Cp4.1LG05g13330.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g13330.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG05 : 9358707 .. 9362389 (+)
Sequence length2289
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGGCCTGGCACGTGAGTGTTTAGGCCCATCTCAAAAAGAAAATAATCTGACATGAAAATAAAATTTAATAAACAGTGGCAGTGATCGGAGCCCTAGAAAGTGCCGGCGAAGGGGAATCATCCACCGGCACCGTCCCTGTCACTGGTACTCTCCTCCCGTCTGAGCGATCGTGTTTCAATCTTAATGAATTAACGATTTGAACTGTTCTTCTTTCTTCTCAATTGCCTCAAGTAGTTTCAGTTTCCTCTCCGATGTTTTTAGCTTATGATTTTGCGAATTTTACTTTCTTCTCGAATATGGAAAGTTTAGGTCTCTCAATTACTTGTACAAATAAACGAGATAGTTTTTTATATCTTTGTGTTATCGGTATATTCGAGAAAATTGAGGTTCGTCCATTTCTGTATAGCCGCGATTATATCTCTCGAAGGATCGCGATTCAATCTCATTCTACTTTTGAAGCTGAATTTAGAAAAATGAGTTAATGAGGCTGCGACATTTGAAGAATTTGAGTCTTGTTGGGAAGCTCTTCTGAATAAACATTACATTATGGACAATGAATGGCTTCAGTTAATGTATTGTGCTGGACAACAGTGGGGGTACCTGTTTATGTGAGAGACACTTTCTTTGGAGAGTAGGTTTGAATTTGTTTTTTTGATGGATATGTTACTGCATCCACCACGTTACAGATGTTGGTTAGACAGTATGAAAAGGGCCATGGAAAATTGGTATGGAAAAGAATTAAAAGCTGATTATGATCCAACTAACTCTATGCTAGTTTTGAAGACAACAGGCTGCAGATCCATATTCAAGGAGGATATTCAGAAAGTTCCAGGAGGAATTGGTAGAAACTCTTGCCAATCCTGCAACCAAAATTGATGATACAGGAACCGTGCCAAGTATCGAAATTTGGGGATGATCATAAAGCACATGCGGTTAGTTGAGTTGAAAGCTAATTGCAGCTATCAATTGTTTGAATATCTGGGAATAATTTGCAGACATATATTATCAGTTTTCCTTCTCAATATGTATTGAATCGGTGGACTAGAAATGACAGAAATGGAGATGCAATAGATGACCATAATTCTGAATTTCCTATTGAATCTAGAGATTCTTTGACTGTTAGGTACAATAATCTTCCTCAAGAAGCAATCAAGTGTAACAGTTCAACCTTACCGCTAGCAGATATTAACCGTTTAAGCCCGTTATATATCACCGTCCTCTGTTAGGGAGAGGTTTCCACACCCTTATAAGGAATGTTTCGTTATCCTCTCCAACCGTTGTGGGATCTCACATCAAATGTGTTGAGGAAGGAGTAAAGTCAATTCATATTCATAACGTGGCTATGGATATGGATGCCTTAAAAGAGGCCTCCAGAAAGGTTGCTGCTGTGAAGAATCGTGGCCCTAGAGCTTCGAATGGTGATATCATGGCCAATGGAGTTGTTGATCAATGGTTGCAACAGAAGAGGATCAGGCAGCAACCTATGGATCAGTGGTTAGTCTCTTTAATTTGCAGTCTTAAAATCACTGAAATATATCATTATTTATTGATGATCCTCCTCCTCTTCCCGTGAGTGGAGTCCAGAAATTGTGCATTGTGCTTGAAAGACATCTAAAGCATTAGGGTAAAACACTAAATTTTTGTAACGGCCAGTAGATATTGTCCTCTCTGGACTTTTCCTTTCGGGCTTCCCCCTCAAGGCTTTAAAACGCGTCTGCTAGGGAAAGGTTTCCACACTCTTATAAGGTGTTTCGTTCTCCTCCCCCACCAATGCGGGATATCACAATCCACCCCCTTCAGGGCCCAGCGTCCTTACTGGCACACTGCCTCGTGTCTACCCCCTTTCGGGGAAGAGCCTCCTCGCTGGCATATCACCCAGTGTCTGGCTCTGATACCATTTGTAACGGCCCAAGCCCACCGCTAGCAGATATTGTCATTTTTTTGGCTTTCCTTTTTGGGCTTCCCCTCAAGGCTTTAAAACGCGTCTACTAGGGAAAGATTTCCACACTCTTATAAAGGATGTTTCGTTCTCCTCCCCAACCAACCAATGTTGTTTTAGATTGAGTGGTAGGCTTTACTTTTGAATCAATTGAACACGGAGAGTTGGAAGATTCATTAGCTAATGTCAATAATAACGCTTAGGGGCTTGGGCCACATAGAACTTACTGAGTTTTTCTTGTCCTATACCTGTACTTTGGTTGGATGGCTTTCATTGTCTATACACTTTCAGATAGGTATGCCGGTTTTTAACTTAATTATTTCTGAACTTGACTGTTCTTTGATGCATCTGTTGTGCTGTATATGATGAATTGTCAAATAGATAATGCTCGTGCTTGATATCGAAGCGAGTCGATAGATTTGTCAAGGCTTCAGTTAATTAGATTCAGGTTGGTAGCGGTCATGTGGTCGACTTGTTGGGTGAATTAAATTCGATGAATTGTCCAAATACGAGCCAACTGTTCGTCTCTGCAGTTTTCATATCTACTTTTCTAGTGAGATTGAAAAGAGAAAAGGCTTGAAATAACCTATCATCAATTTTGTGGATGTAACATTTGAGAAGATAATGAAGTTTTCAGGACATAACGTGCTTTCTTATTTGTTCTCTGTTTCTGTTGGTTCTTTTCCCAGGAATAGAAGGAGAAGAAAATTCATGATCTTGGAAAAAATTGATCAACGTTGTGAAGTGTATAGAGCAAATCTCCTACCTGTTCTTAGAGACGTGGAAGAGCAGAAGTTGAATCTATCAGTGATGGTCCAAAATGGGAGGAGCACAAACCCACCGCTAACCGATATTATCCGTTTTGGCCCGTTACATATCGCCGTCAGCCTCACGATTTTTAAACACGTCTACTAGAGAGAGGTGGTTTTCACATCCTTACAAAGAATGTTTCGTTTCCCTCTCCAATAGATGTAGGATCACACAATCCATTACCTTGGAGGTCAATGTTGTCGTTGGAACACCACCTGGTGTTCGACTCTGATATTATTTGTAACAGCCCAAGCTTACTGCCAACAGATATTGTTCTCTTTGGAGTTTCCTTCAAAGTTCTAAAACACATCTGTTAGGTAGAGGTTTCCATACCCTTAAGCATTGTTTTATTTCTCCCTCCAACTGACTTAGAGCTCACTAATTATGATTGTCATCATCTCTTGAGTTGATACCATTCATCCACCGTGTTCATCTTATTTAATGGCTCGTCTTTCCAAAGAATAAGAATGACGAATCAACAGAACAAGTGACCGGTGGCATCGAAAGGAACGGTCAGGGTGTCTACTGTCATGTAAGTGCTCTAAATTCTAAATGTTGTTGTGTAGAAAAAAATGCTATACCTTAACCTATTCGAGTGTGACAAAGAGGTGGTTGGATCTAGGATGAAGCATCATGAACATCTGGCATTAAAGCCTGCCTTTGGACGCTATTGACATCCTGATGACTCGACAACTTCTTTGGGTGATTCTTGTGAAGTAAATACAATGTATTGTTAAAAGTTCTTCAATTTTGTAGGAATATCATTTAATATTAGTTAGGTCCAATGAAAAAAAGCTCTATTTTTCTCGATTGCATGGCTCTGGTACCATATGTAACCGCTTAAGCTCACCACTAGTAAATATTATCCGTTTCGGCCCATTATGTATCGTCGTTTTGGCCCGTTATGTATTGTCGTCAGTCTCACGGTTTTAA

mRNA sequence

TGGGCCTGGCACGTGAGTGTTTAGGCCCATCTCAAAAAGAAAATAATCTGACATGAAAATAAAATTTAATAAACAGTGGCAGTGATCGGAGCCCTAGAAAGTGCCGGCGAAGGGGAATCATCCACCGGCACCGTCCCTGTCACTGCCGCGATTATATCTCTCGAAGGATCGCGATTCAATCTCATTCTACTTTTGAAGCTGAATTTAGAAAAATGAGTTAATGAGGCTGCGACATTTGAAGAATTTGAGTCTTGTTGGGAAGCTCTTCTGAATAAACATTACATTATGGACAATGAATGGCTTCAGTTAATGTATTGTGCTGGACAACAGTGGGGGTACCTGTTTATGTGAGAGACACTTTCTTTGGAGAGTAGGTTTGAATTTGTTTTTTTGATGGATATGTTACTGCATCCACCACGTTACAGATGTTGGTTAGACAGTATGAAAAGGGCCATGGAAAATTGGTATGGAAAAGAATTAAAAGCTGATTATGATCCAACTAACTCTATGCTAGTTTTGAAGACAACAGGCTGCAGATCCATATTCAAGGAGGATATTCAGAAAGTTCCAGGAGGAATTGGTAGAAACTCTTGCCAATCCTGCAACCAAAATTGATGATACAGGAACCGTGCCAAGTATCGAAATTTGGGGATGATCATAAAGCACATGCGGTTAGTTGAGTTGAAAGCTAATTGCAGCTATCAATTGTTTGAATATCTGGGAATAATTTGCAGACATATATTATCAGTTTTCCTTCTCAATATGTATTGAATCGGTGGACTAGAAATGACAGAAATGGAGATGCAATAGATGACCATAATTCTGAATTTCCTATTGAATCTAGAGATTCTTTGACTGTTAGGTACAATAATCTTCCTCAAGAAGCAATCAAGTGTAACAGTTCAACCTTACCGCTAGCAGATATTAACCGTTTAAGCCCGTTATATATCACCGTCCTCTGTTAGGGAGAGGTTTCCACACCCTTATAAGGAATGTTTCGTTATCCTCTCCAACCGTTGTGGGATCTCACATCAAATGTGTTGAGGAAGGAGTAAAGTCAATTCATATTCATAACGTGGCTATGGATATGGATGCCTTAAAAGAGGCCTCCAGAAAGGTTGCTGCTGTGAAGAATCGTGGCCCTAGAGCTTCGAATGGTGATATCATGGCCAATGGAGTTGTTGATCAATGGTTGCAACAGAAGAGGATCAGGCAGCAACCTATGGATCAGTGGGGCTTGGGCCACATAGAACTTACTGAGTTTTTCTTGTCCTATACCTGTACTTTGGTTGGATGGCTTTCATTGTCTATACACTTTCAGATAGGAATAGAAGGAGAAGAAAATTCATGATCTTGGAAAAAATTGATCAACGTTGTGAAGTGTATAGAGCAAATCTCCTACCTGTTCTTAGAGACGTGGAAGAGCAGAAGTTGAATCTATCAGTGATGGTCCAAAATGGGAGGAGCACAAACCCACCGCTAACCGATATTATCCGTTTTGGCCCGTTACATATCGCCGTCAGCCTCACGATTTTTAAACACGTCTACTAGAGAGAGGTGGTTTTCACATCCTTACAAAGAATGTTTCGTTTCCCTCTCCAATAGATGTAGGATCACACAATCCATTACCTTGGAGGTCAATGTTGTCGTTGGAACACCACCTGGTGTTCGACTCTGATATTATTTGTAACAGCCCAAGCTTACTGCCAACAGATATTGTTCTCTTTGGAGTTTCCTTCAAAGTTCTAAAACACATCTGTTAGGTAGAGGTTTCCATACCCTTAAGCATTGTTTTATTTCTCCCTCCAACTGACTTAGAGCTCACTAATTATGATTGTCATCATCTCTTGAGTTGATACCATTCATCCACCGTGTTCATCTTATTTAATGGCTCGTCTTTCCAAAGAATAAGAATGACGAATCAACAGAACAAGTGACCGGTGGCATCGAAAGGAACGGTCAGGGTGTCTACTGTCATGATGAAGCATCATGAACATCTGGCATTAAAGCCTGCCTTTGGACGCTATTGACATCCTGATGACTCGACAACTTCTTTGGGTGATTCTTGTGAAGTAAATACAATGTATTGTTAAAAGTTCTTCAATTTTGTAGGAATATCATTTAATATTAGTTAGGTCCAATGAAAAAAAGCTCTATTTTTCTCGATTGCATGGCTCTGGTACCATATGTAACCGCTTAAGCTCACCACTAGTAAATATTATCCGTTTCGGCCCATTATGTATCGTCGTTTTGGCCCGTTATGTATTGTCGTCAGTCTCACGGTTTTAA

Coding sequence (CDS)

ATGGATATGGATGCCTTAAAAGAGGCCTCCAGAAAGGTTGCTGCTGTGAAGAATCGTGGCCCTAGAGCTTCGAATGGTGATATCATGGCCAATGGAGTTGTTGATCAATGGTTGCAACAGAAGAGGATCAGGCAGCAACCTATGGATCAGTGGGGCTTGGGCCACATAGAACTTACTGAGTTTTTCTTGTCCTATACCTGTACTTTGGTTGGATGGCTTTCATTGTCTATACACTTTCAGATAGGAATAGAAGGAGAAGAAAATTCATGA

Protein sequence

MDMDALKEASRKVAAVKNRGPRASNGDIMANGVVDQWLQQKRIRQQPMDQWGLGHIELTEFFLSYTCTLVGWLSLSIHFQIGIEGEENS
Homology
[Close]
BLAST of Cp4.1LG05g13330.1 vs. NCBI nr
Match: gi|659094618|ref|XP_008448155.1| (PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Cucumis melo])

HSP 1 Score: 58.9 bits (141), Expect = 5.1e-06
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 1 

Query: 3   MDALKEASRKVAAVKNRGPRASNGDIMANGVV 35
           M+ALKEASRKVAAVKNRGP A+NGDIMANGVV
Sbjct: 447 MEALKEASRKVAAVKNRGPGATNGDIMANGVV 478

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g13330.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g13330.1 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g13330.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g13330.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659094618|ref|XP_008448155.1|5.1e-0690.63PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG05g13330Cp4.1LG05g13330gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG05g13330.1Cp4.1LG05g13330.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG05g13330.1:five_prime_utr:001Cp4.1LG05g13330.1:five_prime_utr:001five_prime_UTR
Cp4.1LG05g13330.1:five_prime_utr:002Cp4.1LG05g13330.1:five_prime_utr:002five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG05g13330.1:cds:001Cp4.1LG05g13330.1:cds:001CDS
Cp4.1LG05g13330.1:cds:002Cp4.1LG05g13330.1:cds:002CDS
Cp4.1LG05g13330.1:cds:003Cp4.1LG05g13330.1:cds:003CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG05g13330.1:three_prime_utr:001Cp4.1LG05g13330.1:three_prime_utr:001three_prime_UTR
Cp4.1LG05g13330.1:three_prime_utr:002Cp4.1LG05g13330.1:three_prime_utr:002three_prime_UTR