLGASANPNEDSQYD 370
             Y+R+ P RKGGACIPPPPNLQVDPETG YADGS D+K GSGRLGLGA+A+PNE +QYD
Sbjct: 602 DNYERDSPQRKGGACIPPPPNLQVDPETGTYADGSTDKKSGSGRLGLGATADPNEPTQYD 650

Query: 371 DVYTSYRKQRSTNYHTSMSARATTK 392
           DVYTSYRK RSTNYHTSMSARATT+
Sbjct: 662 DVYTSYRKHRSTNYHTSMSARATTR 650

[Close]

BLAST of Cp4.1LG06g04600.1 vs. NCBI nr
Match: gi|449460882|ref|XP_004148173.1| (PREDICTED: calcium homeostasis endoplasmic reticulum protein [Cucumis sativus])

HSP 1 Score: 697.2 bits (1798), Expect = 1.6e-197
Identity = 351/381 (92.13%), Postives = 363/381 (95.28%), Query Frame = 1


Query: 11  FFXAMAEALRDMVFNIDDSEKQLHIIYLVNDILFESMMRRINAKDLDNEALAFEPVLGSM 70
           F  AMAEALRDM+FNID+SEKQLHIIYLVNDILFESMMRRIN+KDLDNEALAFEPVLGSM
Sbjct: 307 FAPAMAEALRDMIFNIDESEKQLHIIYLVNDILFESMMRRINSKDLDNEALAFEPVLGSM 366

Query: 71  LARVYHNPQMKEESQLKLQKLVQFWASKEIYDQNTINTLEGEMINGIPTKALPGHPKETP 130
           LARVYHNPQMKEESQLKLQKLVQFWASKEIYDQ+TIN LEGEMINGIPTKALPGHPKE  
Sbjct: 367 LARVYHNPQMKEESQLKLQKLVQFWASKEIYDQDTINALEGEMINGIPTKALPGHPKELS 426

Query: 131 ASVDSAAGLTSHTNNLTVHQWQSDRQGAIPSFPDQEHPDKTVPAGQTLPRSVTPQQFLPS 190
           A+VDSAAGLT HTNN  +HQWQ DRQGAIPSFPDQEHPDK V +GQ LPRSVTPQQFLPS
Sbjct: 427 ATVDSAAGLTQHTNNHAMHQWQPDRQGAIPSFPDQEHPDKAVSSGQALPRSVTPQQFLPS 486

Query: 191 AIPTAAFVSSIPLPTSVQPPIQQPNAQLMPPQPAAVGEKLPPYPLFPPGLIPGMVRKMQI 250
            IPTAAFVSSIPLPTSVQPP QQPNAQLMPPQPAAVGEKLPPYPLFPPGLIPGMVRKMQI
Sbjct: 487 TIPTAAFVSSIPLPTSVQPPNQQPNAQLMPPQPAAVGEKLPPYPLFPPGLIPGMVRKMQI 546

Query: 251 GSGVPYSPMSPLDIPTMIPPSNISPSEVLERVSKFFKEIGEVNPSEGPMSSDSKDDDYEY 310
           GSGVPYSPMSPLDIPT+IPPS ISPSEVLERVSKFFKEIGEVNPSEGPM SD KDDD+EY
Sbjct: 547 GSGVPYSPMSPLDIPTVIPPSTISPSEVLERVSKFFKEIGEVNPSEGPMGSDGKDDDFEY 606

Query: 311 DREPPVRKGGACIPPPPNLQVDPETGAYADGSVDRKGSGRLGLGASANPNEDSQYDDVYT 370
           +REPPVRKGGACIPPPPNLQVDPETGAYADGSVDRKGSGRLGLGA+ NPNEDSQYDDVYT
Sbjct: 607 EREPPVRKGGACIPPPPNLQVDPETGAYADGSVDRKGSGRLGLGATTNPNEDSQYDDVYT 666

Query: 371 SYRKQRSTNYHTSMSARATTK 392
           SYRKQRSTNYH+SMSARATTK
Sbjct: 667 SYRKQRSTNYHSSMSARATTK 687

[Close]

BLAST of Cp4.1LG06g04600.1 vs. NCBI nr
Match: gi|659109679|ref|XP_008454822.1| (PREDICTED: calcium homeostasis endoplasmic reticulum protein-like [Cucumis melo])

HSP 1 Score: 686.4 bits (1770), Expect = 2.9e-194
Identity = 349/386 (90.41%), Postives = 362/386 (93.78%), Query Frame = 1


Query: 11  FFXAMAEALRDMVFNIDDSEKQLHIIYLVNDILFESMMRRINAKDLDNEALAFEPVLGSM 70
           F  AMAEALRDM+FNIDDSEKQLHIIYLVNDILFESMMRRIN+KDLDNEALAFEPVLGSM
Sbjct: 307 FAPAMAEALRDMIFNIDDSEKQLHIIYLVNDILFESMMRRINSKDLDNEALAFEPVLGSM 366

Query: 71  LARVYHNPQMKEESQLKLQKLVQFWASKEIYDQNTINTLEGEMINGIPTKALPGHPKETP 130
           LARVYHNPQMKEESQLKLQKLVQFWASKEIYDQ+TIN LEGEMINGIPTKALPGHPKE  
Sbjct: 367 LARVYHNPQMKEESQLKLQKLVQFWASKEIYDQDTINALEGEMINGIPTKALPGHPKELS 426

Query: 131 ASVDSAAGLTSHTNNLTVHQWQSDRQGAIPSFPDQEHPDKTVPAGQTLPRSVTPQQFLPS 190
           A+VDSAAGLT HTNN  +HQWQ DRQGAIPSFPDQEHPDK V +GQ LPRSVTPQQFLPS
Sbjct: 427 ATVDSAAGLTQHTNNHAMHQWQPDRQGAIPSFPDQEHPDKAVSSGQALPRSVTPQQFLPS 486

Query: 191 AIPTAAFVSSIPLPTSVQPPIQQPNAQLMPPQPAAVGEKLPPYPLFPPGLIPGMVRKMQI 250
            IPTAAFVSSIPLPTSVQPP QQPNAQLMPPQPAAVGEKLPPYPLFPPGLIPGMVRKMQI
Sbjct: 487 TIPTAAFVSSIPLPTSVQPPNQQPNAQLMPPQPAAVGEKLPPYPLFPPGLIPGMVRKMQI 546

Query: 251 GSGVPYSPMSPLDIPTMIPPSNISPSEVLERVSKFFKEIGEVNPSEGPMSSDSKDDDYEY 310
           GSGVPYSPMSPLDIPT+IPPS ISPSEVLERVSKFFKEIGEVNPSEGPMSSD KD+D+EY
Sbjct: 547 GSGVPYSPMSPLDIPTVIPPSTISPSEVLERVSKFFKEIGEVNPSEGPMSSDGKDEDFEY 606

Query: 311 DREPPVRKGGACIPPPPNLQVDPETGAYADGSVDRKGS-----GRLGLGASANPNEDSQY 370
           +REPPVRKGGACIPPPPNLQVDP+TGAYADGSVDRKGS       LGLGA+ NPNEDSQY
Sbjct: 607 EREPPVRKGGACIPPPPNLQVDPDTGAYADGSVDRKGSXXXXXXXLGLGATTNPNEDSQY 666

Query: 371 DDVYTSYRKQRSTNYHTSMSARATTK 392
           DDVYTSYRKQRSTNYH+SMSARATTK
Sbjct: 667 DDVYTSYRKQRSTNYHSSMSARATTK 692

[Close]

BLAST of Cp4.1LG06g04600.1 vs. NCBI nr
Match: gi|731410481|ref|XP_010657576.1| (PREDICTED: calcium homeostasis endoplasmic reticulum protein-like isoform X2 [Vitis vinifera])

HSP 1 Score: 508.8 bits (1309), Expect = 8.2e-141
Identity = 267/389 (68.64%), Postives = 313/389 (80.46%), Query Frame = 1


Query: 11  FFXAMAEALRDMVFNIDDSEKQLHIIYLVNDILFESMMRRINAKDLDNEALAFEPVLGSM 70
           F  A+AEALRD VF +DDSE+QLHIIYL NDILF+S+ RRIN  +LDNEALAF+PVLGSM
Sbjct: 275 FAPALAEALRDRVFAVDDSERQLHIIYLANDILFDSLQRRINPHELDNEALAFKPVLGSM 334

Query: 71  LARVYHNPQMKEESQLKLQKLVQFWASKEIYDQNTINTLEGEMINGIPTKALPGHPKE-- 130
           LAR+YHNPQ KEE+Q +LQK++QFWASKE+YD +TI  LEGEMI G P+ +  G  KE  
Sbjct: 335 LARIYHNPQNKEENQSRLQKILQFWASKEVYDHDTIYGLEGEMIGGPPSNSFSGPHKELS 394

Query: 131 -TPASVDSAAGLTSHTNNLTVHQWQSDRQGAIPSFPDQEHPDKTVPAGQTLPRSVTPQQF 190
             P    + +GL    ++   H WQ ++  ++PS  +QE PDK +P+   +P S+  QQF
Sbjct: 395 AVPVDPSAVSGLPQSAHHNIPH-WQPEKPCSMPSLLEQEQPDKQMPSLAAMPPSLATQQF 454

Query: 191 LPSAIPTAAFVSSIPLPTSVQPPIQQPNAQLMPPQPAAVGEKLPPYPLFPPGLIPGMVRK 250
           LP+A+P   F+ S+P+P+SVQP  QQP   L  P  A +GEKLPPYPLFPPGLIPGMVRK
Sbjct: 455 LPNAVPAGPFLGSMPIPSSVQPANQQPALHL--PTAAGLGEKLPPYPLFPPGLIPGMVRK 514

Query: 251 MQIGSGVPYSPMSPLDIPTMIPPSNISPSEVLERVSKFFKEIGEVNPSEGPMS-SDSKDD 310
           MQIGSGVPYSPMSPLDIPT+IPPSN+SPSE+LERVSKFFKEIGEVNPSEGPM  SDSKD+
Sbjct: 515 MQIGSGVPYSPMSPLDIPTVIPPSNVSPSEILERVSKFFKEIGEVNPSEGPMEPSDSKDE 574

Query: 311 DYEYDREPPVRKGGACIPPPPNLQVDPETGAYADGSVDRK----GSGRLGLGASANPNED 370
           D EY+R+ PVRKGGACIPPPPNLQVDPETG YADGSV+RK    GS RLGLGA+ANPNE 
Sbjct: 575 DDEYERDSPVRKGGACIPPPPNLQVDPETGTYADGSVERKPGSSGSARLGLGATANPNEV 634

Query: 371 SQYDDVYTSYRKQRSTNYHTSMSARATTK 392
           SQYDDVYTSYRKQRSTNYH+SMSARA T+
Sbjct: 635 SQYDDVYTSYRKQRSTNYHSSMSARAGTR 660

[Close]

BLAST of Cp4.1LG06g04600.1 vs. NCBI nr
Match: gi|731410477|ref|XP_010657574.1| (PREDICTED: calcium homeostasis endoplasmic reticulum protein-like isoform X1 [Vitis vinifera])

HSP 1 Score: 508.8 bits (1309), Expect = 8.2e-141
Identity = 267/389 (68.64%), Postives = 313/389 (80.46%), Query Frame = 1


Query: 11  FFXAMAEALRDMVFNIDDSEKQLHIIYLVNDILFESMMRRINAKDLDNEALAFEPVLGSM 70
           F  A+AEALRD VF +DDSE+QLHIIYL NDILF+S+ RRIN  +LDNEALAF+PVLGSM
Sbjct: 307 FAPALAEALRDRVFAVDDSERQLHIIYLANDILFDSLQRRINPHELDNEALAFKPVLGSM 366

Query: 71  LARVYHNPQMKEESQLKLQKLVQFWASKEIYDQNTINTLEGEMINGIPTKALPGHPKE-- 130
           LAR+YHNPQ KEE+Q +LQK++QFWASKE+YD +TI  LEGEMI G P+ +  G  KE  
Sbjct: 367 LARIYHNPQNKEENQSRLQKILQFWASKEVYDHDTIYGLEGEMIGGPPSNSFSGPHKELS 426

Query: 131 -TPASVDSAAGLTSHTNNLTVHQWQSDRQGAIPSFPDQEHPDKTVPAGQTLPRSVTPQQF 190
             P    + +GL    ++   H WQ ++  ++PS  +QE PDK +P+   +P S+  QQF
Sbjct: 427 AVPVDPSAVSGLPQSAHHNIPH-WQPEKPCSMPSLLEQEQPDKQMPSLAAMPPSLATQQF 486

Query: 191 LPSAIPTAAFVSSIPLPTSVQPPIQQPNAQLMPPQPAAVGEKLPPYPLFPPGLIPGMVRK 250
           LP+A+P   F+ S+P+P+SVQP  QQP   L  P  A +GEKLPPYPLFPPGLIPGMVRK
Sbjct: 487 LPNAVPAGPFLGSMPIPSSVQPANQQPALHL--PTAAGLGEKLPPYPLFPPGLIPGMVRK 546

Query: 251 MQIGSGVPYSPMSPLDIPTMIPPSNISPSEVLERVSKFFKEIGEVNPSEGPMS-SDSKDD 310
           MQIGSGVPYSPMSPLDIPT+IPPSN+SPSE+LERVSKFFKEIGEVNPSEGPM  SDSKD+
Sbjct: 547 MQIGSGVPYSPMSPLDIPTVIPPSNVSPSEILERVSKFFKEIGEVNPSEGPMEPSDSKDE 606

Query: 311 DYEYDREPPVRKGGACIPPPPNLQVDPETGAYADGSVDRK----GSGRLGLGASANPNED 370
           D EY+R+ PVRKGGACIPPPPNLQVDPETG YADGSV+RK    GS RLGLGA+ANPNE 
Sbjct: 607 DDEYERDSPVRKGGACIPPPPNLQVDPETGTYADGSVERKPGSSGSARLGLGATANPNEV 666

Query: 371 SQYDDVYTSYRKQRSTNYHTSMSARATTK 392
           SQYDDVYTSYRKQRSTNYH+SMSARA T+
Sbjct: 667 SQYDDVYTSYRKQRSTNYHSSMSARAGTR 692

[Close]

BLAST of Cp4.1LG06g04600.1 vs. NCBI nr
Match: gi|731432620|ref|XP_010644338.1| (PREDICTED: calcium homeostasis endoplasmic reticulum protein-like isoform X2 [Vitis vinifera])

HSP 1 Score: 503.4 bits (1295), Expect = 3.5e-139
Identity = 267/391 (68.29%), Postives = 313/391 (80.05%), Query Frame = 1


Query: 11  FFXAMAEALRDMVFNIDDSEKQLHIIYLVNDILFESMMRRINAKDLDNEALAFEPVLGSM 70
           F  A+AEALRD VF +DDSE+QLHIIYL NDILF+S+ RRIN  +LDNEALAF+PVLGSM
Sbjct: 274 FAPALAEALRDRVFALDDSERQLHIIYLANDILFDSLQRRINPHELDNEALAFKPVLGSM 333

Query: 71  LARVYHNPQMKEESQLKLQKLVQFWASKEIYDQNTINTLEGEMINGIPTKALPGHPKE-- 130
           LAR+YHNPQ KEE+Q +LQK++QFWASKE+YD +TI  LEG+MI G P  +  G  KE  
Sbjct: 334 LARIYHNPQNKEENQSRLQKILQFWASKEVYDHDTIYGLEGDMIGGPPGNSFSGLLKELS 393

Query: 131 -TPASVDSAAGL--TSHTNNLTVHQWQSDRQGAIPSFPDQEHPDKTVPAGQTLPRSVTPQ 190
             PA   + +GL  T+H N   V QWQ D+  ++PS  +QE PDK +P+   +P S+  Q
Sbjct: 394 AVPADPSAVSGLPQTAHHN---VPQWQPDKPSSMPSLLEQEQPDKQMPSLAAMPPSLATQ 453

Query: 191 QFLPSAIPTAAFVSSIPLPTSVQPPIQQPNAQLMPPQPAAVGEKLPPYPLFPPGLIPGMV 250
           QFLP+A+P   F+ S+P+P+SVQP  QQP   L  P    +GEKLPPYPLFPPGLIPGMV
Sbjct: 454 QFLPNAVPAGPFLGSMPIPSSVQPANQQPALHL--PTATGLGEKLPPYPLFPPGLIPGMV 513

Query: 251 RKMQIGSGVPYSPMSPLDIPTMIPPSNISPSEVLERVSKFFKEIGEVNPSEGPMS-SDSK 310
           RKMQIGSGVPYSPMSPLDIPT+IP SN+SPSE+LERVSKFFKEIGEVNPSEGPM  SDSK
Sbjct: 514 RKMQIGSGVPYSPMSPLDIPTVIPLSNVSPSEILERVSKFFKEIGEVNPSEGPMEPSDSK 573

Query: 311 DDDYEYDREPPVRKGGACIPPPPNLQVDPETGAYADGSVDRK----GSGRLGLGASANPN 370
           D+D EY+R+PPVRKGGACIPPPPNLQVDPETG Y+DGSV+RK    GS RLGLGA+ANPN
Sbjct: 574 DEDDEYERDPPVRKGGACIPPPPNLQVDPETGTYSDGSVERKPGSSGSARLGLGATANPN 633

Query: 371 EDSQYDDVYTSYRKQRSTNYHTSMSARATTK 392
           E SQYDDVY+SYRKQRST YH+SMSAR  T+
Sbjct: 634 EVSQYDDVYSSYRKQRSTTYHSSMSARVGTR 659

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g04600.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG06g04600.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSG0_CUCSA	1.1e-197	92.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G215110 PE=4 SV=1	[more]
F6H1T4_VITVI	5.7e-141	68.64	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0055g00770 PE=4 SV=...	[more]
F6H2C9_VITVI	2.4e-139	68.29	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g05300 PE=4 SV=...	[more]
A0A059B6H7_EUCGR	1.2e-138	68.67	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H04509 PE=4 SV=1	[more]
U5FJU4_POPTR	1.7e-137	67.44	SWAP/surp domain-containing family protein OS=Populus trichocarpa GN=POPTR_0018s...	[more]

BLAST of Cp4.1LG06g04600.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G31200.2	4.5e-121	61.30	SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containin...	[more]

BLAST of Cp4.1LG06g04600.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449460882\|ref\|XP_004148173.1\|	1.6e-197	92.13	PREDICTED: calcium homeostasis endoplasmic reticulum protein [Cucumis sativus]	[more]
gi\|659109679\|ref\|XP_008454822.1\|	2.9e-194	90.41	PREDICTED: calcium homeostasis endoplasmic reticulum protein-like [Cucumis melo]	[more]
gi\|731410481\|ref\|XP_010657576.1\|	8.2e-141	68.64	PREDICTED: calcium homeostasis endoplasmic reticulum protein-like isoform X2 [Vi...	[more]
gi\|731410477\|ref\|XP_010657574.1\|	8.2e-141	68.64	PREDICTED: calcium homeostasis endoplasmic reticulum protein-like isoform X1 [Vi...	[more]
gi\|731432620\|ref\|XP_010644338.1\|	3.5e-139	68.29	PREDICTED: calcium homeostasis endoplasmic reticulum protein-like isoform X2 [Vi...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR006903	RNA_pol_II-bd
IPR006569	CID_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
cellular_component	GO:0048046	apoplast
molecular_function	GO:0003723	RNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG06g04600	Cp4.1LG06g04600	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG06g04600.1	Cp4.1LG06g04600.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG06g04600.1:five_prime_utr:001	Cp4.1LG06g04600.1:five_prime_utr:001	five_prime_UTR
Cp4.1LG06g04600.1:five_prime_utr:002	Cp4.1LG06g04600.1:five_prime_utr:002	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG06g04600.1:cds:001	Cp4.1LG06g04600.1:cds:001	CDS
Cp4.1LG06g04600.1:cds:002	Cp4.1LG06g04600.1:cds:002	CDS
Cp4.1LG06g04600.1:cds:003	Cp4.1LG06g04600.1:cds:003	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG06g04600.1:three_prime_utr:001	Cp4.1LG06g04600.1:three_prime_utr:001	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006569	CID domain	PROFILE	PS51391	CID	coord: 1..117 score: 15
IPR006903	RNA polymerase II-binding domain	PFAM	PF04818	CTD_bind	coord: 32..101 score: 9.1
None	No IPR available	PANTHER	PTHR12323	SR-RELATED CTD ASSOCIATED FACTOR 6	coord: 11..170 score: 7.8E-134coord: 188..388 score: 7.8E